BAC Information

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BAC

Clone NameB6Ng01-199J02
Chromosome18 (Build37)
Map Location 75,437,701 - 75,620,495
singlet/doubletdoublet
Overlap geneDym, Smad7, Gm672
Upstream geneMbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, LOC628356, EG667777
Downstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199J02.bB6Ng01-199J02.g
ACCGA020867GA020868
length6821,097
definitionB6Ng01-199J02.b B6Ng01-199J02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,619,814 - 75,620,495)(75,437,701 - 75,438,776)
sequence
gaattcctcatgcgtgcctgttggatttcctggggttgggtcatgatggt
tgtgagacacgatgtgggtgctgggaatcaaaccaggtcctctgcaagag
caagtgctcttcttaactctggagtcatccctccagcccttactttatta
gttgttaatatcaactctcaggtcatacattatcgagagagagagagaag
agttaagctgtttgggccccagagttattcagtcagtctcagagatgcct
cttcaaaggccaatctgaagtaggctgagtgtcaggggcaggagaagagc
agtcaagcctgacacagaggcaggagccctttgctgtgtggttctcctgg
ccatggcttgcggtgtgcgagtaggtgaccagtcggcatcccaggcacac
tgcagactccaggagtgcctcctctacactctcaggcgaggggtggtaca
tctgggtaactgacaagctcgcgcgcttggtgtttctcatatcaatctaa
tgcagtttcaggctgttattgatcggcacaacgaattatttatacatttg
tacttctcgctgttttggcaagtggtagtgacttgtttgtgtaaacaaga
tgtggagttgttctttcacttgatacttatacccaaaatgcagcgactcc
tgtactgttgctctatgggggagtgggggtgg
gaattcatgagaaatggaagcttttccctcctcgcccaccgctgctcagt
ggctctgtgtctgtccccttcctgctggtggctgcatctttacacatctg
cagttcctttggtctttcatctgcccagcaaagagtcagacggactgatg
gcatcggggcctccacttgcattggttcactgttctcccatctgcccggc
ctaactcctctgctccctggcacccgtgactcctgctgaagtccacgcag
gtctgcacggaacagcaggtcctctttccactgcagccctagatgcagga
cccaggtgtccgttttttagtgacagtcaggtagagaagggggaaaggta
caaccagatggcctcacgtaggggggtgacaggaggctatagagctcccg
catcctgtaatgcaaccatggacttcacaaggaacacttttctttgctgt
cctgtaacaggctcatgaggccactttcgactgcctgaccaggctgcccc
ccataaacgagccctgtgaacgagcttgctactcagtccaaggctccaca
gctgccagcctgttttggctgccttgggcccagtggccaccgtctacttg
tctaccccacttaccatgtgcaggaaactcttttccgtgggccgcatagc
tgtttgattgtaaattgcattaacttcctggagccttgccagccgcttgc
tgggtgtctgatgctatctgtatagactttaggtggaaactggaaatctc
actgaacttctgtggtaattaaaatttattacagttgttaccctacattc
tgttcactgacttcctgtgggtttttcacccggatcacatgactgacaac
agagacaggctgttatgtagtaggcttctgggtgtgccagctctatccta
agtctcaacgccacctcaggactttatgctgtgtccgcttgagtcgagcg
tccggggtgtcctcactgttggtaggttgatttcaccttgagcctgaata
aaaaaaaaaagttccggcccacttcgaaagtctaacgtttcctctggctc
aaatttaaaacatccgggatttgttgtgtagtggctttggacaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_75619814_75620495
seq2: B6Ng01-199J02.b_47_728 (reverse)

seq1  CCACCCCCACTCCCCCATAGAGCAACAGTACAGGAGTCGCTGCATTTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCACTCCCCCATAGAGCAACAGTACAGGAGTCGCTGCATTTTGG  50

seq1  GTATAAGTATCAAGTGAAAGAACAACTCCACATCTTGTTTACACAAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTATCAAGTGAAAGAACAACTCCACATCTTGTTTACACAAACAA  100

seq1  GTCACTACCACTTGCCAAAACAGCGAGAAGTACAAATGTATAAATAATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTACCACTTGCCAAAACAGCGAGAAGTACAAATGTATAAATAATTC  150

seq1  GTTGTGCCGATCAATAACAGCCTGAAACTGCATTAGATTGATATGAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGCCGATCAATAACAGCCTGAAACTGCATTAGATTGATATGAGAAA  200

seq1  CACCAAGCGCGCGAGCTTGTCAGTTACCCAGATGTACCACCCCTCGCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAGCGCGCGAGCTTGTCAGTTACCCAGATGTACCACCCCTCGCCTG  250

seq1  AGAGTGTAGAGGAGGCACTCCTGGAGTCTGCAGTGTGCCTGGGATGCCGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTAGAGGAGGCACTCCTGGAGTCTGCAGTGTGCCTGGGATGCCGA  300

seq1  CTGGTCACCTACTCGCACACCGCAAGCCATGGCCAGGAGAACCACACAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACCTACTCGCACACCGCAAGCCATGGCCAGGAGAACCACACAGC  350

seq1  AAAGGGCTCCTGCCTCTGTGTCAGGCTTGACTGCTCTTCTCCTGCCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGCTCCTGCCTCTGTGTCAGGCTTGACTGCTCTTCTCCTGCCCCTG  400

seq1  ACACTCAGCCTACTTCAGATTGGCCTTTGAAGAGGCATCTCTGAGACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGCCTACTTCAGATTGGCCTTTGAAGAGGCATCTCTGAGACTGA  450

seq1  CTGAATAACTCTGGGGCCCAAACAGCTTAACTCTTCTCTCTCTCTCTCGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAACTCTGGGGCCCAAACAGCTTAACTCTTCTCTCTCTCTCTCGA  500

seq1  TAATGTATGACCTGAGAGTTGATATTAACAACTAATAAAGTAAGGGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTATGACCTGAGAGTTGATATTAACAACTAATAAAGTAAGGGCTGG  550

seq1  AGGGATGACTCCAGAGTTAAGAAGAGCACTTGCTCTTGCAGAGGACCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGACTCCAGAGTTAAGAAGAGCACTTGCTCTTGCAGAGGACCTGG  600

seq1  TTTGATTCCCAGCACCCACATCGTGTCTCACAACCATCATGACCCAACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTCCCAGCACCCACATCGTGTCTCACAACCATCATGACCCAACCC  650

seq1  CAGGAAATCCAACAGGCACGCATGAGGAATTC  682
      ||||||||||||||||||||||||||||||||
seq2  CAGGAAATCCAACAGGCACGCATGAGGAATTC  682

seq1: chr18_75437701_75438776
seq2: B6Ng01-199J02.g_65_1161

seq1  GAATTCATGAGAAATGGAAGCTTTTCCCTCCTCGCCCACCGCTGCTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGAAATGGAAGCTTTTCCCTCCTCGCCCACCGCTGCTCAGT  50

seq1  GGCTCTGTGTCTGTCCCCTTCCTGCTGGTGGCTGCATCTTTACACATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTGTGTCTGTCCCCTTCCTGCTGGTGGCTGCATCTTTACACATCTG  100

seq1  CAGTTCCTTTGGTCTTTCATCTGCCCAGCAAAGAGTCAGACGGACTGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCTTTGGTCTTTCATCTGCCCAGCAAAGAGTCAGACGGACTGATG  150

seq1  GCATCGGGGCCTCCACTTGCATTGGTTCACTGTTCTCCCATCTGCCCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGGGCCTCCACTTGCATTGGTTCACTGTTCTCCCATCTGCCCGGC  200

seq1  CTAACTCCTCTGCTCCCTGGCACCCGTGACTCCTGCTGAAGTCCACGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCCTCTGCTCCCTGGCACCCGTGACTCCTGCTGAAGTCCACGCAG  250

seq1  GTCTGCACGGAACAGCAGGTCCTCTTTCCACTGCAGCCCTAGATGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACGGAACAGCAGGTCCTCTTTCCACTGCAGCCCTAGATGCAGGA  300

seq1  CCCAGGTGTCCGTTTTTTAGTGACAGTCAGGTAGAGAAGGGGGAAAGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGTGTCCGTTTTTTAGTGACAGTCAGGTAGAGAAGGGGGAAAGGTA  350

seq1  CAACCAGATGGCCTCACGTAGGGGGGTGACAGGAGGCTATAGAGCTCCCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGATGGCCTCACGTAGGGGGGTGACAGGAGGCTATAGAGCTCCCG  400

seq1  CATCCTGTAATGCAACCATGGACTTCACAAGGAACACTTTTCTTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGTAATGCAACCATGGACTTCACAAGGAACACTTTTCTTTGCTGT  450

seq1  CCTGTAACAGGCTCATGAGGCCACTTTCGACTGCCTGACCAGGCTGCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAACAGGCTCATGAGGCCACTTTCGACTGCCTGACCAGGCTGCCCC  500

seq1  CCATAAACGAGCCCTGTGAACGAGCTTGCTACTCAGTCCAAGGCTCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAACGAGCCCTGTGAACGAGCTTGCTACTCAGTCCAAGGCTCCACA  550

seq1  GCTGCCAGCCTGTTTTGGCTGCCTTGGGCCCAGTGGCCACCGTCTACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGCCTGTTTTGGCTGCCTTGGGCCCAGTGGCCACCGTCTACTTG  600

seq1  TCTACCCCACTTACCATGTGCAGGAAACTCTTTTCCGTGGGCCGCATAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCCACTTACCATGTGCAGGAAACTCTTTTCCGTGGGCCGCATAGC  650

seq1  TGTTTGATTGTAAATTGCATTAACTTCCTGGAGCCTTGCCAGCCGCTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATTGTAAATTGCATTAACTTCCTGGAGCCTTGCCAGCCGCTTGC  700

seq1  TGGGTGTCTGATGCTATCTGTATAGACTTTAGGTGGAAACTGGAAATCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTCTGATGCTATCTGTATAGACTTTAGGTGGAAACTGGAAATCTC  750

seq1  ACTGAACTTCTGTGGTAAT--AAAATTATTACAGTTG-TACCCTACA-TC  796
      |||||||||||||||||||  ||| |||||||||||| ||||||||| ||
seq2  ACTGAACTTCTGTGGTAATTAAAATTTATTACAGTTGTTACCCTACATTC  800

seq1  TGTTCACTGACTTCCTGTGGG-TTTTCA-CCGGATCACATGACTGACAAC  844
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  TGTTCACTGACTTCCTGTGGGTTTTTCACCCGGATCACATGACTGACAAC  850

seq1  AGAGACAGGCTG-TATGTAGTAGGC-CCTGGGTGTGCCAGCTCTATCC-A  891
      |||||||||||| ||||||||||||  ||||||||||||||||||||| |
seq2  AGAGACAGGCTGTTATGTAGTAGGCTTCTGGGTGTGCCAGCTCTATCCTA  900

seq1  AGTCTCAACGCCACCTCA-GAC-TTATGCTGTGT-CGC-TGAGTCGAGCG  937
      |||||||||||||||||| ||| ||||||||||| ||| |||||||||||
seq2  AGTCTCAACGCCACCTCAGGACTTTATGCTGTGTCCGCTTGAGTCGAGCG  950

seq1  TCC-GGGTGTCC-CACTG-TGGTAGGTTGATTTCA-CTGGAG-CTG-ATA  981
      ||| |||||||| ||||| |||||||||||||||| || ||| ||| |||
seq2  TCCGGGGTGTCCTCACTGTTGGTAGGTTGATTTCACCTTGAGCCTGAATA  1000

seq1  AAAAAAAAAAGTTCCGGCCCAC-TCGAGAGTCTAACGTTTCCTCTGGCTC  1030
      |||||||||||||||||||||| |||| ||||||||||||||||||||||
seq2  AAAAAAAAAAGTTCCGGCCCACTTCGAAAGTCTAACGTTTCCTCTGGCTC  1050

seq1  CAAAATTTAAAACA-ACGGGA-TTGTTGT-AAGTGGTTTTGGACAAAGA  1076
        ||||||||||||  ||||| |||||||  ||||| ||||||||||||
seq2  --AAATTTAAAACATCCGGGATTTGTTGTGTAGTGGCTTTGGACAAAGA  1097