BAC Information

Click to search

BAC

Clone NameB6Ng01-200D12
Chromosome18 (Build37)
Map Location 57,222,337 - 57,387,692
singlet/doubletdoublet
Overlap geneMegf10
Upstream geneLOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik
Downstream geneLOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D12.bB6Ng01-200D12.g
ACCGA021342GA021343
length7831,113
definitionB6Ng01-200D12.b B6Ng01-200D12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,386,911 - 57,387,692)(57,222,337 - 57,223,432)
sequence
gaattcctttgcctaatttcttgctatttatgctccattcgggcacacat
tagcagctaaattctatcgccttatagaatcttccccgtgaggaagaata
tgtgaaagtttcagagagcaaactagtagacattctgacttcacactgag
gctgactgaaccagttttctcagtcaaaggccagagtgacatcaaaagtc
agagtgacgtcactctgaagtcacctctccacaccaggaattcctggtgc
ttacagcaaatcacagtgtaattatctctctctggagaagaaagcactcc
ctggtccacacatctgatataccttgtgcagtgttatttcagctatcagt
atataagagagatcctttgctataagtctctgaggatgagacagtctttg
ctgcatacaaccacagtgaatcccgaaaccactggagcctacattctcca
tggcagcagaatgaacaactccaggccatgctttatctctggcaggcctt
tggccatttctctcttgactcctgaagatgccttgtctgttcacagcctt
gggttcttctactaagttgaaagcaccgtgagagacacagagtgctacct
ctaatccctcaggtttatatccattattgcccccagctcatttatgtctt
catccccccaccacaccatccacaaaaacttaatgaacatttacagcatg
cccagaacggacaaaaacttgtacttttgtttttctaagcgcgcgcgtgc
gtgcgtgcgtgcgtttgtgtgcacgtgtgtgtg
gaattccatctcattctcattagccatattagccagtttaatggagacag
aagaagtaatcattttttatcatgttctggatgccaataattgatggata
atgtaactgttgttatgaccgctgcagcaagccctgtgattttatattga
agggtagagaagagggatctcttaggccacacagccactctttcaaacag
gttagctctttggagtgttttaaacttaaacttctggatatgatgtataa
atataaaaccaagctgagatcttcctcccagtgggttattcatgagaccg
cttttttatccaagatagatatgcccatttatttcctcctgctcttttta
tccaagatatgcccatttcctcctgctctttcaaggccttgaaattaaaa
aaaaacaaaaccctagaactctgtaatatagatttctcagtttccctgaa
gcacctagaattggtttttctctcttcctttagaatcccaggaatgagtc
ttctcttcttagtatagctctacacacatgtcattaagctgatttattgt
attatgcaccactgtacgcttagctatcatggctttctctcattgtgaga
atgaaacaattattcagagcctactataatgaaaggattttgcccaattc
tgaaagcactaggcactggggatttttctaaaaggcctgattttattaag
gtttaccagtggggtgggtttgaagagacagaagtgaagaaattatgaac
acaaatagaatgcaagattcaaagcaggaaacatgtggcccagagctttc
acatgctgacgcaaaacacttttgaaggatagaattttttatttcgggtt
ttgaatagcactgtaatgtcttagaaagatatttcattttggcgagtttt
taatctgctttttgaaacatgactgcatgttttaactttttttaaaaaaa
tatttttctttatttaccaattcaaatgtattccaatttcctagttttcc
cccctgaaaaccccctccctccgtaatctcttcccccctcgtaccacaca
atccaactcccaccttacctgggtccttgcaatccctatactggggcata
ccaccttcccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57386911_57387692
seq2: B6Ng01-200D12.b_45_827 (reverse)

seq1  CACACACACGTGCACACAAACGCACGCACGCACGCACGCGCGCGCTTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACGTGCACACAAACGCACGCACGCACGCACGCGCGCGCTTAGA  50

seq1  AAAACAAAAGTACAAGTTTTTGTCCGTTCTGGGCATGCTGT-AATGTTCA  99
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAACAAAAGTACAAGTTTTTGTCCGTTCTGGGCATGCTGTAAATGTTCA  100

seq1  TTAAGTTTTTGTGGATGGTGTGGTGGGGGGATGAAGACATAAATGAGCTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTTTTGTGGATGGTGTGGTGGGGGGATGAAGACATAAATGAGCTG  150

seq1  GGGGCAATAATGGATATAAACCTGAGGGATTAGAGGTAGCACTCTGTGTC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAATAATGGATATAAACCTGAGGGATTAGAGGTAGCACTCTGTGTC  200

seq1  TCTCACGGTGCTTTCAACTTAGTAGAAGAACCCAAGGCTGTGAACAGACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACGGTGCTTTCAACTTAGTAGAAGAACCCAAGGCTGTGAACAGACA  250

seq1  AGGCATCTTCAGGAGTCAAGAGAGAAATGGCCAAAGGCCTGCCAGAGATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCTTCAGGAGTCAAGAGAGAAATGGCCAAAGGCCTGCCAGAGATA  300

seq1  AAGCATGGCCTGGAGTTGTTCATTCTGCTGCCATGGAGAATGTAGGCTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGCCTGGAGTTGTTCATTCTGCTGCCATGGAGAATGTAGGCTCC  350

seq1  AGTGGTTTCGGGATTCACTGTGGTTGTATGCAGCAAAGACTGTCTCATCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTTCGGGATTCACTGTGGTTGTATGCAGCAAAGACTGTCTCATCC  400

seq1  TCAGAGACTTATAGCAAAGGATCTCTCTTATATACTGATAGCTGAAATAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACTTATAGCAAAGGATCTCTCTTATATACTGATAGCTGAAATAA  450

seq1  CACTGCACAAGGTATATCAGATGTGTGGACCAGGGAGTGCTTTCTTCTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACAAGGTATATCAGATGTGTGGACCAGGGAGTGCTTTCTTCTCC  500

seq1  AGAGAGAGATAATTACACTGTGATTTGCTGTAAGCACCAGGAATTCCTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGATAATTACACTGTGATTTGCTGTAAGCACCAGGAATTCCTGG  550

seq1  TGTGGAGAGGTGACTTCAGAGTGACGTCACTCTGACTTTTGATGTCACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAGGTGACTTCAGAGTGACGTCACTCTGACTTTTGATGTCACTC  600

seq1  TGGCCTTTGACTGAGAAAACTGGTTCAGTCAGCCTCAGTGTGAAGTCAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTGACTGAGAAAACTGGTTCAGTCAGCCTCAGTGTGAAGTCAGA  650

seq1  ATGTCTACTAGTTTGCTCTCTGAAACTTTCACATATTCTTCCTCACGGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTACTAGTTTGCTCTCTGAAACTTTCACATATTCTTCCTCACGGGG  700

seq1  AAGATTCTATAAGGCGATAGAATTTAGCTGCTAATGTGTGCCCGAATGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTATAAGGCGATAGAATTTAGCTGCTAATGTGTGCCCGAATGGA  750

seq1  GCATAAATAGCAAGAAATTAGGCAAAGGAATTC  782
      |||||||||||||||||||||||||||||||||
seq2  GCATAAATAGCAAGAAATTAGGCAAAGGAATTC  783

seq1: chr18_57222337_57223432
seq2: B6Ng01-200D12.g_66_1178

seq1  GAATTCCATCTCATTCTCATTAGCCATATTAGCCAGTTTAATGGAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTCATTCTCATTAGCCATATTAGCCAGTTTAATGGAGACAG  50

seq1  AAGAAGTAATCATTTTTTATCATGTTCTGGATGCCAATAATTGATGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTAATCATTTTTTATCATGTTCTGGATGCCAATAATTGATGGATA  100

seq1  ATGTAACTGTTGTTATGACCGCTGCAGCAAGCCCTGTGATTTTATATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTGTTGTTATGACCGCTGCAGCAAGCCCTGTGATTTTATATTGA  150

seq1  AGGGTAGAGAAGAGGGATCTCTTAGGCCACACAGCCACTCTTTCAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGAGAAGAGGGATCTCTTAGGCCACACAGCCACTCTTTCAAACAG  200

seq1  GTTAGCTCTTTGGAGTGTTTTAAACTTAAACTTCTGGATATGATGTATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCTTTGGAGTGTTTTAAACTTAAACTTCTGGATATGATGTATAA  250

seq1  ATATAAAACCAAGCTGAGATCTTCCTCCCAGTGGGTTATTCATGAGACCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAACCAAGCTGAGATCTTCCTCCCAGTGGGTTATTCATGAGACCG  300

seq1  CTTTTTTATCCAAGATAGATATGCCCATTTATTTCCTCCTGCTCTTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATCCAAGATAGATATGCCCATTTATTTCCTCCTGCTCTTTTTA  350

seq1  TCCAAGATATGCCCATTTCCTCCTGCTCTTTCAAGGCCTTGAAATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGATATGCCCATTTCCTCCTGCTCTTTCAAGGCCTTGAAATTAAAA  400

seq1  AAAAACAAAACCCTAGAACTCTGTAATATAGATTTCTCAGTTTCCCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAACCCTAGAACTCTGTAATATAGATTTCTCAGTTTCCCTGAA  450

seq1  GCACCTAGAATTGGTTTTTCTCTCTTCCTTTAGAATCCCAGGAATGAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTAGAATTGGTTTTTCTCTCTTCCTTTAGAATCCCAGGAATGAGTC  500

seq1  TTCTCTTCTTAGTATAGCTCTACACACATGTCATTAAGCTGATTTATTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTTAGTATAGCTCTACACACATGTCATTAAGCTGATTTATTGT  550

seq1  ATTATGCACCACTGTACGCTTAGCTATCATGGCTTTCTCTCATTGTGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGCACCACTGTACGCTTAGCTATCATGGCTTTCTCTCATTGTGAGA  600

seq1  ATGAAACAATTATTCAGAGCCTACTATAATGAAAGGATTTTGCCCAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACAATTATTCAGAGCCTACTATAATGAAAGGATTTTGCCCAATTC  650

seq1  TGAAAGCACTAGGCACTGGGGATTTTTCTAAAAGGCCTGATTTTATTAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACTAGGCACTGGGGATTTTTCTAAAAGGCCTGATTTTATTAAG  700

seq1  GTTTACCAGTGGGGTGGGTTTGAAGAGACAGAAGTGAAGAAATTATGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACCAGTGGGGTGGGTTTGAAGAGACAGAAGTGAAGAAATTATGAAC  750

seq1  ACAAATAGAATGCAAGATTCAAAGCAGG-AACATGTGGCCCAGAGC-TTC  798
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ACAAATAGAATGCAAGATTCAAAGCAGGAAACATGTGGCCCAGAGCTTTC  800

seq1  ACATGCTGACGCAAAACACTTTTGAAGGATAGAATTTTT--ATTCGGGTT  846
      |||||||||||||||||||||||||||||||||||||||   ||||||||
seq2  ACATGCTGACGCAAAACACTTTTGAAGGATAGAATTTTTTATTTCGGGTT  850

seq1  TTGAATAGCACTGTAATGTCTTAG-AAGATATTTCATTTTGGCGAGTTTT  895
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAATAGCACTGTAATGTCTTAGAAAGATATTTCATTTTGGCGAGTTTT  900

seq1  TAATCTGCTTTTTGAAACATGACTGCATG-TTTAAC-TTTTTTAAAAAAA  943
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TAATCTGCTTTTTGAAACATGACTGCATGTTTTAACTTTTTTTAAAAAAA  950

seq1  TA-TTTTCTTTATTTA-CAATTCAAATGTTATCCCATTTCCTAGTTT--C  989
      || ||||||||||||| ||||||||||||  ||| ||||||||||||  |
seq2  TATTTTTCTTTATTTACCAATTCAAATGTATTCCAATTTCCTAGTTTTCC  1000

seq1  CCCCTGAAAACCCCCTCC--TCGT-ATCTCTTCCCCCTTCTTACCAACAC  1036
      ||||||||||||||||||   ||| |||||||||||| || |||| ||||
seq2  CCCCTGAAAACCCCCTCCCTCCGTAATCTCTTCCCCCCTCGTACC-ACAC  1049

seq1  -ATCC-ACTCCCA-CTTAC--TGGTCCTGGCATTCCCCTATACTGGGGCA  1081
       |||| ||||||| |||||   |||||| ||| | |||||||||||||||
seq2  AATCCAACTCCCACCTTACCTGGGTCCTTGCAAT-CCCTATACTGGGGCA  1098

seq1  TACAACCTTCACAGG  1096
      ||| |||||| ||||
seq2  TACCACCTTCCCAGG  1113