BAC Information

Click to search

BAC

Clone NameB6Ng01-200K03
Chromosome18 (Build37)
Map Location 35,528,265 - 35,676,663
singlet/doubletdoublet
Overlap geneSil1, LOC100041423, LOC666460, LOC666462
Upstream geneReep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954, LOC100041951, Ctnna1, Lrrtm2
Downstream geneEG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura, 0610010O12Rik, Pfdn1, Hbegf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200K03.bB6Ng01-200K03.g
ACCGA021640GA021641
length1,051931
definitionB6Ng01-200K03.b B6Ng01-200K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,528,265 - 35,529,299)(35,675,739 - 35,676,663)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcgaaaaacc
aaaaaccaaaaaaaaaaaaaaaaaggattataagtcctacggagggtaag
caataatcccaaatgtttccaagagtgcagctatcaccgagattcatgaa
gccacagtgtagtttttatgtttgtcctaactgtgcaatattgaaactag
ttccctaaaaccaacctgctcctgaatgccctaagcagtcccctccaatt
ccccagcccttcagacgtagtgacagcatgtttcagaaaataaaacacac
ttgtaagataatgccacataaactctggagtgtttatggggaataaatgt
caaggtaaggcaggaatatttattgactgtgtgggaggtggtgatcctgt
gtgtcaatgccccactatgctgaactggttttagttttcgcaagtgacta
aaagaccccatggtcatcactgtctctgactatggccacaaggaccttgc
acaggcctagcttccaggcatatgagcctcacaagcctcccattcttaac
gctccatttttccagaacagacagtggcacatggagagctggaaaactaa
aatttccaacagaactcactagaagccattctcttaacctcatgacctac
cagaaaaatctagatcccaagtccttctatgaaccccaattttcagttat
tcatttcgtaagttgcttaaagtgacataaagggagcagctaatttatag
tcctattactttattctgaccagccagatttccaaagacatcagctttac
ttcactttatatcagatagaacagcagtcctggagtcaacgccaagacag
cagctcactctcagggctctgctgacatttaataaacggatcctattttc
tctcttgtgtttttatgttatcagcttaaaccctgccaactttaaattat
tgcccttgtaacaaaatccagagttatctattacctcttgtattgtatat
acatttctgaagcttttgtacctaatatccagttcctgcaaaggttagaa
a
gaattctgctgctttgggccttctctttcatgttcttttatgggcatata
tttctctctctttgggtaaaacgggagtggatctgcaggtcaaagagttt
tgcttcatcagaaagtgccaacaattttccaaattggtgctttaacatta
gttgagtcccttattaaaaacagagtccctggactctgctctgcacttac
tgaaccagaatattgtaggaatatgtcctggaaatagcatatttaaaggc
tctctgtatgatttttgtgtagcttttattggctagtctggaattagctg
gccttggatttgtgggaatgctcctgcctctgcttctcgactggaggtta
ttggatgtcattacttgtctctttaattggcaggttggaatgggtggcag
agactaatcattagggctgctagaactagtgtccctgccctaaatttcca
gttccattctttgaaatccacagtggggtaggaggtgggacaaaaaaaag
aaaaaaaagaaatccacattgtttgctttggtgataggaacttgggttgc
ctaacctgaccttgaactctttacatcgatgaggctggccttgaacttcc
aatcctattgcctccatatcccaaatcttgggattacaaacatgtatagc
tacacccagagctaagtgctagatccaacaaactttctatccaagcttct
ttgtatttgacctctcccttggtgccttatttttgctgggttcaactttc
tttggaactctttccaaggttctgctgtacattgcctctgcttctctgcc
aattcccctatgtatcccccccccaccccccgcacttgctctcctttctt
ctccttccttcctttatcttattttaatttaaattcataggtgtgtgggt
tttgagacagggttttctctttgtacccttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_35528265_35529299
seq2: B6Ng01-200K03.b_46_1096

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACC  50

seq1  AAAAACCAAAAAAAAAAAAAAAAAGGATTATAAGTCCTACGGAGGGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCAAAAAAAAAAAAAAAAAGGATTATAAGTCCTACGGAGGGTAAG  100

seq1  CAATAATCCCAAATGTTTCCAAGAGTGCAGCTATCACCGAGATTCATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAATCCCAAATGTTTCCAAGAGTGCAGCTATCACCGAGATTCATGAA  150

seq1  GCCACAGTGTAGTTTTTATGTTTGTCCTAACTGTGCAATATTGAAACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAGTGTAGTTTTTATGTTTGTCCTAACTGTGCAATATTGAAACTAG  200

seq1  TTCCCTAAAACCAACCTGCTCCTGAATGCCCTAAGCAGTCCCCTCCAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAACCAACCTGCTCCTGAATGCCCTAAGCAGTCCCCTCCAATT  250

seq1  CCCCAGCCCTTCAGACGTAGTGACAGCATGTTTCAGAAAATAAAACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTTCAGACGTAGTGACAGCATGTTTCAGAAAATAAAACACAC  300

seq1  TTGTAAGATAATGCCACATAAACTCTGGAGTGTTTATGGGGAATAAATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGATAATGCCACATAAACTCTGGAGTGTTTATGGGGAATAAATGT  350

seq1  CAAGGTAAGGCAGGAATATTTATTGACTGTGTGGGAGGTGGTGATCCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTAAGGCAGGAATATTTATTGACTGTGTGGGAGGTGGTGATCCTGT  400

seq1  GTGTCAATGCCCCACTATGCTGAACTGGTTTTAGTTTTCGCAAGTGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATGCCCCACTATGCTGAACTGGTTTTAGTTTTCGCAAGTGACTA  450

seq1  AAAGACCCCATGGTCATCACTGTCTCTGACTATGGCCACAAGGACCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACCCCATGGTCATCACTGTCTCTGACTATGGCCACAAGGACCTTGC  500

seq1  ACAGGCCTAGCTTCCAGGCATATGAGCCTCACAAGCCTCCCATTCTTAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTAGCTTCCAGGCATATGAGCCTCACAAGCCTCCCATTCTTAAC  550

seq1  GCTCCATTTTTCCAGAACAGACAGTGGCACATGGAGAGCTGGAAAACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCATTTTTCCAGAACAGACAGTGGCACATGGAGAGCTGGAAAACTAA  600

seq1  AATTTCCAACAGAACTCACTAGAAGCCATTCTCTTAACCTCATGACCTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCAACAGAACTCACTAGAAGCCATTCTCTTAACCTCATGACCTAC  650

seq1  CAGAAAAATCTAGATCCCAAGTCCTTCTATGAACCCCAATTTTCAGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATCTAGATCCCAAGTCCTTCTATGAACCCCAATTTTCAGTTAT  700

seq1  TCATTTCGTAAGTTGCTTAAAGTGACATAAAGGGAGCAGCTAATTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCGTAAGTTGCTTAAAGTGACATAAAGGGAGCAGCTAATTTATAG  750

seq1  TCCTATTACTTTATTCTGACCAGCCAGATTTCCAAAGACATCAGC-TTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCTATTACTTTATTCTGACCAGCCAGATTTCCAAAGACATCAGCTTTAC  800

seq1  TTCACTTTATATCAGATAGAACAGCAGTCCTGGAGTCAACGCCAAGACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTTATATCAGATAGAACAGCAGTCCTGGAGTCAACGCCAAGACAG  850

seq1  CAGCTCACTCTCAGGGGCTCTGCTGACATTT-ATAAACGGATCCTA-TTT  897
      ||||||||||||| ||||||||||||||||| |||||||||||||| |||
seq2  CAGCTCACTCTCA-GGGCTCTGCTGACATTTAATAAACGGATCCTATTTT  899

seq1  CTCTCTTGTG-TTTTATGTTATCAGCT--AAACCTGCCAAC-TTAAATTA  943
      |||||||||| ||||||||||||||||  || ||||||||| ||||||||
seq2  CTCTCTTGTGTTTTTATGTTATCAGCTTAAACCCTGCCAACTTTAAATTA  949

seq1  TTG-CCTTGTAACAAAAT-CAGAGTTATCTATTA-CTCTTGTA---TGTA  987
      ||| |||||||||||||| ||||||||||||||| ||||||||   | ||
seq2  TTGCCCTTGTAACAAAATCCAGAGTTATCTATTACCTCTTGTATTGTATA  999

seq1  TACATTTCTGAAGC-TTTGTACCT-ATATCAAGTT-CTGC-AAGGGTAGA  1033
      |||||||||||||| ||||||||| ||||| |||| |||| |||| ||||
seq2  TACATTTCTGAAGCTTTTGTACCTAATATCCAGTTCCTGCAAAGGTTAGA  1049

seq1  AA  1035
      ||
seq2  AA  1051

seq1: chr18_35675739_35676663
seq2: B6Ng01-200K03.g_67_997 (reverse)

seq1  CCAGGGCTACAAAGAG-AAACCCTGTCTCAAAACACACACACCTATGAAA  49
       || || ||||||||| ||||||||||||||||| |||||||||||| ||
seq2  -CAAGGGTACAAAGAGAAAACCCTGTCTCAAAACCCACACACCTATG-AA  48

seq1  TATAAAATAAAATAAAGATAAAGGAAGGAAGGAGAGAAAAGGAGAGCAGG  99
      | |||| |||||| |||||||||||||||||||||  ||||||||||| |
seq2  TTTAAATTAAAAT-AAGATAAAGGAAGGAAGGAGAAGAAAGGAGAGCAAG  97

seq1  TGCGGGGGGT-GGGGGGGGATACATAGGGGAATTGGCAGAGAAGCAGAGG  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCGGGGGGTGGGGGGGGGATACATAGGGGAATTGGCAGAGAAGCAGAGG  147

seq1  CAATGTACAGCAGAACCTTGG-AAGAGTTCC-AAGAAAGTTGAA-CCAGC  195
      ||||||||||||||||||||| ||||||||| |||||||||||| |||||
seq2  CAATGTACAGCAGAACCTTGGAAAGAGTTCCAAAGAAAGTTGAACCCAGC  197

seq1  -AAAATAAGGCACC-AGGGAGAGGTCAAATACAAAGAAGCTTGGATAGAA  243
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAAATAAGGCACCAAGGGAGAGGTCAAATACAAAGAAGCTTGGATAGAA  247

seq1  --GTTGTTGGATCTAGCACTTAGCTCTGGGTGTAGCTATACATGTTTGTA  291
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGTTGGATCTAGCACTTAGCTCTGGGTGTAGCTATACATGTTTGTA  297

seq1  ATCCCAAGATTTGGGATATGGAGGCAATAGGATTGGAAGTTCAAGGCCAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAAGATTTGGGATATGGAGGCAATAGGATTGGAAGTTCAAGGCCAG  347

seq1  CCTCATCGATGTAAAGAGTTCAAGGTCAGGTTAGGCAACCCAAGTTCCTA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCGATGTAAAGAGTTCAAGGTCAGGTTAGGCAACCCAAGTTCCTA  397

seq1  TCACCAAAGCAAACAATGTGGATTTCTTTTTTTTCTTTTTTTTGTCCCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAAGCAAACAATGTGGATTTCTTTTTTTTCTTTTTTTTGTCCCAC  447

seq1  CTCCTACCCCACTGTGGATTTCAAAGAATGGAACTGGAAATTTAGGGCAG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTACCCCACTGTGGATTTCAAAGAATGGAACTGGAAATTTAGGGCAG  497

seq1  GGACACTAGTTCTAGCAGCCCTAATGATTAGTCTCTGCCACCCATTCCAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTAGTTCTAGCAGCCCTAATGATTAGTCTCTGCCACCCATTCCAA  547

seq1  CCTGCCAATTAAAGAGACAAGTAATGACATCCAATAACCTCCAGTCGAGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCAATTAAAGAGACAAGTAATGACATCCAATAACCTCCAGTCGAGA  597

seq1  AGCAGAGGCAGGAGCATTCCCACAAATCCAAGGCCAGCTAATTCCAGACT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGAGGCAGGAGCATTCCCACAAATCCAAGGCCAGCTAATTCCAGACT  647

seq1  AGCCAATAAAAGCTACACAAAAATCATACAGAGAGCCTTTAAATATGCTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATAAAAGCTACACAAAAATCATACAGAGAGCCTTTAAATATGCTA  697

seq1  TTTCCAGGACATATTCCTACAATATTCTGGTTCAGTAAGTGCAGAGCAGA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGACATATTCCTACAATATTCTGGTTCAGTAAGTGCAGAGCAGA  747

seq1  GTCCAGGGACTCTGTTTTTAATAAGGGACTCAACTAATGTTAAAGCACCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGGACTCTGTTTTTAATAAGGGACTCAACTAATGTTAAAGCACCA  797

seq1  ATTTGGAAAATTGTTGGCACTTTCTGATGAAGCAAAACTCTTTGACCTGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGAAAATTGTTGGCACTTTCTGATGAAGCAAAACTCTTTGACCTGC  847

seq1  AGATCCACTCCCGTTTTACCCAAAGAGAGAGAAATATATGCCCATAAAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCACTCCCGTTTTACCCAAAGAGAGAGAAATATATGCCCATAAAAG  897

seq1  AACATGAAAGAGAAGGCCCAAAGCAGCAGAATTC  925
      ||||||||||||||||||||||||||||||||||
seq2  AACATGAAAGAGAAGGCCCAAAGCAGCAGAATTC  931