BAC Information

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BAC

Clone NameB6Ng01-202I10
Chromosome1 (Build37)18 (Build37)
Map Location 3,341,811 - 3,341,84512,473,827 - 12,474,877
singlet/doubletsingletsinglet
Overlap geneXkr4
Upstream genenone
Downstream geneLOC100038975, LOC664792, LOC619785, Rp1h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-202I10.bB6Ng01-202I10.g
ACCGA022997GA022998
length7161,050
definitionB6Ng01-202I10.b B6Ng01-202I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(3,341,811 - 3,341,845)(12,473,827 - 12,474,877)
sequence
gaattcacaacagaggaatctcaaatggctgagaagactttaataaatgt
tcaacatccttaatcatcagggaaatgcaaatcaaagcaaccctgagatt
ccacctaacaccagtccgaatggctaagataaaaaactcaggtgacatca
cgtgttggtgaggatgtggagaaagaggaacactcctccattgctggtgg
gattgaaaattggtacaaccactctggaaatcaaactggaggttcctcag
aaattttgaaatagatctacctgaagatcctgttatacaactcttggaca
tataaccaaaagatgctgcaccatgccacaggagcacatgctccactata
ttcatagaggcctaatcggtggtagccagagctggaaagaacccagatgc
cccacaacagaaaaatggatacagaaaatgtggttcatttacacaatgga
atactatcagctattaagaatgaggacattatgagttttgcaggcaaatg
gatggaactagaaaatatcatcctgagtgaggtatctcagaccccaaaag
acatgcatggtatgtactcactgataagtggatattagccaaaagagtac
agaatacccaggatacaacccacagaactcaagaaggttaacaagcagaa
gggcccaagtgaggatgcttcattcctacttgggagggagaagaaaacaa
tcatgggaggcagagg

gaattcttaagcagaacaacagagtttagccacatttaagacagcacccc
ctccccccaactctttcttctcaaagaaatgcaggctgagctaaactcag
gcagtcgtttagggggcacaagcgatttttattggcttttgtgagagtgt
gggattctctggctgaggaggcaaccataaacaaatagtgggagggtctg
ggtgagaaatccaagagacttcactggaagagcaacattagcaagctcac
ggaaaagccatgatcgatcgattgacagctctagtcaaaacagcttatta
cattggtcttcagttgggtaacatgactgtgtcatgtcaatcccaggatg
ggactaatgccttaacgctccatagacaagtcctgtcagtgctggggcac
agagggtgacccagaagccagacatgtggccacacctggtcctagtgggg
atcctctggagttacaaggaacctggaagctctgagtggaaagtggagaa
gcctagaggctgtttcagtgtcccaaagatgcctgggacagtccatgtgg
agtggtcatagcagaccacttgaccagaaaagatgagggtaaggagctcc
agtgccccgagactctggcaaggtaaaaactgattggtagcagaggtgat
atctgataaaggagacctgcgggcaggagcagaaaagccatcaccaaaga
tatgtaagagcaaggaaagcttccggttctgagaaactgggatctgaggc
aggcttcaggatgggtattcagacacaagggtcagatggatctctagagc
tgcacatagtagtctagctttcactgggcgaagatgaggtgctcacatta
catcagggtgtttaaattttaatcatccatttcttttcgatttgagattg
agtcttgctctaatagcaatggttagcctcaaacataccacatataatca
aggaggcctttttgcaacaccactccagcttctgcctcccaaatctggct
ctatggcatgaaacacatgcctgctagaatgtgtgtgtgtgtgtgtgtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_3341811_3341845
seq2: B6Ng01-202I10.b_728_763 (reverse)

seq1  CCTCTGTC-CCCATGATTGTTTTCTTCTCCCTCCCA  35
      |||||| | |||||||||||||||||||||||||||
seq2  CCTCTGCCTCCCATGATTGTTTTCTTCTCCCTCCCA  36


seq1: chr18_12473827_12474877
seq2: B6Ng01-202I10.g_64_1113

seq1  GAATTCTTAAGCAGAACAACAGAGTTTAGCCACATTTAAGACAGCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGCAGAACAACAGAGTTTAGCCACATTTAAGACAGCACCCC  50

seq1  CTCCCCCCAACTCTTTCTTCTCAAAGAAATGCAGGCTGAGCTAAACTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCAACTCTTTCTTCTCAAAGAAATGCAGGCTGAGCTAAACTCAG  100

seq1  GCAGTCGTTTAGGGGGCACAAGCGATTTTTATTGGCTTTTGTGAGAGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCGTTTAGGGGGCACAAGCGATTTTTATTGGCTTTTGTGAGAGTGT  150

seq1  GGGATTCTCTGGCTGAGGAGGCAACCATAAACAAATAGTGGGAGGGTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTCTGGCTGAGGAGGCAACCATAAACAAATAGTGGGAGGGTCTG  200

seq1  GGTGAGAAATCCAAGAGACTTCACTGGAAGAGCAACATTAGCAAGCTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAATCCAAGAGACTTCACTGGAAGAGCAACATTAGCAAGCTCAC  250

seq1  GGAAAAGCCATGATCGATCGATTGACAGCTCTAGTCAAAACAGCTTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAGCCATGATCGATCGATTGACAGCTCTAGTCAAAACAGCTTATTA  300

seq1  CATTGGTCTTCAGTTGGGTAACATGACTGTGTCATGTCAATCCCAGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGTCTTCAGTTGGGTAACATGACTGTGTCATGTCAATCCCAGGATG  350

seq1  GGACTAATGCCTTAACGCTCCATAGACAAGTCCTGTCAGTGCTGGGGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAATGCCTTAACGCTCCATAGACAAGTCCTGTCAGTGCTGGGGCAC  400

seq1  AGAGGGTGACCCAGAAGCCAGACATGTGGCCACACCTGGTCCTAGTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGACCCAGAAGCCAGACATGTGGCCACACCTGGTCCTAGTGGGG  450

seq1  ATCCTCTGGAGTTACAAGGAACCTGGAAGCTCTGAGTGGAAAGTGGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGGAGTTACAAGGAACCTGGAAGCTCTGAGTGGAAAGTGGAGAA  500

seq1  GCCTAGAGGCTGTTTCAGTGTCCCAAAGATGCCTGGGACAGTCCATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGGCTGTTTCAGTGTCCCAAAGATGCCTGGGACAGTCCATGTGG  550

seq1  AGTGGTCATAGCAGACCACTTGACCAGAAAAGATGAGGGTAAGGAGCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCATAGCAGACCACTTGACCAGAAAAGATGAGGGTAAGGAGCTCC  600

seq1  AGTGCCCCGAGACTCTGGCAAGGTAAAAACTGATTGGTAGCAGAGGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCCGAGACTCTGGCAAGGTAAAAACTGATTGGTAGCAGAGGTGAT  650

seq1  ATCTGATAAAGGAGACCTGCGGGCAGGAGCAGAAAAGCCATCACCAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAAAGGAGACCTGCGGGCAGGAGCAGAAAAGCCATCACCAAAGA  700

seq1  TATGTAAGAGCAAGGAAAGCTTCCGGTTCTGAGAAACTGGGATCTGAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGAGCAAGGAAAGCTTCCGGTTCTGAGAAACTGGGATCTGAGGC  750

seq1  AGGCTTCAGGATGGGTATTCAGACACAAGGGTCAGATGGATCTCTAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCAGGATGGGTATTCAGACACAAGGGTCAGATGGATCTCTAGAGC  800

seq1  TGCACATAGTAGTCTAGCTTTCACTGGGCGAAGATGAGGTGCTCACATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATAGTAGTCTAGCTTTCACTGGGCGAAGATGAGGTGCTCACATTA  850

seq1  CATCAGGGTGTTTAAATTTTAATCATCCATTTCTTTTCGATTTGAGATTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGGTGTTTAAATTTTAATCATCCATTTCTTTTCGATTTGAGATTG  900

seq1  AGTCTTGCTCT-ATAGCAATGGTTAGCCTCAAACATACCACATATAATC-  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||| 
seq2  AGTCTTGCTCTAATAGCAATGGTTAGCCTCAAACATACCACATATAATCA  950

seq1  AGGAGGCCTTTTTGCAACACCACTCCAGCTTCTGCCTCCCAAATTCTGGC  998
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAGGCCTTTTTGCAACACCACTCCAGCTTCTGCCTCCCAAA-TCTGGC  999

seq1  TCTATGGGCATGAAACACCATGCCTGGCTAG-ATGTGTGTGTGTGTGTGT  1047
      ||||| ||||||||||| ||||||| ||||| ||||||||||||||||||
seq2  TCTAT-GGCATGAAACA-CATGCCT-GCTAGAATGTGTGTGTGTGTGTGT  1046

seq1  GTGC  1051
      ||||
seq2  GTGC  1050


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