BAC Information

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BAC

Clone NameB6Ng01-211B22
Chromosome18 (Build37)
Map Location 10,182,480 - 10,337,908
singlet/doubletdoublet
Overlap geneLOC635344, LOC435554, AK220484
Upstream geneFzd8, 9430022F06Rik, Ccny, LOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978
Downstream geneLOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211B22.bB6Ng01-211B22.g
ACCGA029283GA029284
length2831,123
definitionB6Ng01-211B22.b B6Ng01-211B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,337,637 - 10,337,908)(10,182,480 - 10,183,633)
sequence
tatcaccgccactggatagcaaccacttgctcagtcagaaaactataaag
aaaaaatattttttcaggaagtgacaaattcatttagaaaaataattact
tcttctccaaataaaaaccaagagatgccgggtgtggtggcccacgcctt
taatcccagcactcgggaggcagaggcaggcagatttctgagttcgaggc
cagcctggtctacaaagtgagttccaggacagccagggctatacagagaa
accctgtctcgaaaaaaaatcaaacaaacaaac
gaattctgacaagaaaagaaggcgcttgttatcactgagataattacttt
ttgcgggctaggagggtgcttttcttctggcggtaccagagagttatttc
agcaccagtcgagtttggattttccggagcactctggtgggtttttcttg
atgcccaccacgcagaatctgtttacgtgggaaaatcaccacgcactcag
cgttcccaagctgtgtgtcaagggagccttaaaatgttgactctggaaga
tagaatcattagaactcaaaaacagtttaattaaagaggaaaaattcata
ggaaaatcaatgtttgtaagctatttctattcgtttctcacagcaacttg
tagttctgtcctgtctgtgagattctgcaacttcagggcatttagtaaaa
tttaaaatcgtggtttttattacaactaaagtgggatatgaaaataacgg
gcatttcccaattcagtttttcactgactgtagggtgacaggctgaaaaa
ggtttctgattatggttttcactgccttcagtaggtgtccaacctgtatt
tgattctaatcaacccttggatttgatcatagatcaagtgaaagatttct
ggttgaacatgtgtggtttcaccgcacgctggaaaatactctagatgaac
caaatgtccccatattaaaaaagcaatgcatggcgtctgaacagtacatc
agcaagggagccaattaggaaaacactatattgttggaaaatttttattc
cttcttttcattttattaggtacaagaaatgtttagctataaagtccact
gtgtaaatcaagataggaagtaagttttcacagaaagttatagccaaaat
aaaaaccagggacaaacttcagtatttcattaaatgcttttgcaatgact
tttcttggccccagtattttaagtcagtcatgtgaattagattattttta
agcatagggctttaaatatctggcagtttcctgaaataaattcctaacct
gctgtcctttattttattaccatttaggtatctgggttttgatttgggat
ctttttcctcagaactgaaccattatggtgttttccatttggtaacgtca
aaaagtacaggatgtagacacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_10337637_10337908
seq2: B6Ng01-211B22.b_45_316 (reverse)

seq1  TTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGACTGTCCTGGAACTCAC  50
      ||||| |||||||||||||||||| |||||||| ||||||||||||||||
seq2  TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCAC  50

seq1  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTC  100

seq1  CCGAGTGCTGGGATTAAAGGCGTGGGCCACCACACCCGGCATCTCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTGCTGGGATTAAAGGCGTGGGCCACCACACCCGGCATCTCTTGGT  150

seq1  TTTTATTTGGAGAAGAAGTAATTATTTTTCTAAATGAATTTGTCACTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGGAGAAGAAGTAATTATTTTTCTAAATGAATTTGTCACTTCC  200

seq1  TGAAAAAATATTTTTTCTTTATAGTTTTCTGACTGAGCAAGTGGTTGCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAATATTTTTTCTTTATAGTTTTCTGACTGAGCAAGTGGTTGCTA  250

seq1  TCCAGTGGCGGTGATAGAATTC  272
      ||||||||||||||||||||||
seq2  TCCAGTGGCGGTGATAGAATTC  272

seq1: chr18_10182480_10183633
seq2: B6Ng01-211B22.g_66_1188

seq1  GAATTCTGACAAGAAAAGAAGGCGCTTGTTATCACTGAGATAATTACTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGACAAGAAAAGAAGGCGCTTGTTATCACTGAGATAATTACTTT  50

seq1  TTGCGGGCTAGGAGGGTGCTTTTCTTCTGGCGGTACCAGAGAGTTATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGGGCTAGGAGGGTGCTTTTCTTCTGGCGGTACCAGAGAGTTATTTC  100

seq1  AGCACCAGTCGAGTTTGGATTTTCCGGAGCACTCTGGTGGGTTTTTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGTCGAGTTTGGATTTTCCGGAGCACTCTGGTGGGTTTTTCTTG  150

seq1  ATGCCCACCACGCAGAATCTGTTTACGTGGGAAAATCACCACGCACTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCACCACGCAGAATCTGTTTACGTGGGAAAATCACCACGCACTCAG  200

seq1  CGTTCCCAAGCTGTGTGTCAAGGGAGCCTTAAAATGTTGACTCTGGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCCCAAGCTGTGTGTCAAGGGAGCCTTAAAATGTTGACTCTGGAAGA  250

seq1  TAGAATCATTAGAACTCAAAAACAGTTTAATTAAAGAGGAAAAATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATCATTAGAACTCAAAAACAGTTTAATTAAAGAGGAAAAATTCATA  300

seq1  GGAAAATCAATGTTTGTAAGCTATTTCTATTCGTTTCTCACAGCAACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATCAATGTTTGTAAGCTATTTCTATTCGTTTCTCACAGCAACTTG  350

seq1  TAGTTCTGTCCTGTCTGTGAGATTCTGCAACTTCAGGGCATTTAGTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTCTGTCCTGTCTGTGAGATTCTGCAACTTCAGGGCATTTAGTAAAA  400

seq1  TTTAAAATCGTGGTTTTTATTACAACTAAAGTGGGATATGAAAATAACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCGTGGTTTTTATTACAACTAAAGTGGGATATGAAAATAACGG  450

seq1  GCATTTCCCAATTCAGTTTTTCACTGACTGTAGGGTGACAGGCTGAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCAATTCAGTTTTTCACTGACTGTAGGGTGACAGGCTGAAAAA  500

seq1  GGTTTCTGATTATGGTTTTCACTGCCTTCAGTAGGTGTCCAACCTGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTGATTATGGTTTTCACTGCCTTCAGTAGGTGTCCAACCTGTATT  550

seq1  TGATTCTAATCAACCCTTGGATTTGATCATAGATCAAGTGAAAGATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTAATCAACCCTTGGATTTGATCATAGATCAAGTGAAAGATTTCT  600

seq1  GGTTGAACATGTGTGGTTTCACCGCACGCTGGAAAATACTCTAGATGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACATGTGTGGTTTCACCGCACGCTGGAAAATACTCTAGATGAAC  650

seq1  CAAATGTCCCCATATTAAAAAAGCAATGCATGGCGTCTGAACAGTACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCCCCATATTAAAAAAGCAATGCATGGCGTCTGAACAGTACATC  700

seq1  AGCAAGGGAGCCAATTAGGAAAACACTATATTGTTGGAAAATTTTTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGAGCCAATTAGGAAAACACTATATTGTTGGAAAATTTTTATTC  750

seq1  CTTCTTTTCATTTTATTAGGTACAAGAAATGTTTAGCTATAAAGTCCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCATTTTATTAGGTACAAGAAATGTTTAGCTATAAAGTCCACT  800

seq1  GTGTAAATCAAGATAGGAAGTAAGTTTTCACAGAAAGTTATAGCCAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAATCAAGATAGGAAGTAAGTTTTCACAGAAAGTTATAGCCAAAAT  850

seq1  AAAAACCAGGGACAAACTTCAGGTATTTCATTAAATGCTTTTGCAATGAC  900
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAAAACCAGGGACAAACTTCA-GTATTTCATTAAATGCTTTTGCAATGAC  899

seq1  TTTTCTTGGCCCCAGTATTTTAAGTCAGTCATGTGAATTAGATTTATTTT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTTTCTTGGCCCCAGTATTTTAAGTCAGTCATGTGAATTAGA-TTATTTT  948

seq1  TAAGCATAGGGCTTAAAATAATCTGGCAGTTTCCCTGAAATAAATTTCCT  1000
      |||||||||||||| |||| |||||||||||| ||||||||||| |||||
seq2  TAAGCATAGGGCTTTAAAT-ATCTGGCAGTTT-CCTGAAATAAA-TTCCT  995

seq1  AAACCCTGCCTGTCCTTTATTTTATTACCATTTTTAGGTATTCTTGGGGT  1050
      ||  |||| |||||||||||||||||||||  |||||||| |||  ||||
seq2  AA--CCTG-CTGTCCTTTATTTTATTACCA--TTTAGGTA-TCT--GGGT  1037

seq1  TTTTGGTTTTTGGGTTTCTTTTTTCCTCAGAGAACTGAA-CATTATGTTG  1099
      |||     |||||| |   |||||||||  ||||||||| ||||||| ||
seq2  TTT---GATTTGGGAT--CTTTTTCCTC--AGAACTGAACCATTATGGTG  1080

seq1  TTTTCCATTTGGAAACGCACAAAAAAGTACAGGTAGTTAAGACAACAAGA  1149
      |||||||||||| ||||    ||||||||||||  ||          |||
seq2  TTTTCCATTTGGTAACG--TCAAAAAGTACAGGATGT----------AGA  1118

seq1  CACCA  1154
      |||||
seq2  CACCA  1123