BAC Information

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BAC

Clone NameB6Ng01-213O17
Chromosome18 (Build37)
Map Location 71,613,216 - 71,743,154
singlet/doubletdoublet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneLOC629684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213O17.bB6Ng01-213O17.g
ACCGA031308GA031309
length1,1431,028
definitionB6Ng01-213O17.b B6Ng01-213O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,742,020 - 71,743,154)(71,613,216 - 71,614,239)
sequence
gaattctttctcagaattttactagctgtgctgcctttggtcaatgagta
attattagtctgtatatctaaaaatataaaattaatagtggtatgcggtg
tgtgtttatgtgtgtgtgtgtgtgttgcattgatgtattttagacttaac
attcttataatggtggcttgcacattgaagaacacatgaagcaataactg
ataccaaagctccaggaagagtctagtatgagcctactttgaaaagctga
agaaactggagttagttttctacaagggatggcagcccctgtggacacat
tcaccatagaggaccagagcttgcaaactcatcctgatttgattccacct
tgtactttaccctttgactgtcctaccatagtactccttcagttggttgc
cctacatgctgcttctggaaacatctacagacacacccagaacattgtct
gattaattttctactggtcttctaatctagtcaccttgacaatcaagata
aagcatataaaatttgtaattttgtttccgtgtgtggggtgacaacattt
ggtatataagattgtgatacgtattaagtgaagcttatacatgtatctga
aacatcacttctttgcccatggcaacaaaaacaagctgttcctgttaact
agtgccatatataaaaaattgtgtgggttcaaaaattaaaatatatgaaa
tacaggggcattccctgacacttacttagaggagggatttattgctttca
taaacattattccatttgacccccagatatgttgttatgataattttcca
tttatagaagagaatgttcagaaagactgagaaatagtacctaagcagct
ttgccaatagtagacagtagaaccaggatgcagatgcaaggtgatccctt
caccctacacacaaataagaaatatcttcctttaaaggaacaagtaaata
cagtaggcgttcagatgagagaattaaaacactctatagcatcattccac
tttaatctttcacagtagccctggtgagataggtagaatagttgggtatt
tttcattttgccaatgaggcaatgggaggcttctctaaccacctccgaca
tgtttccaaggttcaacttgcttcctttggaataaaaaaaaaa

gaattccatagcattaagctgtggaggggaaaaccaaagcaatagagagc
tgggatgttgtttatggcagagacattaatggtgtggaaagctgaggtaa
agaataaatagaacaagcaaagaaggagtaccttatgcttgcagcttgta
gaggagttagatgtgtggggctacccaagcatgatggagactaatgatgt
ctctaggagttctagatgctggccatggagctgaagaatttggtggttgt
ctttctctgcttgatcttgcttgcagttgatcttttattattatatacca
caaattccttcttataacagaagtacttattctttctttattttttattt
ttattttttactccagattttattcccctccgggtctaccctctgactgt
ttcatatcccatacctcctcccctccccttgtctcctttataatcatgta
gaagtacatttttattcactaaaagatgaaggcaacttattgaaggttta
ctcatgtttccttaaaacacaatagataatttcattttcccataatatgt
gtttaaaaattccagtggccaatgagaaacatgttactactaaaacacac
acacacacacacacacacacacacacactcagaaaaaaaagaaagagaga
atatcctatttatgaaagggtagaatagaaagttggacatccaggaggag
gaaaagtctgagatcgagccacgtaagagctttgcctagggaaatgtgaa
aagagagacacatagtacatgagcacaggtaatcagtcacatggaagaat
gtagattaaaataagtgggataaatttaagttatgctctaataagataaa
gcctagctatgtggccaagacatttaataatatattttggagtctgagtc
tatttctgttgggaggaagaaccatgcataacttctacagcagagacaga
cagagaaactgagacacaccagacagactaacagactgatcgactgactg
acagacggacggacggacggactgacgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71742020_71743154
seq2: B6Ng01-213O17.b_48_1190 (reverse)

seq1  TTTTTTTTCTATTCCAAA-GAAGCAGGT--GACCTTG--AACATGTCG--  43
      |||||||| ||||||||| |||||| ||   ||||||  |||||||||  
seq2  TTTTTTTTTTATTCCAAAGGAAGCAAGTTGAACCTTGGAAACATGTCGGA  50

seq1  GGTG--TCTGGGAGCCTCCCA-TGCTTCATTTGCAAAATG-AAAATACCC  89
      ||||  |   | ||||||||| ||| ||||| |||||||| |||||||||
seq2  GGTGGTTAGAGAAGCCTCCCATTGCCTCATTGGCAAAATGAAAAATACCC  100

seq1  ACCTTATTCTACCTATCTCA-CAGGGCTACTGTG-AAGATTAAAGTGG-A  136
      | | |||||||||||||||| ||||||||||||| ||||||||||||| |
seq2  AAC-TATTCTACCTATCTCACCAGGGCTACTGTGAAAGATTAAAGTGGAA  149

seq1  TGATGCTTATAGAAGTGTTTTAATTCTCTCATCTGAACGCCTACTGTATT  186
      |||||| ||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGATGC-TATAG-AGTGTTTTAATTCTCTCATCTGAACGCCTACTGTA-T  196

seq1  TTACTTGTTCCTTTTAAAGGAAGATATTTCTTATTTTGTGTGTAGGGTGA  236
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTACTTGTTCC-TTTAAAGGAAGATATTTCTTA-TTTGTGTGTAGGGTGA  244

seq1  AGGGATCACCTTGCATCTGCATCCTGGTTCTACTGTCTACTATTGGCAAA  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCACCTTGCATCTGCATCCTGGTTCTACTGTCTACTATTGGCAAA  294

seq1  GCTGCTTAGGTACTATTTCTCAGTCTTTCTGAACATTCTCTTCTATAAAT  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTAGGTACTATTTCTCAGTCTTTCTGAACATTCTCTTCTATAAAT  344

seq1  GG-AAATTATCATAACAACATTATCTGGGGGTCAAATGGAATAATGTTTA  385
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAAATTATCATAACAACA-TATCTGGGGGTCAAATGGAATAATGTTTA  393

seq1  TGAAAGCAATAAATCCCTCCTCTAAGTAAGTGTCAGGGAATGCCCCTGTA  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCAATAAATCCCTCCTCTAAGTAAGTGTCAGGGAATGCCCCTGTA  443

seq1  TTTCATATATTTTAATTTTTGAACCCACACAATTTTTTATATATGGCACT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATATATTTTAATTTTTGAACCCACACAATTTTTTATATATGGCACT  493

seq1  AGTTAACAGGAACAGCTTGTTTTTGTTGCCATGGGCAAAGAAGTGATGTT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACAGGAACAGCTTGTTTTTGTTGCCATGGGCAAAGAAGTGATGTT  543

seq1  TCAGATACATGTATAAGCTTCACTTAATACGTATCACAATCTTATATACC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATACATGTATAAGCTTCACTTAATACGTATCACAATCTTATATACC  593

seq1  AAATGTTGTCACCCCACACACGGAAACAAAATTACAAATTTTATATGCTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGTCACCCCACACACGGAAACAAAATTACAAATTTTATATGCTT  643

seq1  TATCTTGATTGTCAAGGTGACTAGATTAGAAGACCAGTAGAAAATTAATC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGATTGTCAAGGTGACTAGATTAGAAGACCAGTAGAAAATTAATC  693

seq1  AGACAATGTTCTGGGTGTGTCTGTAGATGTTTCCAGAAGCAGCATGTAGG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGTTCTGGGTGTGTCTGTAGATGTTTCCAGAAGCAGCATGTAGG  743

seq1  GCAACCAACTGAAGGAGTACTATGGTAGGACAGTCAAAGGGTAAAGTACA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACCAACTGAAGGAGTACTATGGTAGGACAGTCAAAGGGTAAAGTACA  793

seq1  AGGTGGAATCAAATCAGGATGAGTTTGCAAGCTCTGGTCCTCTATGGTGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAATCAAATCAGGATGAGTTTGCAAGCTCTGGTCCTCTATGGTGA  843

seq1  ATGTGTCCACAGGGGCTGCCATCCCTTGTAGAAAACTAACTCCAGTTTCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCCACAGGGGCTGCCATCCCTTGTAGAAAACTAACTCCAGTTTCT  893

seq1  TCAGCTTTTCAAAGTAGGCTCATACTAGACTCTTCCTGGAGCTTTGGTAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTCAAAGTAGGCTCATACTAGACTCTTCCTGGAGCTTTGGTAT  943

seq1  CAGTTATTGCTTCATGTGTTCTTCAATGTGCAAGCCACCATTATAAGAAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTGCTTCATGTGTTCTTCAATGTGCAAGCCACCATTATAAGAAT  993

seq1  GTTAAGTCTAAAATACATCAATGCAACACACACACACACACATAAACACA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTAAAATACATCAATGCAACACACACACACACACATAAACACA  1043

seq1  CACCGCATACCACTATTAATTTTATATTTTTAGATATACAGACTAATAAT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGCATACCACTATTAATTTTATATTTTTAGATATACAGACTAATAAT  1093

seq1  TACTCATTGACCAAAGGCAGCACAGCTAGTAAAATTCTGAGAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATTGACCAAAGGCAGCACAGCTAGTAAAATTCTGAGAAAGAATTC  1143


seq1: chr18_71613216_71614239
seq2: B6Ng01-213O17.g_66_1093

seq1  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGCATTAAGCTGTGGAGGGGAAAACCAAAGCAATAGAGAGC  50

seq1  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTGTTTATGGCAGAGACATTAATGGTGTGGAAAGCTGAGGTAA  100

seq1  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAAATAGAACAAGCAAAGAAGGAGTACCTTATGCTTGCAGCTTGTA  150

seq1  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTTAGATGTGTGGGGCTACCCAAGCATGATGGAGACTAATGATGT  200

seq1  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGAGTTCTAGATGCTGGCCATGGAGCTGAAGAATTTGGTGGTTGT  250

seq1  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTTGATCTTGCTTGCAGTTGATCTTTTATTATTATATACCA  300

seq1  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCCTTCTTATAACAGAAGTACTTATTCTTTCTTTATTTTTTATTT  350

seq1  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTACTCCAGATTTTATTCCCCTCCGGGTCTACCCTCTGACTGT  400

seq1  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCCCATACCTCCTCCCCTCCCCTTGTCTCCTTTATAATCATGTA  450

seq1  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTACATTTTTATTCACTAAAAGATGAAGGCAACTTATTGAAGGTTTA  500

seq1  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTTTCCTTAAAACACAATAGATAATTTCATTTTCCCATAATATGT  550

seq1  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAAAATTCCAGTGGCCAATGAGAAACATGTTACTACTAAAACACAC  600

seq1  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTCAGAAAAAAAAGAAAGAGAGA  650

seq1  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTATTTATGAAAGGGTAGAATAGAAAGTTGGACATCCAGGAGGAG  700

seq1  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTCTGAGATCGAGCCACGTAAGAGCTTTGCCTAGGGAAATGTGAA  750

seq1  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGACACATAGTACATGAGCACAGGTAATCAGTCACATGGAAGAAT  800

seq1  GTAGATTAAAATAAGTGGGATAAATTTAAGTTATGCTCTAATAAGATAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTAAAATAAGTGGGATAAATTTAAGTTATGCTCTAATAAGATAAA  850

seq1  GCCTAGCTATGTGGCCAAGACATTT-ATAATATATTTT-GAGTCTGAGTC  898
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GCCTAGCTATGTGGCCAAGACATTTAATAATATATTTTGGAGTCTGAGTC  900

seq1  TTATTTCTGTTGGGAGGAAGAACCATGCATAACTTCTACAGCAAGAGACA  948
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  -TATTTCTGTTGGGAGGAAGAACCATGCATAACTTCTACAGC-AGAGACA  948

seq1  GACAGAGAAACTGAGACACACCAGACAGACAAACAGACAGACAGACAGAC  998
      |||||||||||||||||||||||||||||| ||||||| ||  ||| |||
seq2  GACAGAGAAACTGAGACACACCAGACAGACTAACAGACTGATCGACTGAC  998

seq1  AGACAGACGGACGGACGGACGGACGG----  1024
       ||||||||||||||||||||||| |    
seq2  TGACAGACGGACGGACGGACGGACTGACGG  1028


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