BAC Information

Click to search

BAC

Clone NameB6Ng01-214D02
Chromosome18 (Build37)
Map Location 87,257,584 - 87,358,437
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
Downstream geneLOC383318, Ppia-ps18_1039.1, LOC329008, LOC100039961
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214D02.bB6Ng01-214D02.g
ACCGA031509GA031510
length5991,161
definitionB6Ng01-214D02.b B6Ng01-214D02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,257,584 - 87,258,145)(87,357,273 - 87,358,437)
sequence
cggggggaggagggatctcggcgggattttcataatttgaaaatcacaaa
gaaaaacatggagcaatactcaaaaggcatgtattctcgtatccactgga
aaatatggaccacatgggaatctataacttcctctacctcttcctctcta
cactgaatacaatgaagaaccatcatttccatctacagcaactgtgggga
cacatttggataatccagacatttatataagacagttgctgtggtttatc
taaccgttgatgatcaaaggctttatcagcaatacgtgctctaatcccaa
gccccaggctcagccgtattctgtttattcagtgtttcataatgaattcc
caccccattgattttggtcatctgacaacatgaggtcttaatatatctac
acaagagttttaacttcagtattagaaatacttggcttttaataggaatt
tttatgcaatatattctgcttttgttttttactcctcaactcctccaagt
ttcaccacacctttcttcctattcagatcataactttctgttcttctctt
ataaaacaagcaggcatctaaaaaataatattaaaataaaataaaatca
gaattcatgaaaaaatatctgtattcagaaactggcttaagtttcactga
aatacaaaaggcaggtcttcttatcctaatgtgaattgggatctatgtat
aagttcaataaatctgaacctctttatggtttaattgctgtcttcttaga
gtgtgtggtttcttttttaaattttagagattttacaggaggtaattggc
actaatgtaggtcagcaacactggtggtctagttaagaaggtctacaaaa
ctggttgaaattccctttccactgttaatgagaaaggaaagcattttaat
acaatgctcattttcctcccataatttttctatagcatacctacatgagt
ttctagataaccatctgttttagaacccatttgtgtccacatgacaccta
ttagttagaattatgagacaggtaatatttagctgaattagtaatcagaa
tgcttgaatgcttcaacgacatttataattaactgttgtgtaaaataaca
agcaggaacaacagctgcaacatacctcctattaggcaataaaaataggg
aatgattaaaatttattgagggccccaagctcatttccaatccattgaat
ggcatgttagggaaattgaacaaatccttaggacacctcacatcccagta
aggcataaattgggaactacttctgaaaataaagaatcactgaaaatcac
ccacaataattaaaaaaaaatagagaatgagtcctcaccttagagttctg
tctacacatatgcagacccagaatctacatagaaaactgttttcaattgt
tgtagtttccagtctcttaatatttttctttcaatatgtgtagatcattg
aatggtgacaaaaaatataaaagtcatttccaaatgtaatttagaatgat
acttgcctaataaaaacatgtgtagctattaaaactactagtaatactta
acagagatactgacacttagcctatacagatatacagctattttcttctg
tcagtttattttacttagaaattaaaagtacatacaatattatcctaaat
tataattttctctccctcaaatcttcccaggtcctccagcttcacgtttg
cccttccgtctctccatcttcactccactctggaacccatacttttaatt
cattaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87257584_87258145
seq2: B6Ng01-214D02.b_37_599

seq1  TTGAAAAACACAAAGAAAAACATGGAGCAATACTCAAAAGGCATGTATTC  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAATCACAAAGAAAAACATGGAGCAATACTCAAAAGGCATGTATTC  50

seq1  TCGTATCCACTGGAAAATATGGACCACATGGGAATCTATAACTTCCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTATCCACTGGAAAATATGGACCACATGGGAATCTATAACTTCCTCTA  100

seq1  CCTCTTCCTCTCTACACTGAATACAATGAAGAACCATCATTTCCATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTCTCTACACTGAATACAATGAAGAACCATCATTTCCATCTAC  150

seq1  AGCAACTGTGGGGACACATTTGGATAATCCAGACATTTATATAAGACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTGTGGGGACACATTTGGATAATCCAGACATTTATATAAGACAGT  200

seq1  TGCTGTGGTTTATCTAACCGTTGATGATCAAAGGCTTTATCAGCAATACG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTTTATCTAACCGTTGATGATCAAAGGCTTTATCAGCAATACG  250

seq1  TGCTCTAATCCCAAGCCCCAGGCTCAGCCGTATTCTGTTTATTCAGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAATCCCAAGCCCCAGGCTCAGCCGTATTCTGTTTATTCAGTGTT  300

seq1  TCATAATGAATTCCCACCCCATTGATTTTGGTCATCTGACAACATGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATGAATTCCCACCCCATTGATTTTGGTCATCTGACAACATGAGGT  350

seq1  CTTAATATATCTACACAAGAGTTTTAACTTCAGTATTAGAAATACTTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATATCTACACAAGAGTTTTAACTTCAGTATTAGAAATACTTGGC  400

seq1  TTTTAATAGGAATTTTTATGCAATATATTCTGCTTTTGTTTTTTACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAGGAATTTTTATGCAATATATTCTGCTTTTGTTTTTTACTCCT  450

seq1  CAACTCCTCCAAGTTTCACCACACCTTTCTTCCTATTCAGATCATAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTCCAAGTTTCACCACACCTTTCTTCCTATTCAGATCATAACTT  500

seq1  TCTG-TCTTCTCTTAGAAAACAAGCAGGCATCTAAAAAATAATATTAAAA  549
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTCTCTTATAAAACAAGCAGGCATCTAAAAAATAATATTAAAA  550

seq1  TAAAATAAAATCA  562
      |||||||||||||
seq2  TAAAATAAAATCA  563

seq1: chr18_87357273_87358437
seq2: B6Ng01-214D02.g_68_1228 (reverse)

seq1  TTTTCCTAATGAAATATAAAAAAGTAGTGGTTTCAGAGTGGAGTGGAAGG  50
      ||||| ||||||| |    |||||||  |||| ||||||||||||  | |
seq2  TTTTCTTAATGAATT----AAAAGTATGGGTTCCAGAGTGGAGTG--AAG  44

seq1  ATGGAGAAGGAAGGGAAGGGCAAAGGAAGGAAGCTTGGGAGGAACTGGGA  100
      |||||||    | ||||||||||| |   ||||||  |||||| ||||||
seq2  ATGGAGA---GACGGAAGGGCAAACG--TGAAGCT--GGAGGACCTGGGA  87

seq1  AGATTGGAGGGAGAGAAAATTATAA-TTAGGAT-ATATTGTATGTACTTT  148
      ||||| ||||||||||||||||||| ||||||| ||||||||||||||||
seq2  AGATTTGAGGGAGAGAAAATTATAATTTAGGATAATATTGTATGTACTTT  137

seq1  TAATTTCTAAGTAAAATAAACTGACAGA--GAAATAGCTGTATATCTGTA  196
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  TAATTTCTAAGTAAAATAAACTGACAGAAGAAAATAGCTGTATATCTGTA  187

seq1  TA-GCTAAGTGTCAGTATCTCTGTTAAGTATTACTAGTAGTTTT-ATAGC  244
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGGCTAAGTGTCAGTATCTCTGTTAAGTATTACTAGTAGTTTTAATAGC  237

seq1  TACACATG-TTTTATTAGGCAAGTATCATTCTAAATTACATTTGG-AATG  292
      |||||||| |||||||||||||||||||||||||||||||||||| ||||
seq2  TACACATGTTTTTATTAGGCAAGTATCATTCTAAATTACATTTGGAAATG  287

seq1  ACTTTTATATTTTTTGTCACCATTCAATGATCTACACATATTGAAAGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTATATTTTTTGTCACCATTCAATGATCTACACATATTGAAAGAAA  337

seq1  AATATTAAGAGACTGG-AACTACAACAATTGAAAACAGTTTTCTATGTAG  391
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATATTAAGAGACTGGAAACTACAACAATTGAAAACAGTTTTCTATGTAG  387

seq1  ATTCTGGGTCTGCATATGTGTAGACAGAACTCTAAGGTGAGGACTCATTC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGTCTGCATATGTGTAGACAGAACTCTAAGGTGAGGACTCATTC  437

seq1  TCTATTTTTTTTTAATTATTGTGGGTGATTTTCAGTGATTCTTTATTTTC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTTTTAATTATTGTGGGTGATTTTCAGTGATTCTTTATTTTC  487

seq1  AGAAGTAGTTCCCAATTTATGCCTTACTGGGATGTGAGGTGTCCTAAGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAGTTCCCAATTTATGCCTTACTGGGATGTGAGGTGTCCTAAGGA  537

seq1  TTTGTTCAATTTCCCTAACATGCCATTCAATGGATTGGAAATGAGCTTGG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCAATTTCCCTAACATGCCATTCAATGGATTGGAAATGAGCTTGG  587

seq1  GGCCCTCAATAAATTTTAATCATTCCCTATTTTTATTGCCTAATAGGAGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCAATAAATTTTAATCATTCCCTATTTTTATTGCCTAATAGGAGG  637

seq1  TATGTTGCAGCTGTTGTTCCTGCTTGTTATTTTACACAACAGTTAATTAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTGCAGCTGTTGTTCCTGCTTGTTATTTTACACAACAGTTAATTAT  687

seq1  AAATGTCGTTGAAGCATTCAAGCATTCTGATTACTAATTCAGCTAAATAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCGTTGAAGCATTCAAGCATTCTGATTACTAATTCAGCTAAATAT  737

seq1  TACCTGTCTCATAATTCTAACTAATAGGTGTCATGTGGACACAAATGGGT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTCTCATAATTCTAACTAATAGGTGTCATGTGGACACAAATGGGT  787

seq1  TCTAAAACAGATGGTTATCTAGAAACTCATGTAGGTATGCTATAGAAAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAACAGATGGTTATCTAGAAACTCATGTAGGTATGCTATAGAAAAA  837

seq1  TTATGGGAGGAAAATGAGCATTGTATTAAAATGCTTTCCTTTCTCATTAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGGAGGAAAATGAGCATTGTATTAAAATGCTTTCCTTTCTCATTAA  887

seq1  CAGTGGAAAGGGAATTTCAACCAGTTTTGTAGACCTTCTTAACTAGACCA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAAGGGAATTTCAACCAGTTTTGTAGACCTTCTTAACTAGACCA  937

seq1  CCAGTGTTGCTGACCTACATTAGTGCCAATTACCTCCTGTAAAATCTCTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTTGCTGACCTACATTAGTGCCAATTACCTCCTGTAAAATCTCTA  987

seq1  AAATTTAAAAAAGAAACCACACACTCTAAGAAGACAGCAATTAAACCATA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAAAGAAACCACACACTCTAAGAAGACAGCAATTAAACCATA  1037

seq1  AAGAGGTTCAGATTTATTGAACTTATACATAGATCCCAATTCACATTAGG  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTCAGATTTATTGAACTTATACATAGATCCCAATTCACATTAGG  1087

seq1  ATAAGAAGACCTGCCTTTTGTATTTCAGTGAAACTTAAGCCAGTTTCTGA  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGACCTGCCTTTTGTATTTCAGTGAAACTTAAGCCAGTTTCTGA  1137

seq1  ATACAGATATTTTTTCATGAATTC  1165
      ||||||||||||||||||||||||
seq2  ATACAGATATTTTTTCATGAATTC  1161