BAC Information

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BAC

Clone NameB6Ng01-216J17
Chromosome18 (Build37)18 (Build37)
Map Location 71,121,046 - 71,122,09061,753,107 - 61,753,664
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216J17.bB6Ng01-216J17.g
ACCGA033254GA033255
length1,054890
definitionB6Ng01-216J17.b B6Ng01-216J17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(71,121,046 - 71,122,090)(61,753,107 - 61,753,664)
sequence
gaattcttaggccttcctgggattcccccccccaccccgccccctgcact
tcttttgagcccaacctgtctcaggtgaaagggacacaatctcactgaga
caactgtgagcattataggaaaataggaagtccttcaacttttaagacag
ggccatgtacttatcttgagaaattccttgtgtcacatataaatcctgtg
agtccccactatgagacaacctttccgcttacttttttaaatttcatttt
ttgcataataaacaattgactcttgaagctctcaattgttaattggtgcc
ttaaatgaagtgatgttgtattcctatggttgcttctccatgtgaaatgt
attaacattcatttttaaaggcttaatcaggcaaatttttatttcaataa
tctaccctgaaaagtttctagttgatgaaaatgtcaaacccaaaaagaaa
agaatctttaatttgctaagtgccttacgtttttgacaatactaagtggg
cttgttcaacactttctggcagaactcagcgagttattaaatatagaaat
ggagataatcagtatttctcatcatatagttcttcatgattgaggctaag
ctttttcttactcttttctcatttgtgtctcttctccgtgtaggatcatc
ttgtctgttctattttctttacagtatttagtctttaaaacagtgctctt
caacacccttaatgttcaaacccttttattcaattcttcatattatggtg
accccgaccatacaattatttttgttggaacttcatagttgtgattttgc
tattgcactaaatcattactgaaaatattttagttggatagaagtttgcc
aaagggtcgcacccaatgtgttgagaacggttaaattacaaagcacagat
ggaatgtatcggaggcatcacgcatgctcgcatttaggattaacacccct
tcactgttcagttccgtatcttaaagtttatagattgctcccagagaaac
atgacctctccactctttgggtgtgagaaacacccagtgcaggagggagg
ggag
gaattcactaccttcttttcataacatcatttgcttcattcttctttggg
ggggggggataactaggggcccctttccaaccactaacatctgtgataaa
tgatgaatggaaaattttatcttcagggcttcaacagaagaggataggag
ctcagggctcactgggaacacatcaacaaagcctcgaaatatacatccaa
gctcctgtttgggtttagtttttacttgaaattctaaaaatagatggttg
aatgataaatattggaagccaatttggtctacaaagtatggagttgaatg
gcgctacatgccattttttgaatagggaaaggaaatgttctaaattactt
ccaccagagctttatatatatgtttgtgtgtgtgtaggtccggctgaatt
tccagcccgtccaactaatttccgacttgttgggatgaagtgaggaaaag
ctaacaaaggagggacttgggaggagagattgaagacagggccattcctg
tttctctttccttgccttttaatgttctagaacacctgtcacctggtaat
gtgttttggtgacctgttgacatgtgtgcgcgcacgcttgtgtatattaa
gcgcaggtgcccaaaaaggcatcagagcctccaaaagctgaagttacaca
ctgatgtgagtggcctgcgagggggtgcggagatccttcttggggtcctc
tgcaagagcagtacttgctcttaactgctgagccacctctctagccccaa
ccaggtcagccggaatgattgagttgctctttccagtgactttgatcacc
cttttaagacccacttaaggacaacactccaaggtcttagggttagggac
ttcaccctaacaaaagtagaaaaaacaatttctcaatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_71121046_71122090
seq2: B6Ng01-216J17.b_40_1093 (reverse)

seq1  CTCCCCTCCATC--TCCCT--GTGTTTCTC-CACCCAAAGAGTGG-GCGG  44
      ||||||||| ||   | ||  ||||||||| |||||||||||||| | ||
seq2  CTCCCCTCCCTCCTGCACTGGGTGTTTCTCACACCCAAAGAGTGGAGAGG  50

seq1  TCATGTTTCTCTGGGA-CAATCTATAAACATCTAAGATACGG-ACTGAAC  92
      |||||||||||||||| |||||||||||| | |||||||||| |||||||
seq2  TCATGTTTCTCTGGGAGCAATCTATAAAC-TTTAAGATACGGAACTGAAC  99

seq1  AGTG-AGGTGTGTTTATCCTAATGGTGTGCATGCGTGCTTGCTTCGATAC  141
      |||| ||| ||||| |||||||  | | ||||||||| |  || ||||||
seq2  AGTGAAGGGGTGTTAATCCTAAATGCGAGCATGCGTGATGCCTCCGATAC  149

seq1  ATTCCATCTGTGCTTTGTTATTTTAATGGTTCTCAACACATGGGTTGCGA  191
      ||||||||||||||||| || |||||  ||||||||||||| || |||||
seq2  ATTCCATCTGTGCTTTG-TAATTTAACCGTTCTCAACACATTGGGTGCGA  198

seq1  CCTTTTGGCAAACTTCTATCC-ACCAAAATATTTTCA-TTATGATTTAGT  239
      || |||||||||||||||||| || |||||||||||| | ||||||||||
seq2  CCCTTTGGCAAACTTCTATCCAACTAAAATATTTTCAGTAATGATTTAGT  248

seq1  ACAATAGCAAAATCACAACTATGAAGTACCAACAAAAATAATTGTATGGT  289
       |||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCAATAGCAAAATCACAACTATGAAGTTCCAACAAAAATAATTGTATGGT  298

seq1  TGGGGTCACCATAATATGAAGAACTGAATTAAAGGGTTTGAACATTAAGG  339
       |||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CGGGGTCACCATAATATGAAGAATTGAATAAAAGGGTTTGAACATTAAGG  348

seq1  GTGTTGAAGAGCACTGTTTTAAAGAATAAATACTGTAAAGAAAATAGAAC  389
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTTGAAGAGCACTGTTTTAAAGACTAAATACTGTAAAGAAAATAGAAC  398

seq1  AGACAAGATGATCCTACACGGAGAAGAGACACAAATGAGAAAAGAGTAAG  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGATGATCCTACACGGAGAAGAGACACAAATGAGAAAAGAGTAAG  448

seq1  AAAAAGCTTAGCCTCAATCATGAAGAACTATATGTTGAGAAATACTGATT  489
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAAGCTTAGCCTCAATCATGAAGAACTATATGATGAGAAATACTGATT  498

seq1  ATCTCCATTTCTATATTTAATAACTCGCTGAGTTCTGCCAGAAAGTGTTG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCATTTCTATATTTAATAACTCGCTGAGTTCTGCCAGAAAGTGTTG  548

seq1  AACAAGCCCACTTAGTATTGTCAAAAACGTAAGGCACTTAGCTAATTAAA  589
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AACAAGCCCACTTAGTATTGTCAAAAACGTAAGGCACTTAGCAAATTAAA  598

seq1  TATTCTTTTCTTTTTGGGTTTGACATTTTCATCAACTAGAAACTTTTCAG  639
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTTTCTTTTTGGGTTTGACATTTTCATCAACTAGAAACTTTTCAG  648

seq1  GCTAGATTATTGAAATAAAAATTTGCCTGATTAAGCCTTTAAAAATGAAT  689
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATTATTGAAATAAAAATTTGCCTGATTAAGCCTTTAAAAATGAAT  698

seq1  GCTAATGCATTTCAACTGGAGAAGCAACCATAGGAATACAACATCACTTC  739
      | |||| |||||||  ||||||||||||||||||||||||||||||||||
seq2  GTTAATACATTTCACATGGAGAAGCAACCATAGGAATACAACATCACTTC  748

seq1  ATTTAAGGCACCAATTAACAATTGAGAGCTTCAAGAGTCACTTGTTTATT  789
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATTTAAGGCACCAATTAACAATTGAGAGCTTCAAGAGTCAATTGTTTATT  798

seq1  ATGCCTAAAATGAAATTTAAAAATGTAAGTGGAAAGGTTGTCACATAGAG  839
      ||||  ||||||||||||||||| ||||| |||||||||||| ||||| |
seq2  ATGCAAAAAATGAAATTTAAAAAAGTAAGCGGAAAGGTTGTCTCATAGTG  848

seq1  GGGACTCACAGGATTTATATGTGACACAAGGAATTTCACAAGATAAGTAC  889
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGACTCACAGGATTTATATGTGACACAAGGAATTTCTCAAGATAAGTAC  898

seq1  ATGGCCCTGTCTTAAAAGTTGAAGGACTTCCTATTTTCCTCTAATGCTCA  939
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGGCCCTGTCTTAAAAGTTGAAGGACTTCCTATTTTCCTATAATGCTCA  948

seq1  CACTTGTCTTAGTGAGATTGTGTCCCTAACAACTGAGACAACTTGGGCTC  989
      || |||||| |||||||||||||||||  || ||||||||  ||||||||
seq2  CAGTTGTCTCAGTGAGATTGTGTCCCTTTCACCTGAGACAGGTTGGGCTC  998

seq1  AAAAGAAGTGCAGGGGGCGGGGTGGGGGGGGGAATCCCAGGAAGGCCTAA  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTGCAGGGGGCGGGGTGGGGGGGGGAATCCCAGGAAGGCCTAA  1048

seq1  GAATTC  1045
      ||||||
seq2  GAATTC  1054

seq1: chr18_61753107_61753664
seq2: B6Ng01-216J17.g_393_958 (reverse)

seq1  GTGATTGAGAACTTG-TTTTTCTACTTTTGTTAGGGTGTAAGT-CCTAAC  48
      ||||||||||| ||| |||||||||||||||||||||| |||| ||||||
seq2  GTGATTGAGAAATTGTTTTTTCTACTTTTGTTAGGGTG-AAGTCCCTAAC  49

seq1  CCTAAGACCTTGGAGTG-TGTCCTT-AGTGGGTCTTAAAA-GGTGATCAA  95
      ||||||||||||||||| ||||||| |||||||||||||| |||||||||
seq2  CCTAAGACCTTGGAGTGTTGTCCTTAAGTGGGTCTTAAAAGGGTGATCAA  99

seq1  AGTCACTGGAAAGAGCAACTCAATCATTCCGGCTGACCTGGTT-GGGCTA  144
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTCACTGGAAAGAGCAACTCAATCATTCCGGCTGACCTGGTTGGGGCTA  149

seq1  GAGAGGTGGCTCAGCAGTTAAGAGCAAGTACTGCTCTTGCAGAGGA-CCC  193
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGAGGTGGCTCAGCAGTTAAGAGCAAGTACTGCTCTTGCAGAGGACCCC  199

seq1  AAG-AGGATCTCCGCA-CCCCTCGCAGGCCACTCACATCAGTGTGTAACT  241
      ||| |||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGAAGGATCTCCGCACCCCCTCGCAGGCCACTCACATCAGTGTGTAACT  249

seq1  TCAGCTTTTGGAGGCTCTGATGCCTTTTTGGGCACCTGCGCTTAATATAC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTGGAGGCTCTGATGCCTTTTTGGGCACCTGCGCTTAATATAC  299

seq1  ACACGCGTGCGCGCACACATGTCAACAGGTCACC-AAACACATTACCAGG  340
      ||| |||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACAAGCGTGCGCGCACACATGTCAACAGGTCACCAAAACACATTACCAGG  349

seq1  TGACAGGTGTTCTAGAACATTAAAAGGCAAGGAAAGAGAAACAGGAATGG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGTGTTCTAGAACATTAAAAGGCAAGGAAAGAGAAACAGGAATGG  399

seq1  CCCTGTCTTCAATCTCTCCTCCCAAGTCCCTCCTTTGTTAGCTTTTCCTC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTCAATCTCTCCTCCCAAGTCCCTCCTTTGTTAGCTTTTCCTC  449

seq1  ACTTCAACCCAACAAGTCGGAAATTAGTTGGAGGGACTGGAAATTAAACT  490
      |||||| ||||||||||||||||||||||||| || ||||||||| | | 
seq2  ACTTCATCCCAACAAGTCGGAAATTAGTTGGACGGGCTGGAAATTCAGCC  499

seq1  GGGGCTCCACATA---AAGGATATACTATTAGAAGCTCTGGAATAAAGTG  537
      ||  || |||| |   ||  ||||| |||   |||||||||    |||| 
seq2  GGACCTACACACACACAAACATATA-TAT--AAAGCTCTGG-TGGAAGTA  545

seq1  AAACCCAACATTTCCTTTCCC  558
      |     |||||||||||||||
seq2  ATTTAGAACATTTCCTTTCCC  566