BAC Information

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BAC

Clone NameB6Ng01-218H21
Chromosome18 (Build37)
Map Location 88,908,821 - 89,057,869
singlet/doubletdoublet
Overlap geneLOC100040003, LOC623208, Socs6
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
Downstream geneRttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218H21.bB6Ng01-218H21.g
ACCGA034606GA034607
length1,033778
definitionB6Ng01-218H21.b B6Ng01-218H21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,908,821 - 88,909,676)(89,057,097 - 89,057,869)
sequence
gaattctcctgcatggctcctctgtagttttggtcagtccatcagcattg
cagtgggtgtctacatgcttaaataaacatttcttctattgcagatattg
taaaaacttgtagttattttacccaaagaaataaaggggatgtacttgat
tttggaacagttcaaatagttggtgggttgctgcgacatagtgagagagt
tcaatccaaaagcaccatgtcacagtaactggagttccaaggtctgaaca
catcatagaattatgcatagtacttatatataaatatacaatgtaattat
atagtacatatatgtttgataaatatatacatttacacctactgtattag
ggctactattactgtgactaaacacattttctttcttattcatccccaag
atctcaactttaaaccataaataagtttaaaagtaccagactttacaagt
tctagcacattaaaatttcaatctctttaaaaatatctagccgggcgtgg
tggcgcacacctttaatcccagcactcgggaggcagaggcaggcggattt
ctgagttcgaggccagcctggtctacaaagtgagttccaggacagccagg
gctacacagagaaaccctgtcttgaaaaaaccaaaaaaaaataaaaaaat
aaaataaaaatatctaatccctctaaaaatccaaaatttcttttaaaagt
tcagtcttccttaaggcacctgcataaattaaacaataaaacacttcctt
caagagggaagaaccagagcacaactacaatctaagcaaagcaggacaga
actccagcagtataaataacttaatgtccaattatctgggattcactcag
gattttctaagctcctccaaggaacttgagtcacagagctctggcctctg
cagcacacacagcttgtcttctctgttcccactgcctgctgctactccat
tgctgctgctgttattggtggtcgtcccattgtaactgggcttcactttc
accaatagcctttttatagactcttcttcatga

gaattcttttttttccttcttgagttgctgaaacccacacttgaagaaac
ttcctgaaaagtgaggcggtggaacctctctggggcttttgtatcagaaa
atgttgctctgaatatttggtttacatctggttgagtatagaattttagg
tactatttactcaggagaaataagttatttggtattgatggatttggtat
tgatggattaaccctaaaatctcaactgtgttataaaggatgaaaattgg
ctttcgcttttctggtttttggagggatgggtctttctgacttccttagt
ctgctcttctgtaattgctgtcctacctcaaagtggaagtggagaggatg
gcaggtccagaatccagcatatcgttttgcaagaatgccagggaatgtgg
aagactcaaggagagccattgaactttttggggtgacagagttgggggtt
tgaaggcattgcccatcatcatatgaccttcactgttaagaacttgggcc
agctactactagtttacagcagttgtgtctttctagaatttttttgtagt
ttttgtaatatttgtttataatactaaagctttgtaatggcttgtatcat
cattattgtttttattcttaaaatatatttgtttcattgatttttaagct
taatgctcttcaattctaggaagactttaaaccttccgtttgtaatttct
tccccctcatttttttttgttttttacttctctgaggtttgtattttttt
tgtttccccctctgctacaggaaagtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88908821_88909676
seq2: B6Ng01-218H21.b_46_901

seq1  GAATTCTCCTGCATGGCTCCTCTGTAGTTTTGGTCAGTCCATCAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGCATGGCTCCTCTGTAGTTTTGGTCAGTCCATCAGCATTG  50

seq1  CAGTGGGTGTCTACATGCTTAAATAAACATTTCTTCTATTGCAGATATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGTGTCTACATGCTTAAATAAACATTTCTTCTATTGCAGATATTG  100

seq1  TAAAAACTTGTAGTTATTTTACCCAAAGAAATAAAGGGGATGTACTTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACTTGTAGTTATTTTACCCAAAGAAATAAAGGGGATGTACTTGAT  150

seq1  TTTGGAACAGTTCAAATAGTTGGTGGGTTGCTGCGACATAGTGAGAGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAACAGTTCAAATAGTTGGTGGGTTGCTGCGACATAGTGAGAGAGT  200

seq1  TCAATCCAAAAGCACCATGTCACAGTAACTGGAGTTCCAAGGTCTGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCAAAAGCACCATGTCACAGTAACTGGAGTTCCAAGGTCTGAACA  250

seq1  CATCATAGAATTATGCATAGTACTTATATATAAATATACAATGTAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAGAATTATGCATAGTACTTATATATAAATATACAATGTAATTAT  300

seq1  ATAGTACATATATGTTTGATAAATATATACATTTACACCTACTGTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTACATATATGTTTGATAAATATATACATTTACACCTACTGTATTAG  350

seq1  GGCTACTATTACTGTGACTAAACACATTTTCTTTCTTATTCATCCCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTATTACTGTGACTAAACACATTTTCTTTCTTATTCATCCCCAAG  400

seq1  ATCTCAACTTTAAACCATAAATAAGTTTAAAAGTACCAGACTTTACAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAACTTTAAACCATAAATAAGTTTAAAAGTACCAGACTTTACAAGT  450

seq1  TCTAGCACATTAAAATTTCAATCTCTTTAAAAATATCTAGCCGGGCGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCACATTAAAATTTCAATCTCTTTAAAAATATCTAGCCGGGCGTGG  500

seq1  TGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTT  550

seq1  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGG  600

seq1  GCTACACAGAGAAACCCTGTCTTGAAAAAACCAAAAAAAAATAAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACAGAGAAACCCTGTCTTGAAAAAACCAAAAAAAAATAAAAAAAT  650

seq1  AAAATAAAAATATCTAATCCCTCTAAAAATCCAAAATTTCTTTTAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAATATCTAATCCCTCTAAAAATCCAAAATTTCTTTTAAAAGT  700

seq1  TCAGTCTTCCTTAAGGCACCTGCATAAATTAAACAATAAAACACTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCTTCCTTAAGGCACCTGCATAAATTAAACAATAAAACACTTCCTT  750

seq1  CAAGAGGGAAGAACCAGAGCACAACTACAATCTAAGCAAAGCAGGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGGGAAGAACCAGAGCACAACTACAATCTAAGCAAAGCAGGACAGA  800

seq1  ACTCCAGCAGTATAAATAACTTAATGTCCAATTATCTGGGATTCACTCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGCAGTATAAATAACTTAATGTCCAATTATCTGGGATTCACTCAG  850

seq1  GATTTT  856
      ||||||
seq2  GATTTT  856


seq1: chr18_89057097_89057869
seq2: B6Ng01-218H21.g_64_841 (reverse)

seq1  GGAC-TTCCTGTAGCAGAGGGGGAAAAAAAAAAAAAACAAAACCTCAGAG  49
      |||| ||||||||||||||||||||| |||||||| || |||||||||||
seq2  GGACTTTCCTGTAGCAGAGGGGGAAACAAAAAAAATAC-AAACCTCAGAG  49

seq1  AAGTAAAA---ACAAAAAAATGAGGGGGAAGAAATTACAAACGGAAGGTT  96
      ||||||||   | |||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAACAAAAAAAAATGAGGGGGAAGAAATTACAAACGGAAGGTT  99

seq1  TAAAGTCTTCCTAGAATTGAAGAGCATTAAGCTTAAAAATCAATGAAAC-  145
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAGTCTTCCTAGAATTGAAGAGCATTAAGCTTAAAAATCAATGAAACA  149

seq1  AATATATTTTAAGAAT-AAAACAATAATGATGATACAAGCCATTACAAAG  194
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AATATATTTTAAGAATAAAAACAATAATGATGATACAAGCCATTACAAAG  199

seq1  CTTTAGTATTATAAACAAATATTACAAAAACTACAAAAAAATTCTAGAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTATTATAAACAAATATTACAAAAACTACAAAAAAATTCTAGAAA  249

seq1  GACACAACTGCTGTAAACTAGTAGTAGCTGGCCCAAGTTCTTAACAGTGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACAACTGCTGTAAACTAGTAGTAGCTGGCCCAAGTTCTTAACAGTGA  299

seq1  AGGTCATATGATGATGGGCAATGCCTTCAAACCCCCAACTCTGTCACCCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCATATGATGATGGGCAATGCCTTCAAACCCCCAACTCTGTCACCCC  349

seq1  AAAAAGTTCAATGGCTCTCCTTGAGTCTTCCACATTCCCTGGCATTCTTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTCAATGGCTCTCCTTGAGTCTTCCACATTCCCTGGCATTCTTG  399

seq1  CAAAACGATATGCTGGATTCTGGACCTGCCATCCTCTCCACTTCCACTTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACGATATGCTGGATTCTGGACCTGCCATCCTCTCCACTTCCACTTT  449

seq1  GAGGTAGGACAGCAATTACAGAAGAGCAGACTAAGGAAGTCAGAAAGACC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGACAGCAATTACAGAAGAGCAGACTAAGGAAGTCAGAAAGACC  499

seq1  CATCCCTCCAAAAACCAGAAAAGCGAAAGCCAATTTTCATCCTTTATAAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTCCAAAAACCAGAAAAGCGAAAGCCAATTTTCATCCTTTATAAC  549

seq1  ACAGTTGAGATTTTAGGGTTAATCCATCAATACCAAATCCATCAATACCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTGAGATTTTAGGGTTAATCCATCAATACCAAATCCATCAATACCA  599

seq1  AATAACTTATTTCTCCTGAGTAAATAGTACCTAAAATTCTATACTCAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTATTTCTCCTGAGTAAATAGTACCTAAAATTCTATACTCAACC  649

seq1  AGATGTAAACCAAATATTCAGAGCAACATTTTCTGATACAAAAGCCCCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAAACCAAATATTCAGAGCAACATTTTCTGATACAAAAGCCCCAG  699

seq1  AGAGGTTCCACCGCCTCACTTTTCAGGAAGTTTCTTCAAGTGTGGGTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTCCACCGCCTCACTTTTCAGGAAGTTTCTTCAAGTGTGGGTTTC  749

seq1  AGCAACTCAAGAAGGAAAAAAAAGAATTC  773
      |||||||||||||||||||||||||||||
seq2  AGCAACTCAAGAAGGAAAAAAAAGAATTC  778


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