BAC Information

Click to search

BAC

Clone NameB6Ng01-220L07
Chromosome18 (Build37)
Map Location 41,458,329 - 41,459,447
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L07.bB6Ng01-220L07.g
ACCGA036197GA036198
length1,1931,109
definitionB6Ng01-220L07.b B6Ng01-220L07.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctggaagcaatcccacttaa
atcaggggctagacgatgctgcccactttctccctacctcttcaacatag
tacttgaagttctagtcagagcaattcgacaacaaaaggagatcaagggg
atacaatttggaaaagatgaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaccagagaactcctaaact
tgataaacagcttcagtgaagtagctggatatataactaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatttaaaatatcttggct
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaagtct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggactggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattagaaagggcaatctgcaaattcatctggaataacaaaaaacc
taggatagaaaaaaatcttctcaaggataaaagaacctctggtgggatca
ccatgcctgacccaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagtgacagacaagtagaccaatggaatagaattgaaga
cccacaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaaatggtgctgg
caaaactagtggttatcatgtagaagaattgcgagtcgatccattcctat
ctccttgtactaggcaaaactagtggatcagactcacataaaactagaga
cactgaaactatagaggagaagtggggaaagtcaagatatgggcacaggg
caaattctgatagaacagccaatgcctgtgcttaaatcagattgacaatg
gctccagcctaccagatttctcaaccgtgaagagatatactga

gaattccagagcagagctataaaacttgtctagactaaaaggatatgaca
attgaattcaatgcatgatggggaaccaaaagctgatcctgaatcagcag
ccaaaccgccatggggtcactgttgggacaatagaaaggatagaatactg
tttattatagagtaaaagatatctctgtgtaaatttctgatataaatatc
tggtgataatgtttttccttattcttagcaaacatatttgtaacactggg
tatatttattaaggaaaagtgggcattcattttaagttaaaatggcttaa
aatatttatttctcttttctcctctttcttctctctgtcttctttctcca
tttcaatatttcatatattaaaatagggtcctataaaattcatgtactat
atggaaagcttaatcttccctatacccacatttggctactccccatgaag
acttttggggaatacctgttcatgagtttgctgccttcatgacttagtta
atattgagataaaaagggtgttggggcaggtatgccactatctgctcctt
tcttttaaaggtattattttatttttcctttaccctctgttttctgccac
atgttacatttaaattctctaaaaactattctatctgaagcatttggaac
ataaacaaagttaccttctatctgtctatttaccctgctcccaaagagat
aaagaaaaatagatagctaatctggtatatactgattggatgcaggcaaa
gtttatatgtacacattttttttctgctactgtagattttctataaagat
taagttatttcaaaatacacactttaacaatttttctcgcaatcctcagt
ttcttacatctctttccagtactttattcactatattccaacaactttcg
acccctcactaggacaatcttagactcacttggttctgtgcttgtgaaaa
cacaaaaatttcttcctcctccatttcccattttatccaaattcacaata
ttctgtgtttatctgagccacattttcctctaagaccagacatgtcagct
gtttgtttctgtcttttttttttttttcaaacaatctagcattcctcatg
cagacattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41458329_41459447
seq2: B6Ng01-220L07.g_67_1175 (reverse)

seq1  AAATGTCCTGCAATGAGG-ATGCTAGATGGTTTGGAAAAAAAAAAAAAAA  49
      |||||| |||| |||||| ||||||||| |||||  ||||||||||||||
seq2  AAATGT-CTGC-ATGAGGAATGCTAGATTGTTTG--AAAAAAAAAAAAAA  46

seq1  GAACAGAAAACAAAACAAGCTGACCATGTTCTTGGTCTTAGAGG-AAATG  98
      | |||| |||||||   |||||| |||||   |||||||||||| |||||
seq2  G-ACAG-AAACAAA--CAGCTGA-CATGT--CTGGTCTTAGAGGAAAATG  89

seq1  TGGCTTCAGATAAACACAGAATTATGTGAATTTGGATAAAAATGGGAATT  148
      |||| |||||||||||||||||  ||||||||||||| |||||||||| |
seq2  TGGC-TCAGATAAACACAGAATATTGTGAATTTGGAT-AAAATGGGAAAT  137

seq1  GGAGGAGGAAGAAATTTTTGTGTTTTCACAAGCACAGAACCAAGTGAGTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGAAGAAATTTTTGTGTTTTCACAAGCACAGAACCAAGTGAGTC  187

seq1  TAAGATTGTCCTAGTGAGGGGTCGAAAGTTGTTGGAATATAGTGAATAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTGTCCTAGTGAGGGGTCGAAAGTTGTTGGAATATAGTGAATAAA  237

seq1  GTACTGGAAAGAGATGTAAGAAACTGAGGATTGCGAGAAAAATTGTTAAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGGAAAGAGATGTAAGAAACTGAGGATTGCGAGAAAAATTGTTAAA  287

seq1  GTGTGTATTTTGAAATAACTTAATCTTTATAGAAAATCTACAGTAGCAG-  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGTGTATTTTGAAATAACTTAATCTTTATAGAAAATCTACAGTAGCAGA  337

seq1  AAAAAAATGTGTACATATAAACTTTGCCTGCATCCAATCAGTATATACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTGTACATATAAACTTTGCCTGCATCCAATCAGTATATACCA  387

seq1  GATTAGCTATCTATTTTTCTTTATCTCTTTGGGAGCAGGGTAAATAGACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGCTATCTATTTTTCTTTATCTCTTTGGGAGCAGGGTAAATAGACA  437

seq1  GATAGAAGGTAACTTTGTTTATGTTCCAAATGCTTCAGATAGAATAGTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGGTAACTTTGTTTATGTTCCAAATGCTTCAGATAGAATAGTTT  487

seq1  TTAGAGAATTTAAATGTAACATGTGGCAGAAAACAGAGGGTAAAGGAAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAATTTAAATGTAACATGTGGCAGAAAACAGAGGGTAAAGGAAAA  537

seq1  ATAAAATAATACCTTTAAAAGAAAGGAGCAGATAGTGGCATACCTGCCCC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAATACCTTTAAAAGAAAGGAGCAGATAGTGGCATACCTGCCCC  587

seq1  AACACCCTTTTTATCTCAATATTAACTAAGTCATGAAGGCAGCAAACTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCCTTTTTATCTCAATATTAACTAAGTCATGAAGGCAGCAAACTCA  637

seq1  TGAACAGGTATTCCCCAAAAGTCTTCATGGGGAGTAGCCAAATGTGGGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGTATTCCCCAAAAGTCTTCATGGGGAGTAGCCAAATGTGGGTA  687

seq1  TAGGGAAGATTAAGCTTTCCATATAGTACATGAATTTTATAGGACCCTAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAAGATTAAGCTTTCCATATAGTACATGAATTTTATAGGACCCTAT  737

seq1  TTTAATATATGAAATATTGAAATGGAGAAAGAAGACAGAGAGAAGAAAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATATGAAATATTGAAATGGAGAAAGAAGACAGAGAGAAGAAAGA  787

seq1  GGAGAAAAGAGAAATAAATATTTTAAGCCATTTTAACTTAAAATGAATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGAGAAATAAATATTTTAAGCCATTTTAACTTAAAATGAATGC  837

seq1  CCACTTTTCCTTAATAAATATACCCAGTGTTACAAATATGTTTGCTAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTTCCTTAATAAATATACCCAGTGTTACAAATATGTTTGCTAAGA  887

seq1  ATAAGGAAAAACATTATCACCAGATATTTATATCAGAAATTTACACAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAAAAACATTATCACCAGATATTTATATCAGAAATTTACACAGAG  937

seq1  ATATCTTTTACTCTATAATAAACAGTATTCTATCCTTTCTATTGTCCCAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTACTCTATAATAAACAGTATTCTATCCTTTCTATTGTCCCAA  987

seq1  CAGTGACCCCATGGCGGTTTGGCTGCTGATTCAGGATCAGCTTTTGGTTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACCCCATGGCGGTTTGGCTGCTGATTCAGGATCAGCTTTTGGTTC  1037

seq1  CCCATCATGCATTGAATTCAATTGTCATATCCTTTTAGTCTAGACAAGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCATGCATTGAATTCAATTGTCATATCCTTTTAGTCTAGACAAGTT  1087

seq1  TTATAGCTCTGCTCTGGAATTC  1119
      ||||||||||||||||||||||
seq2  TTATAGCTCTGCTCTGGAATTC  1109


| Home | SequenceCutter | Blast | Download |