BAC Information

Click to search

BAC

Clone NameB6Ng01-222N11
Chromosome18 (Build37)
Map Location 89,176,999 - 89,178,177
singlet/doubletsinglet
Overlap geneRttn
Upstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
Downstream geneCd226, Dok6, LOC383320
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222N11.bB6Ng01-222N11.g
ACCGA037748GA037749
length1,1661,215
definitionB6Ng01-222N11.b B6Ng01-222N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaacataacatttccaatcatttcagaaaacttacagaaggcaga
cctattctattgttttacattaaaatatattttataatcaaagtcaatga
atctaaaactagaactaattctaattattatagttccctggtaagattct
acatattaattaaaaaataaaatgtagtttagtcaaagttaaagaaaatc
attcaacaggcttaatagtatgactgaaatattgtctttatttctgaaag
taatgacttatttcattgacatcctattttaacaataatcatcaactgcc
tgaaagtctaatattaagatataaatcagttaagcaataatgcccttaaa
agagttgccagtaaagatcaaaaaagataaagaaatcaaattttaagtta
aaaccactgaaaaactaagacatgtaaaagagcagctattagaaagtcat
gagaccctcactgttagtaattttcttattgaaaaagaaagagggattag
aaatgtaaatgagctaaatacctaataaaaaatggaaaaaaaaagaaaaa
gaaagaggaaaaactatatatctgctcacctacaaatcattcaacaaata
ttaactgaacctcccctctgcagctctgtgtgccaggcactataccagat
cctgaggacacagcagaaagcaaaacaaaatctctgcttcattggaagct
gacattccactaaagaaggaagaaagtaaatactacattcacaagatgtc
agatgtggctagaagtactaataaaaaaataaatcaggataagaaagata
aagaaacattatatggcatggataacggaagtgctactactttaaaacaa
taaagtatctctgtaaggtgacatcagagtttcctagtttacattctatt
gctgtgataaacaccatgatgaaatctaatttaggaaggaatgggtttgt
ttggcttaccagttatattcatcaccaaagaaaacccagacaggaactca
aggccagaaacctgaaagcaggactgaagcagaaaccaacagaatctact
aatagctcgatttctgcgcttgctcagtttcattcctttacacttcagac
acttgccaaggatggcatgtcacttactaggctctcccacattatctgtt
ccagaaatgccacctc

gaattctctgtttagctctgtacccattttttaaattgggatagaggaat
agatggcaggaaataattaaactcaagacagaaatcaaccaattagaaac
aaagagaatgatacaaaaaaaaatcaacaaaatgaaaagctagttctttg
agaaaatgaacaatatagataaacccttactaaactatatagccaaacta
actaaaggacacagagaccttatccaaattaacaaatcagaaatgagaag
ggaggcacaacaacagaaactgaggaaatttaagagtcatcagatcttac
tacaaaagctttactcaacaaaactggaaaatctagatgaaatggatgac
tttttagacagatatcacatacctaagttaaatcaagagaagataaacta
aacagtcccatggctcctaaggaaatagaagacgccactcaaaacctccc
aaacaaaaaaagcccagagccagatggatttagtgcaaaatcctaccaga
acttcaaagaagacctaataccaacactcctcaagctatttcataaaatt
gaaacagaaggaacactacctaattcattctatgaagttacagttactct
gatacctaaaccacacaaagacccaacaaagaaagagaacttcagaccat
ttcacttataaatattgattcaaaaacactcaattctagcaaactgaatc
caaaaaatacatcaaaaccatctttcaccacaatcaattaggcttcaccc
agggatgcagggatagtttgatatatgaaaatccattaatgtaacccact
atataaacatactcaaaagaaaaaaatcatatgatcatctcattagatgc
tgaaaaagaatttgacaaaattcaacatccttttatgctaaagtattgga
gagatcagggaattcaaggcccttacctaatataataaaagtaatttaca
gcaaaccaacagccactatcaaatcaatgaagatacttgaagcaatccca
ctaaattcaggacaggacaggctgcccactcctcctctgtatctatcaat
atagtgcttgaagttatagatagagcatagacaacaaaggagatcaggag
gatacagtgccaaggaagaaggtcagtatcaatatttgcaaggtataggt
tatagcataacatagcggttcccgaaaattatccctaaagaaaaccttct
ctatctacagacttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89176999_89178177
seq2: B6Ng01-222N11.b_47_1212 (reverse)

seq1  GAGGTGGCATTTTCTTG-ACAGATAATTGTGTGGGAGAGCCTAGTAAGTG  49
      ||||||||| ||||| | ||||||||   |||||||||||||||||||||
seq2  GAGGTGGCA-TTTCTGGAACAGATAA---TGTGGGAGAGCCTAGTAAGTG  46

seq1  GACCATGCTATCTTTGGGCAGGTGGTCCTGAGGTGTAAAGGAATGAAACT  99
         ||||| ||| || |||| |||   |||| ||||||||||||||||||
seq2  --ACATGCCATCCTT-GGCAAGTG--TCTGAAGTGTAAAGGAATGAAACT  91

seq1  GAGCAAGGCGCAGAAATCGAGCTATTAAGTAAGATTTCTTGTTGGTTTCT  149
      |||||| ||||||||||||||||||| ||| |||||   |||||||||||
seq2  GAGCAA-GCGCAGAAATCGAGCTATT-AGT-AGATT--CTGTTGGTTTCT  136

seq1  GCTTCAGTTCCTGCCTTCAGG-TTCTTGCCTTGAGTTCCTGTCTGGGTTT  198
      ||||||| |||||| |||||| |||| |||||||||||||||||||||||
seq2  GCTTCAG-TCCTGCTTTCAGGTTTCTGGCCTTGAGTTCCTGTCTGGGTTT  185

seq1  TCTTTGGTGATGAATATAACTGGTAAGCCAAACAAACCCATTCCTTCCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGGTGATGAATATAACTGGTAAGCCAAACAAACCCATTCCTTCCTA  235

seq1  AATTAGATTTCATCATGGTGTTTATCACAGCAATAGAATGTAAACTAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGATTTCATCATGGTGTTTATCACAGCAATAGAATGTAAACTAGGA  285

seq1  AACTCTGATGTCACCTTACAGAGATACTTTATTGTTTTAAAGTAGTAGCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGATGTCACCTTACAGAGATACTTTATTGTTTTAAAGTAGTAGCA  335

seq1  CTTCCGTTATCCATGCCATATAATGTTTCTTTATCTTTCTTATCCTGATT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGTTATCCATGCCATATAATGTTTCTTTATCTTTCTTATCCTGATT  385

seq1  TATTTTTTTATTAGTACTTCTAGCCACATCTGACATCTTGTGAATGTAGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTATTAGTACTTCTAGCCACATCTGACATCTTGTGAATGTAGT  435

seq1  ATTTACTTTCTTCCTTCTTTAGTGGAATGTCAGCTTCCAATGAAGCAGAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTTCTTCCTTCTTTAGTGGAATGTCAGCTTCCAATGAAGCAGAG  485

seq1  ATTTTGTTTTGCTTTCTGCTGTGTCCTCAGGATCTGGTATAGTGCCTGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTGCTTTCTGCTGTGTCCTCAGGATCTGGTATAGTGCCTGGC  535

seq1  ACACAGAGCTGCAGAGGGGAGGTTCAGTTAATATTTGTTGAATGATTTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGCTGCAGAGGGGAGGTTCAGTTAATATTTGTTGAATGATTTGT  585

seq1  AGGTGAGCAGATATATAGTTTTTCCTCTTTCTTTTTCTTTTTTTTTCCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGCAGATATATAGTTTTTCCTCTTTCTTTTTCTTTTTTTTTCCAT  635

seq1  TTTTTATTAGGTATTTAGCTCATTTACATTTCTAATCCCTCTTTCTTTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAGGTATTTAGCTCATTTACATTTCTAATCCCTCTTTCTTTTT  685

seq1  CAATAAGAAAATTACTAACAGTGAGGGTCTCATGACTTTCTAATAGCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAAAATTACTAACAGTGAGGGTCTCATGACTTTCTAATAGCTGC  735

seq1  TCTTTTACATGTCTTAGTTTTTCAGTGGTTTTAACTTAAAATTTGATTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACATGTCTTAGTTTTTCAGTGGTTTTAACTTAAAATTTGATTTC  785

seq1  TTTATCTTTTTTGATCTTTACTGGCAACTCTTTTAAGGGCATTATTGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTTTTTGATCTTTACTGGCAACTCTTTTAAGGGCATTATTGCTT  835

seq1  AACTGATTTATATCTTAATATTAGACTTTCAGGCAGTTGATGATTATTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTTATATCTTAATATTAGACTTTCAGGCAGTTGATGATTATTGT  885

seq1  TAAAATAGGATGTCAATGAAATAAGTCATTACTTTCAGAAATAAAGACAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGGATGTCAATGAAATAAGTCATTACTTTCAGAAATAAAGACAA  935

seq1  TATTTCAGTCATACTATTAAGCCTGTTGAATGATTTTCTTTAACTTTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCAGTCATACTATTAAGCCTGTTGAATGATTTTCTTTAACTTTGAC  985

seq1  TAAACTACATTTTATTTTTTAATTAATATGTAGAATCTTACCAGGGAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTACATTTTATTTTTTAATTAATATGTAGAATCTTACCAGGGAACT  1035

seq1  ATAATAATTAGAATTAGTTCTAGTTTTAGATTCATTGACTTTGATTATAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAATTAGAATTAGTTCTAGTTTTAGATTCATTGACTTTGATTATAA  1085

seq1  AATATATTTTAATGTAAAACAATAGAATAGGTCTGCCTTCTGTAAGTTTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTAATGTAAAACAATAGAATAGGTCTGCCTTCTGTAAGTTTT  1135

seq1  CTGAAATGATTGGAAATGTTATGTTGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  CTGAAATGATTGGAAATGTTATGTTGAATTC  1166


| Home | SequenceCutter | Blast | Download |