BAC Information

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BAC

Clone NameB6Ng01-223K23
Chromosome18 (Build37)
Map Location 68,909,911 - 69,072,159
singlet/doubletdoublet
Overlap genenone
Upstream geneSeh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223K23.bB6Ng01-223K23.g
ACCGA038353GA038354
length4931,081
definitionB6Ng01-223K23.b B6Ng01-223K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,909,911 - 68,910,409)(69,071,092 - 69,072,159)
sequence
agttctcctctcatcctggctcagcaaccatttgatggtggctctgcttc
ttgcaactttcccctcctgtctgttttaaaagtttcttgatattccaggt
gctgcctcattctttagctttctttttctcatagtactcagtgaggcggt
gcttgtcccagatagatgttcagtgttataaattgacctagcctagaatg
cgagacaagaaaacgatcacattcccttcccgttgtctcttgcagaactg
cgatgtggaatagctgaatgtctagtggatcttctgggagcatcacacca
gtctttttatcagacaaaccaggaaacctttaaatcttcagtttgtttta
tttcttaacgataacacaaatgtaggaagggggaggggagatagagatgg
ggagaacactcccatagggattattatgtacctactagttcctacccaat
gcagataatttgtttacctaaattagacattttcttcctatga

gaattcaacctcacttatattctccggctgttaaaagaatgtgggctgtt
gagataatgcgggtagaatctttgccagagagtaacatgaatggccacta
gtcgacctctcggtacagacctggttccctctctgaaaaccgatgggtgg
agacttcactatcccagattctattatcatccttacctcccacatcccca
ccattgatgtctgcttacagcccttagggcttctgaatcttcaataccca
gtctcttctactttcttctttctggttgcaaagcccatgaaccacacagg
caggctgataagaagacagtatgagattgtggctctaatcttctcagttt
gttacttttcttcttgatgtgatcaaataaccattaaaaaaatgaaatgt
atagggggaggttttgtctgatgtgttaagagaggatatggttctttacg
gcaggaagatctgctatcaggagtggaaggtccttcctgtgtaaagtctc
ttcatgtccacaaacacaagccagggagacacaaaggctggtgctcatat
gaatttgtcctcctccctcttttaactcggtgtgggaatatagcccatgt
gatgcttccacccacgatcagggctcttatctcagtgaaacctctgagga
taaatttagtcacattggcaatgacagtgagttttctaacctgcttagaa
cccttcttatgttagaacctctgtgtgtgacattgttctctgctcagttt
tctggggttcattccccatctctcctgatatttttctttcgaggactaat
atttttctacttccacctaaaccatcatctctgctactttgagccctcta
caggggggattaacgagaactagatactcaatctatccataagctaatag
agtccttgtaatgataggtagtgcagatcatcacattcctggctggcatt
tataggcaggcctattctggacaaaggaattttgtgaaatgaacactgga
ccatgcatgcagattccactcctcctgttactttcctctggaaaggacct
atgttcaagaagatccaaataagaattctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_68909911_68910409
seq2: B6Ng01-223K23.b_45_543

seq1  GAATTCAGTTCTCCTCTCATCCTGGCTCAGCAACCATTTGATGGTGGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCCTCTCATCCTGGCTCAGCAACCATTTGATGGTGGCTC  50

seq1  TGCTTCTTGCAACTTTCCCCTCCTGTCTGTTTTAAAAGTTTCTTGATATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCTTGCAACTTTCCCCTCCTGTCTGTTTTAAAAGTTTCTTGATATT  100

seq1  CCAGGTGCTGCCTCATTCTTTAGCTTTCTTTTTCTCATAGTACTCAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTGCTGCCTCATTCTTTAGCTTTCTTTTTCTCATAGTACTCAGTGA  150

seq1  GGCGGTGCTTGTCCCAGATAGATGTTCAGTGTTATAAATTGACCTAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGTGCTTGTCCCAGATAGATGTTCAGTGTTATAAATTGACCTAGCCT  200

seq1  AGAATGCGAGACAAGAAAACGATCACATTCCCTTCCCGTTGTCTCTTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCGAGACAAGAAAACGATCACATTCCCTTCCCGTTGTCTCTTGCA  250

seq1  GAACTGCGATGTGGAATAGCTGAATGTCTAGTGGATCTTCTGGGAGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGCGATGTGGAATAGCTGAATGTCTAGTGGATCTTCTGGGAGCATC  300

seq1  ACACCAGTCTTTTTATCAGACAAACCAGGAAACCTTTAAATCTTCAGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGTCTTTTTATCAGACAAACCAGGAAACCTTTAAATCTTCAGTTT  350

seq1  GTTTTATTTCTTAACGATAACACAAATGTAGGAAGGGGGAGGGGAGATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTCTTAACGATAACACAAATGTAGGAAGGGGGAGGGGAGATAG  400

seq1  AGATGGGGAGAACACTCCAATAGGGATTATTATGTACCTACAAGTTCCTA  450
      |||||||||||||||||| |||||||||||||||||||||| ||||||||
seq2  AGATGGGGAGAACACTCCCATAGGGATTATTATGTACCTACTAGTTCCTA  450

seq1  CCCAATGCAGATAATTTGTTTACCTAAATTAGACATTTTCTTCCTATGA  499
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATGCAGATAATTTGTTTACCTAAATTAGACATTTTCTTCCTATGA  499


seq1: chr18_69071092_69072159
seq2: B6Ng01-223K23.g_69_1149 (reverse)

seq1  AGAGA--TCTTATTT-GAACTTCCTG-ACATAGGTC--TTTCAGAGG-AA  43
      |||||  |||||||| || |||| || |||||||||  || |||||| ||
seq2  AGAGAATTCTTATTTGGATCTTCTTGAACATAGGTCCTTTCCAGAGGAAA  50

seq1  GTAACAGGAGGAGT-GAATCTGCATGCATGGT-CAGTGTTCATTTCAC-A  90
      |||||||||||||| ||||||||||||||||| ||||||||||||||| |
seq2  GTAACAGGAGGAGTGGAATCTGCATGCATGGTCCAGTGTTCATTTCACAA  100

seq1  AATTCCTTTGTCCAG-ATAGGCCTGCCTATAAATGCCAGCCAGGAATGTG  139
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AATTCCTTTGTCCAGAATAGGCCTGCCTATAAATGCCAGCCAGGAATGTG  150

seq1  ATGATCTGCACTACCTATCATTACAAGGACTCTATTAGCTTATGGATAGA  189
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGCACTACCTATCATTACAAGGACTCTATTAGCTTATGGATAGA  200

seq1  TTGAGTATCTAGTTCTCGTTAAT-CCCCCTGTAGAGGGCTCAAAGTAGCA  238
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGAGTATCTAGTTCTCGTTAATCCCCCCTGTAGAGGGCTCAAAGTAGCA  250

seq1  GAGATGATGGTTTAGGTGGAAGTAG-AAAATATTAGTCCTCGAAAGAAAA  287
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAGATGATGGTTTAGGTGGAAGTAGAAAAATATTAGTCCTCGAAAGAAAA  300

seq1  ATATCAGGAGAGATGGGGAATGAACCCCAGAAAACTGAGCAGAGAACAAT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGGAGAGATGGGGAATGAACCCCAGAAAACTGAGCAGAGAACAAT  350

seq1  GTCACACACAGAGGTTCTAACATAAGAAGGGTTCTAAGCAGGTTAGAAAA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACACAGAGGTTCTAACATAAGAAGGGTTCTAAGCAGGTTAGAAAA  400

seq1  CTCACTGTCATTGCCAATGTGACTAAATTTATCCTCAGAGGTTTCACTGA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGTCATTGCCAATGTGACTAAATTTATCCTCAGAGGTTTCACTGA  450

seq1  GATAAGAGCCCTGATCGTGGGTGGAAGCATCACATGGGCTATATTCCCAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGAGCCCTGATCGTGGGTGGAAGCATCACATGGGCTATATTCCCAC  500

seq1  ACCGAGTTAAAAGAGGGAGGAGGACAAATTCATATGAGCACCAGCCTTTG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTTAAAAGAGGGAGGAGGACAAATTCATATGAGCACCAGCCTTTG  550

seq1  TGTCTCCCTGGCTTGTGTTTGTGGACATGAAGAGACTTTACACAGGAAGG  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCTGGCTTGTGTTTGTGGACATGAAGAGACTTTACACAGGAAGG  600

seq1  ACCTTCCACTCCTGATAGCAGATCTTCCTGCCGTAAAGAACCATATCCTC  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCACTCCTGATAGCAGATCTTCCTGCCGTAAAGAACCATATCCTC  650

seq1  TCTTAACACATCAGACAAAACCTCCCCCTATACATTTCATTTTTTTAATG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACACATCAGACAAAACCTCCCCCTATACATTTCATTTTTTTAATG  700

seq1  GTTATTTGATCACATCAAGAAGAAAAGTAACAAACTGAGAAGATTAGAGC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGATCACATCAAGAAGAAAAGTAACAAACTGAGAAGATTAGAGC  750

seq1  CACAATCTCATACTGTCTTCTTATCAGCCTGCCTGTGTGGTTCATGGGCT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATCTCATACTGTCTTCTTATCAGCCTGCCTGTGTGGTTCATGGGCT  800

seq1  TTGCAACCAGAAAGAAGAAAGTAGAAGAGACTGGGTATTGAAGATTCAGA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAACCAGAAAGAAGAAAGTAGAAGAGACTGGGTATTGAAGATTCAGA  850

seq1  AGCCCTAAGGGCTGTAAGCAGACATCAATGGTGGGGATGTGGGAGGTAAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAAGGGCTGTAAGCAGACATCAATGGTGGGGATGTGGGAGGTAAG  900

seq1  GATGATAATAGAATCTGGGATAGTGAAGTCTCCACCCATCGGTTTTCAGA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAATAGAATCTGGGATAGTGAAGTCTCCACCCATCGGTTTTCAGA  950

seq1  GAGGGAACCAGGTCTGTACCGAGAGGTCGACTAGTGGCCATTCATGTTAC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGAACCAGGTCTGTACCGAGAGGTCGACTAGTGGCCATTCATGTTAC  1000

seq1  TCTCTGGCAAAGATTCTACCCGCATTATCTCAACAGCCCACATTCTTTTA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCAAAGATTCTACCCGCATTATCTCAACAGCCCACATTCTTTTA  1050

seq1  ACAGCCGGAGAATATAAGTGAGGTTGAATTC  1068
      |||||||||||||||||||||||||||||||
seq2  ACAGCCGGAGAATATAAGTGAGGTTGAATTC  1081


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