BAC Information

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BAC

Clone NameB6Ng01-223M09
Chromosome18 (Build37)
Map Location 86,350,785 - 86,506,303
singlet/doubletdoublet
Overlap geneLOC665402
Upstream geneLOC665382, LOC545269, LOC545270
Downstream geneNeto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223M09.bB6Ng01-223M09.g
ACCGA038421GA038422
length8621,130
definitionB6Ng01-223M09.b B6Ng01-223M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,350,785 - 86,351,644)(86,505,170 - 86,506,303)
sequence
gaattcattacctgcttcctgattgcttatacaactcagccagcctttgc
aagctcttacgacctacagttccttttcatgaaagactacaaccttgaac
tgtgaagtaggcatcttatacttctactacagaaaatgttccatggatct
tttctctattatgttgcttttgtcaggatatttgatcacaagaacaggaa
aaaaagtctctctctccccgtctccctctccgtccccctacccctctcct
ttccctcccccctccctctaccttctcctccccctccctctctctctcac
ccacacacaatttcaaatggaaaactttgactgtattatctcaggtactg
tttacaatgtgtaagagaagcaccagcttttactggagtgatagcaggct
gttatggagccagtcaatttttgactataatagtggctcagaacagaaaa
aacaattggattagcatgtgttacttgatcatttatgagagtgttggaga
gaagctagctgtttataggtccggtgtttaagtagctagaactgacttta
tggccatttgtgtctgaagcagtgagtgtagaagaatgaagaagtggcct
agacaggcaagaagtgagaacctttaaacactgaatatgaacctggagta
gatggttggtacaattgcatattgtctattacattaaggaaaaaaattat
aaggaagtttgtagtgaccatgaatgtctagaatttgtatagaatcgtgt
tgtgaatgatacaaagcaagtaaatgttgtttctagcagaaccatagaaa
gaagaggaggaaggaaggaaggaaggaaggaaggaaaggaaggaaaggaa
ggaaggaaggaa

gaattctaatgctattaaaatcatggtcacaatatacttcaatatgttat
ataatttcagtgtttgcatatccatgggagtcagttatattcctgtgaaa
accataggttacaattttgatctaatatatggctgtagaaggacagaagt
ttcaaagtatgaagcttatctataatgactttcattttacagtagagaat
aaatatgttttgtgtaactaatttatagtgagcaaatatagcaagaaata
caaaggatataaattatatatacacaaaatctatatcacagttatgtaaa
tagatacttctcatgaaattttatgtgattctttgataaagttatatata
cttatggatgtaaatatactctgggtttaagtttctaggcaacaaagcca
aacagagatattttatgattcagttgtgggcatgagaagtgcaatgagcc
atttaatgtgaaaatgttctatcctgactttaactctgaaatggagggac
cagatggcactgtacttcactcaggttgtgatcaggatgagaagaggaga
tacacagacatgactggcagagaggagaggcaccgccttccaaaagttgg
cttcccgggacaacatcagtaaaagtcaatgaggctgcttaactatccta
aatcttcactgctccttaatggaacaatttaccctgtgttgaaatttgcc
actggacaatttggtgtgatcagttttgcccgatgccatttaagaagtga
ttagtatgacaagttattgcattcatctaggatcacataattaagtccga
aacacagtgcagattctcatccctttctaaagacatcttggattttaaaa
agcagaaagtcaaatttcattcagtaatacccccatctcacctttccccc
aaaaagggaaaaccagattcttttgctataaatacatacatacagacatt
cacacccataaaataaaccattaacatagactgaagatacacctgtgtat
tagaaggtggaattattaggtaatattaatctaaactacacctccgttca
ctggagaatttcagtgtagttattattaaatgagaaaatggggaagcatt
taatgccctgacacctatgttttgttacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86350785_86351644
seq2: B6Ng01-223M09.b_50_911

seq1  GAATTCATTACCTGCTTCCTGATTGCTTATACAACTCAGCCAGCCTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTGCTTCCTGATTGCTTATACAACTCAGCCAGCCTTTGC  50

seq1  AAGCTCTTACGACCTACAGTTCCTTTTCATGAAAGACTACAACCTTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTTACGACCTACAGTTCCTTTTCATGAAAGACTACAACCTTGAAC  100

seq1  TGTGAAGTAGGCATCTTATACTTCTACTACAGAAAATGTTCCATGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAGTAGGCATCTTATACTTCTACTACAGAAAATGTTCCATGGATCT  150

seq1  TTTCTCTATTATGTTGCTTTTGTCAGGATATTTGATCACAAGAACAGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTATTATGTTGCTTTTGTCAGGATATTTGATCACAAGAACAGGAA  200

seq1  AAAAAGTCTCTCTCTCCCCGTCTCCCTCTCCGTCCCCCTACCCCTCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTCTCTCTCTCCCCGTCTCCCTCTCCGTCCCCCTACCCCTCTCCT  250

seq1  TTCCCTCCCCCCTCCCTCTACCTTCTCCTCCCCCTCCCTCTCTCTCTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCCCCTCCCTCTACCTTCTCCTCCCCCTCCCTCTCTCTCTCAC  300

seq1  CCACACACAATTTCAAATGGAAAACTTTGACTGTATTATCTCAGGTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACACAATTTCAAATGGAAAACTTTGACTGTATTATCTCAGGTACTG  350

seq1  TTTACAATGTGTAAGAGAAGCACCAGCTTTTACTGGAGTGATAGCAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATGTGTAAGAGAAGCACCAGCTTTTACTGGAGTGATAGCAGGCT  400

seq1  GTTATGGAGCCAGTCAATTTTTGACTATAATAGTGGCTCAGAACAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAGCCAGTCAATTTTTGACTATAATAGTGGCTCAGAACAGAAAA  450

seq1  AACAATTGGATTAGCATGTGTTACTTGATCATTTATGAGAGTGTTGGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATTGGATTAGCATGTGTTACTTGATCATTTATGAGAGTGTTGGAGA  500

seq1  GAAGCTAGCTGTTTATAGGTCCGGTGTTTAAGTAGCTAGAACTGACTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGCTGTTTATAGGTCCGGTGTTTAAGTAGCTAGAACTGACTTTA  550

seq1  TGGCCATTTGTGTCTGAAGCAGTGAGTGTAGAAGAATGAAGAAGTGGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATTTGTGTCTGAAGCAGTGAGTGTAGAAGAATGAAGAAGTGGCCT  600

seq1  AGACAGGCAAGAAGTGAGAACCTTTAAACACTGAATATGAACCTGGAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAAGAAGTGAGAACCTTTAAACACTGAATATGAACCTGGAGTA  650

seq1  GATGGTTGGTACAATTGCATATTGTCTATTACATTAAGGAAAAAAATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGGTACAATTGCATATTGTCTATTACATTAAGGAAAAAAATTAT  700

seq1  AAGGAAGTTTGTAGTGACCATGAATGTCTAGAATTTGTATAGAATCGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGTTTGTAGTGACCATGAATGTCTAGAATTTGTATAGAATCGTGT  750

seq1  TGTGAATGATACAAAGCAAGTAAATGTTGTTTCTAGCAGAACCATAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGATACAAAGCAAGTAAATGTTGTTTCTAGCAGAACCATAGAAA  800

seq1  GAAGAGGAGGAAGGAAGGAAGGAAGGAAGGAAGG-AAGGAAGG-AAGGAA  848
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  GAAGAGGAGGAAGGAAGGAAGGAAGGAAGGAAGGAAAGGAAGGAAAGGAA  850

seq1  GGAAGGAAGGAA  860
      ||||||||||||
seq2  GGAAGGAAGGAA  862


seq1: chr18_86505170_86506303
seq2: B6Ng01-223M09.g_67_1196 (reverse)

seq1  TTGT-ACAAAACATAGTTTGTCA-GGCATTTAATGCTTCCCCATTTTCTC  48
      |||| |||||||||||  ||||| |||||| |||||||||||||||||||
seq2  TTGTAACAAAACATAG-GTGTCAGGGCATTAAATGCTTCCCCATTTTCTC  49

seq1  ATTTTAATAATAACCTACACTGAAAATTCTCAGGTGAACG--AGTGTAGT  96
      | ||||||||||| |||||||| ||||||||  |||||||   |||||| 
seq2  A-TTTAATAATAA-CTACACTG-AAATTCTCCAGTGAACGGAGGTGTAG-  95

seq1  TTTAGATT-ATATACCCTAATAATCCACCCTTCTAATTACACAGGTGTAT  145
      |||||||| ||||  ||||||||| |  |||||||| |||||||||||||
seq2  TTTAGATTAATATTACCTAATAATTCCACCTTCTAA-TACACAGGTGTAT  144

seq1  CCTCAGTTCTATGTTAATGGTTTATTTTATGGGTGTGAATGTCTGTATGT  195
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAG-TCTATGTTAATGGTTTATTTTATGGGTGTGAATGTCTGTATGT  193

seq1  ATGTATTTATAGCAAAAGAATCTGGTTTTCCCTTTTTGGGGGGAAAGGTG  245
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTATTTATAGCAAAAGAATCTGGTTTTCCCTTTTT-GGGGGAAAGGTG  242

seq1  AGATGGGGGTATTACCTGAATGAAATTTGACTTTCTGCTTTTTAAAATCC  295
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGATGGGGGTATTA-CTGAATGAAATTTGACTTTCTGCTTTTTAAAATCC  291

seq1  AAGATGTCTTTAGAAAGGGATGAGAATCTGCACTGTGTTTCGGACTTAAT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGTCTTTAGAAAGGGATGAGAATCTGCACTGTGTTTCGGACTTAAT  341

seq1  TATGTGATCCTAGATGAATGCAATAACTTGTCATACTAATCACTTCTTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATCCTAGATGAATGCAATAACTTGTCATACTAATCACTTCTTAA  391

seq1  ATGGCATCGGGCAAAACTGATCACACCAAATTGTCCAGTGGCAAATTTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATCGGGCAAAACTGATCACACCAAATTGTCCAGTGGCAAATTTCA  441

seq1  ACACAGGGTAAATTGTTCCATTAAGGAGCAGTGAAGATTTAGGATAGTTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGTAAATTGTTCCATTAAGGAGCAGTGAAGATTTAGGATAGTTA  491

seq1  AGCAGCCTCATTGACTTTTACTGATGTTGTCCCGGGAAGCCAACTTTTGG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCTCATTGACTTTTACTGATGTTGTCCCGGGAAGCCAACTTTTGG  541

seq1  AAGGCGGTGCCTCTCCTCTCTGCCAGTCATGTCTGTGTATCTCCTCTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCGGTGCCTCTCCTCTCTGCCAGTCATGTCTGTGTATCTCCTCTTCT  591

seq1  CATCCTGATCACAACCTGAGTGAAGTACAGTGCCATCTGGTCCCTCCATT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGATCACAACCTGAGTGAAGTACAGTGCCATCTGGTCCCTCCATT  641

seq1  TCAGAGTTAAAGTCAGGATAGAACATTTTCACATTAAATGGCTCATTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTTAAAGTCAGGATAGAACATTTTCACATTAAATGGCTCATTGCA  691

seq1  CTTCTCATGCCCACAACTGAATCATAAAATATCTCTGTTTGGCTTTGTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCATGCCCACAACTGAATCATAAAATATCTCTGTTTGGCTTTGTTG  741

seq1  CCTAGAAACTTAAACCCAGAGTATATTTACATCCATAAGTATATATAACT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAACTTAAACCCAGAGTATATTTACATCCATAAGTATATATAACT  791

seq1  TTATCAAAGAATCACATAAAATTTCATGAGAAGTATCTATTTACATAACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAAAGAATCACATAAAATTTCATGAGAAGTATCTATTTACATAACT  841

seq1  GTGATATAGATTTTGTGTATATATAATTTATATCCTTTGTATTTCTTGCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATAGATTTTGTGTATATATAATTTATATCCTTTGTATTTCTTGCT  891

seq1  ATATTTGCTCACTATAAATTAGTTACACAAAACATATTTATTCTCTACTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGCTCACTATAAATTAGTTACACAAAACATATTTATTCTCTACTG  941

seq1  TAAAATGAAAGTCATTATAGATAAGCTTCATACTTTGAAACTTCTGTCCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGAAAGTCATTATAGATAAGCTTCATACTTTGAAACTTCTGTCCT  991

seq1  TCTACAGCCATATATTAGATCAAAATTGTAACCTATGGTTTTCACAGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGCCATATATTAGATCAAAATTGTAACCTATGGTTTTCACAGGAA  1041

seq1  TATAACTGACTCCCATGGATATGCAAACACTGAAATTATATAACATATTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGACTCCCATGGATATGCAAACACTGAAATTATATAACATATTG  1091

seq1  AAGTATATTGTGACCATGATTTTAATAGCATTAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  AAGTATATTGTGACCATGATTTTAATAGCATTAGAATTC  1130


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