BAC Information

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BAC

Clone NameB6Ng01-223N15
Chromosome18 (Build37)
Map Location 54,051,267 - 54,052,349
singlet/doubletsinglet
Overlap geneCsnk1g3
Upstream geneSncaip, LOC667317, LOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100
Downstream geneEG433184, LOC667360, EG545257, LOC100042489, Zfp608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223N15.bB6Ng01-223N15.g
ACCGA038481GA038482
length1,0971,168
definitionB6Ng01-223N15.b B6Ng01-223N15.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctatattacaagtttatgaatagtttcttgaatgttctgaactga
atgaggtaaaataggacgtgccttagtttcttagtgatcgttgttgtcat
atgcacttgacttgtctcccttgcctgccatgaatgatctgctagtcagt
ttccattgcttcctttttatctatcacaaagtccagtgttaagaatggac
tcattttcagctgttaaaaaagcctgctcattttctaggctctattttca
gctaagtcactgcttcctacttgactactgattcccagtttcaggcatgg
gccttgttctgggtcctccatcctgctccatcttcattctaggcttcttc
tgggatggaaggcagggagaccctcttaaactgaccgatacactttgact
ttctgtttctgatgtggaaatgtgtgctcttggaagacttcctatgtacc
tgttacacagacagaccagtctccaggtatttctgtacacaaatatgcat
ccacaggctttaccaaaaagaagcacactcaggaaccagagtggttgtcg
cctctgggaagggcagatgctgaggagtgagaagtgtatgaacagctgtg
gaacattcttacctcatttgtggatccttacatttagaatatggttttgg
ttagtccacaaatttcaagtaagtgaaaagctacatattgaaaatacaaa
aatttaccaaaagaaaatagaaaaaagcagaggaggaagtttttaaatgt
ttaaaaatattgctatgttcattaatttatttaaaacagctgcactttaa
agtaagctttttgcaaaaatatggaggatatgtaatactttgagatatac
taaattattacgagggtgatcattgtttttaatgttttttattttaaaga
ttttatttatgtatatgagtatactacactgtagctgtacagatggttgt
gagcccaccatattgtttctgagaatttgaacctcaggacctttggaaga
acagttcaggttgctcttaaaccactggagccgtctctcagccctttaat
gttttttttaaaaatttataatatattcttatgtacacacaatgtgc
gaattcaatagtttcgtacaacgaaaggggggggggcttcatacggttaa
agggaaacaaaccagtgacgaagagagacagcatggacacattcccatcc
ccagggccctcaaagaaaacaaaatatccaggaataaacctaaccaagaa
gatgaaaagcttctacaatgaaaacatcaaacctctaactaaagggataa
agacactagaaaatgcaaaggcatcgtgtgttcaccagttggtagaacta
gtatgaaaatggccatgccaccaaaagtcattacagattgaatgcaattc
caatcaaaatcccatttccattcttcacataaatggggtgggggtggaat
aaccatataggaccacaatcgacttcaaatagccaagacaatcctgagca
aaaaatacaatggtggattaccattccaaacctcaagatatattacagac
ctatagtaatgaaaataatatggtactggcctagaaacagatgtgtagat
caatggaacaaaactgaagacatgaagatatgaatcatgagttcgtatca
tttcagccaggtaacatttgaaaacatacactggagaaaagaaagcatgt
tcaacaaatggcactagggaatacaggtgtccaaacaaagaatgaagtca
gactcctattaccttacacaaaaactaaatctaagtggattaaggaccta
aatatgagacctgaagcactgaagctactagagatgcacatagaagtgcc
ctacacgatgtaaggacaggaaaagacttgttgagtaggactccattcat
ccaagaatcaagaccaacaattgacaatttatcaaactaaaaagtttatg
tacagctaaagaaacagaaatgaaccctgtgaagaggaagccccacggag
tgagagagacccttggcccagccaaacatctgacaaagcattttatatcc
agatatataaagaagttaaaaacaagaggccaaaaaaaaaatcaaagaca
catcaaaaataggctatggctctaagaagagacaacagagagttctgagt
ggaggaaatcaaaatggctaaggaatattctcaaataatactcatttcct
agaaactagataatggcggatccaagtacggtggaattccatctttacgc
ccaatccaggaaatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54051267_54052349
seq2: B6Ng01-223N15.b_46_1142

seq1  GAATTCTATATTACAAGTTTATGAATAGTTTCTTGAATGTTCTGAACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATATTACAAGTTTATGAATAGTTTCTTGAATGTTCTGAACTGA  50

seq1  ATGAGGTAAAATAGGACGTGCCTTAGTTTCTTAGTGATCGTTGTTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAAAATAGGACGTGCCTTAGTTTCTTAGTGATCGTTGTTGTCAT  100

seq1  ATGCACTTGACTTGTCTCCCTTGCCTGCCATGAATGATCTGCTAGTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACTTGACTTGTCTCCCTTGCCTGCCATGAATGATCTGCTAGTCAGT  150

seq1  TTCCATTGCTTCCTTTTTATCTATCACAAAGTCCAGTGTTAAGAATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATTGCTTCCTTTTTATCTATCACAAAGTCCAGTGTTAAGAATGGAC  200

seq1  TCATTTTCAGCTGTTAAAAAAGCCTGCTCATTTTCTAGGCTCTATTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAGCTGTTAAAAAAGCCTGCTCATTTTCTAGGCTCTATTTTCA  250

seq1  GCTAAGTCACTGCTTCCTACTTGACTACTGATTCCCAGTTTCAGGCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGTCACTGCTTCCTACTTGACTACTGATTCCCAGTTTCAGGCATGG  300

seq1  GCCTTGTTCTGGGTCCTCCATCCTGCTCCATCTTCATTCTAGGCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTTCTGGGTCCTCCATCCTGCTCCATCTTCATTCTAGGCTTCTTC  350

seq1  TGGGATGGAAGGCAGGGAGACCCTCTTAAACTGACCGATACACTTTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGGAAGGCAGGGAGACCCTCTTAAACTGACCGATACACTTTGACT  400

seq1  TTCTGTTTCTGATGTGGAAATGTGTGCTCTTGGAAGACTTCCTATGTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTCTGATGTGGAAATGTGTGCTCTTGGAAGACTTCCTATGTACC  450

seq1  TGTTACACAGACAGACCAGTCTCCAGGTATTTCTGTACACAAATATGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACACAGACAGACCAGTCTCCAGGTATTTCTGTACACAAATATGCAT  500

seq1  CCACAGGCTTTACCAAAAAGAAGCACACTCAGGAACCAGAGTGGTTGTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGGCTTTACCAAAAAGAAGCACACTCAGGAACCAGAGTGGTTGTCG  550

seq1  CCTCTGGGAAGGGCAGATGCTGAGGAGTGAGAAGTGTATGAACAGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGGAAGGGCAGATGCTGAGGAGTGAGAAGTGTATGAACAGCTGTG  600

seq1  GAACATTCTTACCTCATTTGTGGATCCTTACATTTAGAATATGGTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCTTACCTCATTTGTGGATCCTTACATTTAGAATATGGTTTTGG  650

seq1  TTAGTCCACAAATTTCAAGTAAGTGAAAAGCTACATATTGAAAATACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCACAAATTTCAAGTAAGTGAAAAGCTACATATTGAAAATACAAA  700

seq1  AATTTACCAAAAGAAAATAGAAAAAAGCAGAGGAGGAAGTTTTTAAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTACCAAAAGAAAATAGAAAAAAGCAGAGGAGGAAGTTTTTAAATGT  750

seq1  TTAAAAATATTGCTATGTTCATTAA-TTATTTAAAACAGCTGCACTTTAA  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTAAAAATATTGCTATGTTCATTAATTTATTTAAAACAGCTGCACTTTAA  800

seq1  AGTAAGCTTTTTGCAAAAATATGGAGGATATGTAATACTTTGAGATATAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGCTTTTTGCAAAAATATGGAGGATATGTAATACTTTGAGATATAC  850

seq1  TAAATTATTACGAGGGTGATCATTGTTTTTAATGTTTTTTATTTTAAAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTACGAGGGTGATCATTGTTTTTAATGTTTTTTATTTTAAAGA  900

seq1  TTTTATTTATGTATATGAGTATACTACACTGTAGCTGTACAGATGGTTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATGTATATGAGTATACTACACTGTAGCTGTACAGATGGTTGT  950

seq1  GAG-CCACCATATTGTTTCTGAG-ATTTGAA-CTCAGGACCTTT-GAAGA  995
      ||| ||||||||||||||||||| ||||||| |||||||||||| |||||
seq2  GAGCCCACCATATTGTTTCTGAGAATTTGAACCTCAGGACCTTTGGAAGA  1000

seq1  ACAG-TCAG--TGCTCTT-AACCACT-GAGCCGTCTCTCCAGCCC-TTAA  1039
      |||| ||||  ||||||| ||||||| ||||||||||| |||||| ||||
seq2  ACAGTTCAGGTTGCTCTTAAACCACTGGAGCCGTCTCT-CAGCCCTTTAA  1049

seq1  TGTTTTTTT--AAAAATTAT-ATATATTCTTATGTACACAC-ATGTGC  1083
      |||||||||  |||| |||| |||||||||||||||||||| ||||||
seq2  TGTTTTTTTTAAAAATTTATAATATATTCTTATGTACACACAATGTGC  1097