BAC Information

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BAC

Clone NameB6Ng01-224J23
Chromosome18 (Build37)
Map Location 55,660,521 - 55,775,168
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224J23.bB6Ng01-224J23.g
ACCGA039026GA039027
length1,125795
definitionB6Ng01-224J23.b B6Ng01-224J23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,774,034 - 55,775,168)(55,660,521 - 55,661,099)
sequence
gaattcatttaaattattcaaaataaaagcctgactgtttgcttttactt
tcattaaaagataatatgacaccaaagatcagtagtgatggagaggccga
gtttggtgtggcaggctctccaatctaatttacaagtgtttcaggcagtt
atcttttgatgaacaagacggtattacaccatggggggacatgctaatta
gatgtgcaatgtggaaagaaagcatgcttctttaaacaaattatgagagt
caaccctagctctaggaaatagcaacctttaaaggatcatgctagtgatt
tcccatgaacattattcagtaggatggacattaggtagtgtaggattagc
ctgatgagaacaagatgctctggctttaactcctccccttctcctcttct
ctcctgtaagtcctctgtcacctcgacagagacagtctctctcccagtat
tgaaatgatcataggcggtaattctcaaatttactgcattatagatagat
tttgagtataagaatagaatagaatgaaagagagggatggaaaggtttaa
taagagtgacaactgaatgtcgtgaaacaaggacccattttttttctcta
taatgtgcatcgttcttcacaagaatgaacagtggcaagtagcccatata
caatcccatccccctctaactcaaatacacacttaacctgtatgagtttt
ctgtgcatactgtccccttctcattccgtatcagacccagtacaattgtg
tactgtcttttttttttttttttttttggttttttcagacagggtttctc
ctgtgtagccctggctgtcccggaactcacttttgtagaccaggctgggc
ctccgaactcagaaatcccacctgcctctgcctccagagtggctggggat
ttaaaggcatgtgccaccacaacctggccgaattgtgtacatgtcatctg
aagcgttttctattacacattgtgcttctctatctaaccaaccctaagtg
ttgttttaaagtgacaatgatgccacatagcactgcagctgcagagccat
gtataagcgccatgtgaatttatgtgccagcctttgtctatgggaccacg
tattcatgcaaatagactggctgca
gaattcaatggttttcattttggatacttggatacatttaaactccacat
gtaaccagttttataaaaggagtattagttggttgtaggcttagattttc
caaaactactttgtttaaggttcttcaaggcttcaacctcccttctagtc
caccaaccaaacttagggaagaaaggaggttaatatgaaagggcagttgt
gaacctgtttagtagtatttggggtgtgtgtgtatgtgatttcactcttc
attgccaggctagcagcagtccagttaaatagaaaacaccaaacacagat
cagtagaggcaggatccagaaacaacaaggctctgccaaaactttgagtc
accagagtcggccagaatcagccggaataccatgttctttgatgtgtatc
tctctacagaatgaagaccagagaagaccagcaaagaccaaccagtgaag
aagcaaagcatcgcatgctatagcaatgcaagagcatctttgcactgttt
gtggcattctgtttatattctctctaaccatcatgcaccctcaagtgtgt
ttttcagcaaaacatcaaatgccctctcataaagacagcttccagaaaaa
catcatgtgacacaactgagtttgttaagaaaccagaaattcaaaaggga
cctatcatgactgtcctctgaagacccagcaagcagctgaaagaatcaga
tgccgatgttttgcacccaaccaatgggacagaaagagctgacccctgtt
gttgaattagggaaggtttgaaagaagctggagaagggcgattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_55774034_55775168
seq2: B6Ng01-224J23.b_47_1171 (reverse)

seq1  TGCAGACCCCAGTCTAATTTTGGTATGAAATACGTGGT-CCATAGGACCA  49
      |||||   ||||||||   || | ||| |||||||||| ||||||   ||
seq2  TGCAG---CCAGTCTA---TTTGCATG-AATACGTGGTCCCATAG--ACA  41

seq1  AAGGCT-GCACATAAA-TCACATGCGCTGTAATACATGGCTCTTGCAGCT  97
      |||||| ||||||||| ||||||| ||  | ||||||||||| |||||||
seq2  AAGGCTGGCACATAAATTCACATG-GCGCTTATACATGGCTC-TGCAGCT  89

seq1  GCAGTGCTATGT-GCATCATTTGTCACTTTTAAAACAAACACTTTAGGGG  146
      |||||||||||| |||||| ||||||| |||||||| |||||||   |||
seq2  GCAGTGCTATGTGGCATCA-TTGTCAC-TTTAAAAC-AACACTT--AGGG  134

seq1  TTGGTTTAGATAAGAGAAAGCACAATGGTTGTAATAG-AAACGC-TCAGA  194
      |||| |||||| |||| ||||||||||  |||||||| |||||| |||||
seq2  TTGG-TTAGAT-AGAG-AAGCACAATG--TGTAATAGAAAACGCTTCAGA  179

seq1  TGACA-GTACACAATTCGGCCAGG-TGTGGTGGCACATGCCTTTAA--TC  240
      ||||| |||||||||||||||||| |||||||||||||||||||||   |
seq2  TGACATGTACACAATTCGGCCAGGTTGTGGTGGCACATGCCTTTAAATCC  229

seq1  CCAG-CACTCTGGAGGCAGAGGCAGGT-GGATTTCTGAGTTC-GAGG-CC  286
      |||| |||||||||||||||||||||| |||||||||||||| |||| ||
seq2  CCAGCCACTCTGGAGGCAGAGGCAGGTGGGATTTCTGAGTTCGGAGGCCC  279

seq1  AGCCTGGTCTAC-AAAGTGAGTTCCGGGACAGCCAGGGCTACACA-GAGA  334
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  AGCCTGGTCTACAAAAGTGAGTTCCGGGACAGCCAGGGCTACACAGGAGA  329

seq1  AACCCTGTCTTGAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAGACAGT  384
      ||||||||| ||||||||||    ||||||||||||||||||||||||||
seq2  AACCCTGTC-TGAAAAAACC----AAAAAAAAAAAAAAAAAAAAGACAGT  374

seq1  ACACAATTGTACTGGGTCTGATACGGAATGAGAAGGGGACAGTATGCACA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATTGTACTGGGTCTGATACGGAATGAGAAGGGGACAGTATGCACA  424

seq1  GAAAACTCATACAGGTTAAGTGTGTATTTGAGTTAGAGGGGGATGGGATT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTCATACAGGTTAAGTGTGTATTTGAGTTAGAGGGGGATGGGATT  474

seq1  GTATATGGGCTACTTGCCACTGTTCATTCTTGTGAAGAACGATGCACATT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATGGGCTACTTGCCACTGTTCATTCTTGTGAAGAACGATGCACATT  524

seq1  ATAGAGAAAAAAAATGGGTCCTTGTTTCACGACATTCAGTTGTCACTCTT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAAAAAAAATGGGTCCTTGTTTCACGACATTCAGTTGTCACTCTT  574

seq1  ATTAAACCTTTCCATCCCTCTCTTTCATTCTATTCTATTCTTATACTCAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACCTTTCCATCCCTCTCTTTCATTCTATTCTATTCTTATACTCAA  624

seq1  AATCTATCTATAATGCAGTAAATTTGAGAATTACCGCCTATGATCATTTC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATCTATAATGCAGTAAATTTGAGAATTACCGCCTATGATCATTTC  674

seq1  AATACTGGGAGAGAGACTGTCTCTGTCGAGGTGACAGAGGACTTACAGGA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGGAGAGAGACTGTCTCTGTCGAGGTGACAGAGGACTTACAGGA  724

seq1  GAGAAGAGGAGAAGGGGAGGAGTTAAAGCCAGAGCATCTTGTTCTCATCA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGGAGAAGGGGAGGAGTTAAAGCCAGAGCATCTTGTTCTCATCA  774

seq1  GGCTAATCCTACACTACCTAATGTCCATCCTACTGAATAATGTTCATGGG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATCCTACACTACCTAATGTCCATCCTACTGAATAATGTTCATGGG  824

seq1  AAATCACTAGCATGATCCTTTAAAGGTTGCTATTTCCTAGAGCTAGGGTT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACTAGCATGATCCTTTAAAGGTTGCTATTTCCTAGAGCTAGGGTT  874

seq1  GACTCTCATAATTTGTTTAAAGAAGCATGCTTTCTTTCCACATTGCACAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCATAATTTGTTTAAAGAAGCATGCTTTCTTTCCACATTGCACAT  924

seq1  CTAATTAGCATGTCCCCCCATGGTGTAATACCGTCTTGTTCATCAAAAGA  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAGCATGTCCCCCCATGGTGTAATACCGTCTTGTTCATCAAAAGA  974

seq1  TAACTGCCTGAAACACTTGTAAATTAGATTGGAGAGCCTGCCACACCAAA  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGCCTGAAACACTTGTAAATTAGATTGGAGAGCCTGCCACACCAAA  1024

seq1  CTCGGCCTCTCCATCACTACTGATCTTTGGTGTCATATTATCTTTTAATG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCCTCTCCATCACTACTGATCTTTGGTGTCATATTATCTTTTAATG  1074

seq1  AAAGTAAAAGCAAACAGTCAGGCTTTTATTTTGAATAATTTAAATGAATT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAAAGCAAACAGTCAGGCTTTTATTTTGAATAATTTAAATGAATT  1124

seq1  C  1135
      |
seq2  C  1125

seq1: chr18_55660521_55661099
seq2: B6Ng01-224J23.g_68_648

seq1  GAATTCAATGGTTTTCATTTTGGATACTTGGATACATTTAAACTCCACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGTTTTCATTTTGGATACTTGGATACATTTAAACTCCACAT  50

seq1  GTAACCAGTTTTATAAAAGGAGTATTAGTTGGTTGTAGGCTTAGATTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAGTTTTATAAAAGGAGTATTAGTTGGTTGTAGGCTTAGATTTTC  100

seq1  CAAAACTACTTTGTTTAAGGTTCTTCAAGGCTTCAACCTCCCTTCTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTACTTTGTTTAAGGTTCTTCAAGGCTTCAACCTCCCTTCTAGTC  150

seq1  CACCAACCAAACTTAGGGAAGAAAGGAGGTTAATATGAAAGGGCAGTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAACCAAACTTAGGGAAGAAAGGAGGTTAATATGAAAGGGCAGTTGT  200

seq1  GAACCTGTTTAGTAGTATTTGGGGTGTGTGTGTATGTGATTTCACTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTTTAGTAGTATTTGGGGTGTGTGTGTATGTGATTTCACTCTTC  250

seq1  ATTGCCAGGCTAGCAGCAGTCCAGTTAAATAGAAAACACCAAACACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCAGGCTAGCAGCAGTCCAGTTAAATAGAAAACACCAAACACAGAT  300

seq1  CAGTAGAGGCAGGATCCAGAAACAACAAGGCTCTGCCAAAACTTTGAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAGGCAGGATCCAGAAACAACAAGGCTCTGCCAAAACTTTGAGTC  350

seq1  ACCAGAGTCGGCCAGAATCAGCCGGAATACCATGTTCTTTGATGTGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGTCGGCCAGAATCAGCCGGAATACCATGTTCTTTGATGTGTATC  400

seq1  TCTCTACAGAATGAAGACCAGAGAAGACCAGCAAAGACCAACCAGTGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACAGAATGAAGACCAGAGAAGACCAGCAAAGACCAACCAGTGAAG  450

seq1  AAGCAAAGCATCGCATGCTATAGCAATGCAAGAGCATCTTTGCACTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGCATCGCATGCTATAGCAATGCAAGAGCATCTTTGCACTGTTT  500

seq1  GTGGCATTCTGTTTATATTCTCTCTAACCATCATGCACCCTCAAGTGTG-  549
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGGCATTCTGTTTATATTCTCTCTAACCATCATGCACCCTCAAGTGTGT  550

seq1  TTTTCAGCAAAACATC-AATGCCCTCTCATA  579
      |||||||||||||||| ||||||||||||||
seq2  TTTTCAGCAAAACATCAAATGCCCTCTCATA  581