BAC Information

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BAC

Clone NameB6Ng01-227C19
Chromosome18 (Build37)5 (Build37)
Map Location 61,687,054 - 61,687,57087,070,501 - 87,071,021
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik
Downstream geneCsnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227C19.bB6Ng01-227C19.g
ACCGA040912GA040913
length679699
definitionB6Ng01-227C19.b B6Ng01-227C19.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,687,054 - 61,687,570)(87,070,501 - 87,071,021)
sequence
gaattcaaatttgcacgtaatttggtgtggcagatgaaacaaataaagga
ttaaacattagagccaggagaggccctaggtcctgtgaaggttctatgcc
ccagtataggggaatgacaggactgggaacggaagtgggtgggttgggga
gaaggtagagggttttccagttaattttcagttgcttcacagttataaaa
atgtcacttgagctgacaggctggctcaatgggttaaaaaacatttgtcc
ccaggcctgacaactctcatgctttccccttggaaggtttggtatttgaa
ttttctgaaatcgccagtatatgaacgggagaagagcaccacaggtcata
attctaacctgatttggaggcccggggctgggaaactgtctgactttgac
agatacatagagataggcctggaaagaaagcagcatgagccactatgaat
acaccgaatggggaaccccaggaggcctgtctgttcaggtaccagccctg
tctgcacaatatttattcctccagcaatgggtcaagattcctttatctct
tctgcacaaaacttgttttatacacacacacacacacacacacacacacg
tatatacacacacacatatatatacacatatatatgtatgtatgtgtata
aatatgtatatatatatatatttgtttga
gaattcttgcatagaaagaagacactaaatatattggtttcaataagtga
attaatactgatatatgacaattcaagttcaaactatttctttagttttt
tttttttaaataaaatctctctaacaaaacaagacaaacatcatcatcat
caacaacaggaagaaaaacaagacaacaacaacaacaacaaaccaaaaac
ttttgcaaaaagcatacaaaaccccatgaagtctgtttttctttttcttt
attagatattttcttcatttacatttcaaatgctatcctctttcctagtt
tcctctctgaaaatcccctatgcccccccctcttctccctgctcaccaac
ccacccactcctgcttcttggccctggcattcccctatattggggcatag
aaccatgaagtctgtttttcactggccaattactcctagatcaaggagag
tgagcaagaacagaaagagagagagagaaagaaaaagggggatggtgagg
gaaggagtggagagagagaaggtgatctgggggcagtgcctgcaattccc
taagtcttactctcaggcattagagtaccaacctcacaggctgctgctgt
gggattaaaaagataatggccctgaaggtcccagtttaggctccttgcat
atcaagcaaatccaagtggtttgctattcttgtgattaccctttaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61687054_61687570
seq2: B6Ng01-227C19.b_206_722 (reverse)

seq1  TCAAACAAATATATATATATATACATATTTATACACATACATACATATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAAATATATATATATATACATATTTATACACATACATACATATAT  50

seq1  ATGTGTATATATATGTGTGTGTGTATATACGTGTGTGTGTGTGTGTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTATATATATGTGTGTGTGTATATACGTGTGTGTGTGTGTGTGTGT  100

seq1  GTGTGTGTATAAAACAAGTTTTGTGCAGAAGAGATAAAGGAATCTTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTATAAAACAAGTTTTGTGCAGAAGAGATAAAGGAATCTTGACC  150

seq1  CATTGCTGGAGGAATAAATATTGTGCAGACAGGGCTGGTACCTGAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGGAGGAATAAATATTGTGCAGACAGGGCTGGTACCTGAACAGA  200

seq1  CAGGCCTCCTGGGGTTCCCCATTCGGTGTATTCATAGTGGCTCATGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCCTGGGGTTCCCCATTCGGTGTATTCATAGTGGCTCATGCTGC  250

seq1  TTTCTTTCCAGGCCTATCTCTATGTATCTGTCAAAGTCAGACAGTTTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCCAGGCCTATCTCTATGTATCTGTCAAAGTCAGACAGTTTCCC  300

seq1  AGCCCCGGGCCTCCAAATCAGGTTAGAATTATGACCTGTGGTGCTCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCGGGCCTCCAAATCAGGTTAGAATTATGACCTGTGGTGCTCTTCT  350

seq1  CCCGTTCATATACTGGCGATTTCAGAAAATTCAAATACCAAACCTTCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTCATATACTGGCGATTTCAGAAAATTCAAATACCAAACCTTCCAA  400

seq1  GGGGAAAGCATGAGAGTTGTCAGGCCTGGGGACAAATGTTTTTTAACCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAGCATGAGAGTTGTCAGGCCTGGGGACAAATGTTTTTTAACCCA  450

seq1  CTGAGCCAGCCTGTCAGCTCAAGTGACATTTTTATAACTGTGAAGCAACT  500
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCCAGCCTGTCAGCTCAAGTGACATTTTTATAACTGTGAAGCAACT  500

seq1  GAAAATTAACTGGAAAA  517
      |||||||||||||||||
seq2  GAAAATTAACTGGAAAA  517

seq1: chr5_87070501_87071021
seq2: B6Ng01-227C19.g_67_587 (reverse)

seq1  CTTCTCTCTCTCCACTCCTTCCCTCACCATCCCCCTTTTTCTTTCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCTCTCCACTCCTTCCCTCACCATCCCCCTTTTTCTTTCTCTCT  50

seq1  CTCTCTTTCTGTTCTTGCTCACTCTCCTTGATCTAGGAGTAATTGGCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTTCTGTTCTTGCTCACTCTCCTTGATCTAGGAGTAATTGGCCAG  100

seq1  TGAAAAACAGACTTCATGGTTCTATGCCCCAATATAGGGGAATGCCAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACAGACTTCATGGTTCTATGCCCCAATATAGGGGAATGCCAGGG  150

seq1  CCAAGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGAGAAGAGGGGGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAGCAGGAGTGGGTGGGTTGGTGAGCAGGGAGAAGAGGGGGGGGC  200

seq1  ATAGGGGATTTTCAGAGAGGAAACTAGGAAAGAGGATAGCATTTGAAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGGATTTTCAGAGAGGAAACTAGGAAAGAGGATAGCATTTGAAATG  250

seq1  TAAATGAAGAAAATATCTAATAAAGAAAAAGAAAAACAGACTTCATGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGAAAATATCTAATAAAGAAAAAGAAAAACAGACTTCATGGGG  300

seq1  TTTTGTATGCTTTTTGCAAAAGTTTTTGGTTTGTTGTTGTTGTTGTTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTATGCTTTTTGCAAAAGTTTTTGGTTTGTTGTTGTTGTTGTTGTC  350

seq1  TTGTTTTTCTTCCTGTTGTTGATGATGATGATGTTTGTCTTGTTTTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCTTCCTGTTGTTGATGATGATGATGTTTGTCTTGTTTTGTTA  400

seq1  GAGAGATTTTATTTAAAAAAAAAAAACTAAAGAAATAGTTTGAACTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATTTTATTTAAAAAAAAAAAACTAAAGAAATAGTTTGAACTTGAA  450

seq1  TTGTCATATATCAGTATTAATTCACTTATTGAAACCAATATATTTAGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATATATCAGTATTAATTCACTTATTGAAACCAATATATTTAGTGT  500

seq1  CTTCTTTCTATGCAAGAATTC  521
      |||||||||||||||||||||
seq2  CTTCTTTCTATGCAAGAATTC  521