BAC Information

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BAC

Clone NameB6Ng01-228K24
Chromosome18 (Build37)6 (Build37)
Map Location 17,937,655 - 17,938,75841,192,845 - 41,193,522
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040647
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228K24.bB6Ng01-228K24.g
ACCGA042040GA042041
length1,1091,006
definitionB6Ng01-228K24.b B6Ng01-228K24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,937,655 - 17,938,758)(41,192,845 - 41,193,522)
sequence
gaattccagagccattgtttcttgatgaaagaaatgagaaagtagaaaat
cctaagtatatgtttttaacctctgcaacatgtacagtactaagtttcac
atgtccttattaaatgatttgtggtaaacaaattaatacaactgttacat
cctatttattttatttagggtgggaatgtacatttagaattaggagcaat
cggacttcattcagatgatcctactttttctttttatactatttttaatt
tttaaatatagttgtatctgttttcctttccctttccttcctccaatctc
tcccaagttatcccatccttgctccttctcagaattaggccttgttttgt
tagatttcacacatgatacgtcagagcatggctgccttaaaagacccaag
gttgtacaaaaccaaatgactcattaaaatggaaggggaaaatattacgt
gtctcagagagaaaggtagctaaggatttctacagctgggctatatactc
atccctacggacaaccacctatttttgcctattttgtcattcaatctgct
aacttttgaaaacatatacatgcagataacattaaccagtacccatttct
ttggaaacatccacaaatcccaatccagcaagcagtgtaacacatgccta
ctctccgtcaggcatgattgtggtattgatatgaaccctgcatcaatgtc
ccatttctttttcctagcttgacagatttggctattattggcctgataca
cagtgaacaatagtgaagttctttaacagactccgtggttgttgaaattg
gatgatggcactccaatcaagctcggtttacttggagattctattaaaaa
atactggccaagctgagggttgctaaaatacagatctctctttttttttc
ccttggtatggaatgggggccaatgaatgtctttttagcacagcctcttt
tgattttcatttttttttttttttttgggttttaacttaagtcttcatcc
tttcgggtgaagttaacgtttccttcgctttagcaacattattggttgaa
aacctaggcttttgttttaagttcagatattatcattcaatgaatgctag
gagaataga

gaattcatgtagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgtgc
cggtcccgagttttcttgtatttttttgtcccggattttttctcgtcccg
ggtttcggcaccaattcttaatcgcgttctcacgcccggccaggaaagac
gcaacaaaccaaaatcttctgcggcaaaactttattgcttacatctttgg
gagccaggagggcaagcgcccagcgcccagccccaaaaacgaaagcccct
tcaataatgaaaccgaaaccccttccctatttaggagagttatatttcgc
ctaggacgcatcactccctgattggctgcagcccatggccgagctgacgt
tcacgggaaaggtagagtacaagtagtcataaaatacccttggcacatgc
gcagattatttgtttaccacttagaacacaggatgtcagcgccatcttgt
gacggcgaatgtgggggcggctcccaacagttttgtaaatactttcacat
aggtttatttatttgttccaaaatagaatcaagtgtggcaagcacgatat
acattatcactgttttactaataagggagaagatcagaaaagatgtttta
gttctcatagctaatagcagctttaaaatcaattccaaatctaaaaatgt
ccctgcaatataaatataaattgcaactcctatatgtagaaattaataca
gtagttaagaacataaatgtacttttttttcatgatgtactcatttaggc
acaatattatttttgtataccctttatctaaacacatagtcagacaaaag
tcactaagtcgatccatgtctatctaactactttattaactatgtaacct
gaaatcacatctaattgaatagtaatcaagttttaaaagcatagcaaaaa
caaacactgaaaaccaagatcctgacatactaccaattattctttctgat
atcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17937655_17938758
seq2: B6Ng01-228K24.b_48_1156

seq1  GAATTCCAGAGCCATTGTTTCTTGATGAAAGAAATGAGAAAGTAGAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCATTGTTTCTTGATGAAAGAAATGAGAAAGTAGAAAAT  50

seq1  CCTAAGTATATGTTTTTAACCTCTGCAACATGTACAGTACTAAGTTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTATATGTTTTTAACCTCTGCAACATGTACAGTACTAAGTTTCAC  100

seq1  ATGTCCTTATTAAATGATTTGTGGTAAACAAATTAATACAACTGTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTATTAAATGATTTGTGGTAAACAAATTAATACAACTGTTACAT  150

seq1  CCTATTTATTTTATTTAGGGTGGGAATGTACATTTAGAATTAGGAGCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTATTTTATTTAGGGTGGGAATGTACATTTAGAATTAGGAGCAAT  200

seq1  CGGACTTCATTCAGATGATCCTACTTTTTCTTTTTATACTATTTTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACTTCATTCAGATGATCCTACTTTTTCTTTTTATACTATTTTTAATT  250

seq1  TTTAAATATAGTTGTATCTGTTTTCCTTTCCCTTTCCTTCCTCCAATCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATATAGTTGTATCTGTTTTCCTTTCCCTTTCCTTCCTCCAATCTC  300

seq1  TCCCAAGTTATCCCATCCTTGCTCCTTCTCAGAATTAGGCCTTGTTTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTTATCCCATCCTTGCTCCTTCTCAGAATTAGGCCTTGTTTTGT  350

seq1  TAGATTTCACACATGATACGTCAGAGCATGGCTGCCTTAAAAGACCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTCACACATGATACGTCAGAGCATGGCTGCCTTAAAAGACCCAAG  400

seq1  GTTGTACAAAACCAAATGACTCATTAAAATGGAAGGGGAAAATATTACGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAAAACCAAATGACTCATTAAAATGGAAGGGGAAAATATTACGT  450

seq1  GTCTCAGAGAGAAAGGTAGCTAAGGATTTCTACAGCTGGGCTATATACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGAGAAAGGTAGCTAAGGATTTCTACAGCTGGGCTATATACTC  500

seq1  ATCCCTACGGACAACCACCTATTTTTGCCTATTTTGTCATTCAATCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACGGACAACCACCTATTTTTGCCTATTTTGTCATTCAATCTGCT  550

seq1  AACTTTTGAAAACATATACATGCAGATAACATTAACCAGTACCCATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGAAAACATATACATGCAGATAACATTAACCAGTACCCATTTCT  600

seq1  TTGGAAACATCCACAAATCCCAATCCAGCAAGCAGTGTAACACATGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACATCCACAAATCCCAATCCAGCAAGCAGTGTAACACATGCCTA  650

seq1  CTCTCCGTCAGGCATGATTGTGGTATTGATATGAACCCTGCATCAATGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGTCAGGCATGATTGTGGTATTGATATGAACCCTGCATCAATGTC  700

seq1  CCATTTCTTTTTCCTAGCTTGACAGATTTGGCTATTATTGGCCTGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTTTTTCCTAGCTTGACAGATTTGGCTATTATTGGCCTGATACA  750

seq1  CAGTGAACAATAGTGAAGTTCTTTAACAGACTCCGTGGTTGTTGAAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACAATAGTGAAGTTCTTTAACAGACTCCGTGGTTGTTGAAATTG  800

seq1  GATGATGGCACTCCAATCAAGCTCGGTTTACTTGGAGATTCTATTAAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGGCACTCCAATCAAGCTCGGTTTACTTGGAGATTCTATTAAAAA  850

seq1  ATACTGGCCAAGCTGAGGGTTGCTAAAATACAGATCTCTC-TTTTTTTTC  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATACTGGCCAAGCTGAGGGTTGCTAAAATACAGATCTCTCTTTTTTTTTC  900

seq1  CCTTGGTATGGAATGGGGG-CAATGAATGTC-TTTTAGCACAGCCTCTTT  947
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  CCTTGGTATGGAATGGGGGCCAATGAATGTCTTTTTAGCACAGCCTCTTT  950

seq1  TGATTTTCATTTTTTTTTTTTTTT---GGTTTTTACTT-AGTCTTCATCC  993
      ||||||||||||||||||||||||   |||||| |||| |||||||||||
seq2  TGATTTTCATTTTTTTTTTTTTTTTTGGGTTTTAACTTAAGTCTTCATCC  1000

seq1  CTTCGGGTGAAGTTAACGTTTCCTTCGCTTTTAGCACCA-TATTGG-TGA  1041
       ||||||||||||||||||||||||||| ||||||| || |||||| |||
seq2  TTTCGGGTGAAGTTAACGTTTCCTTCGC-TTTAGCAACATTATTGGTTGA  1049

seq1  AAACCTAGCCTTTTTGTTTTTAAAGGTCAG-TATTATTCATTCATTGAAT  1090
      |||||||| | |||||||||  ||| |||| ||||| ||||||| |||||
seq2  AAACCTAGGC-TTTTGTTTT--AAGTTCAGATATTA-TCATTCAATGAAT  1095

seq1  GCTAGCAGAATAGA  1104
      ||||| ||||||||
seq2  GCTAGGAGAATAGA  1109


seq1: chr6_41192845_41193522
seq2: B6Ng01-228K24.g_66_595 (reverse)

seq1  CTGTTGGGAGCCACCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  50
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGATGGCGCTGACATCC  50

seq1  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTGCCAAGGGTATTTT  100

seq1  ATGACTACTTGTACTCTACCTTTCCCGTGAACGTCAGCTCGGCCATGGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTACTTGTACTCTACCTTTCCCGTGAACGTCAGCTCGGCCATGGGC  150

seq1  TGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACGCTCCTAA  200
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAATATAACTCTCCTAA  200

seq1  AAAAGGGGACGGGGTTTCCGCCATTCTCTCTCGCTGGCATCTCTCTGGCT  250
      | |  |||| ||||||              ||| |  |||          
seq2  ATA--GGGAAGGGGTT--------------TCGGTTTCAT----------  224

seq1  CTGCGCGCCCTGCGCTCTCTCGCTGCCTAAAGATGTAAACAATAGAGCGC  300
                                                        
seq2  --------------------------------------------------  224

seq1  ACTCTGCGCCCCGGCGCGCCGGAGCTCTGGCTCCTAAAGATGTAGATTGA  350
                                                   |||||
seq2  --------------------------------------------TATTGA  230

seq1  AGGGGCTTTCGTTTTTGGGGCTGGGCGCTGGGCGCTTGCCCTCCTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTTTCGTTTTTGGGGCTGGGCGCTGGGCGCTTGCCCTCCTGGCTC  280

seq1  CCAAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTTTGGTTTGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTTTGGTTTGTTGC  330

seq1  GTCTTTCCTGGCCGGGCGTGAGAACGCGATTAAGAATTGGTGCCGAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCTTTCCTGGCCGGGCGTGAGAACGCGATTAAGAATTGGTGCCGAAAC-  379

seq1  CGGGACGAGAAATTCCGGGACGAGAAAAAATCCGGGAAGAAAAAACCCGG  550
                    |||||||||||||||||||||||  ||||||  |  
seq2  --------------CCGGGACGAGAAAAAATCCGGGACAAAAAAATAC--  413

seq1  GAGGAAACTCGGGACGGGAGTTTCACCGGCGCAGGGAAGATCCCTCATTC  600
       || |||||||||           |||||| || ||||||||||||||||
seq2  AAGAAAACTCGGG-----------ACCGGCACAAGGAAGATCCCTCATTC  452

seq1  CAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCAGAACTGCGGGTCGCGGTAATAAAGGTTCCCGTAAAGCAGACT  502

seq1  GTTAAGAAGGATTCAACTGCATGAATTC  678
      |||||||||||||||||| |||||||||
seq2  GTTAAGAAGGATTCAACTACATGAATTC  530


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