BAC Information

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BAC

Clone NameB6Ng01-229G24
Chromosome18 (Build37)
Map Location 65,117,988 - 65,259,497
singlet/doubletdoublet
Overlap geneNedd4l
Upstream geneWdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneAlpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-229G24.bB6Ng01-229G24.g
ACCGA042585GA042586
length1,0681,117
definitionB6Ng01-229G24.b B6Ng01-229G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,258,417 - 65,259,497)(65,117,988 - 65,119,097)
sequence
gaattcatgaccagtacagacttgtagtctctgtttggtagaatttataa
tgtcaaatcttaacacaaacctgggaagaaaagaaatatacatgttccta
aggaacactgacaagtataaaggaaatataagatatggaaagtgtcagac
tttttttttccctgagtctctgtatttattttctgtcccaaggatgatgt
ccgatggacagcaaaccacggttgtaggtctgaaggtaaaatttgctaac
aatctcatttcaagcgcacccaaaattagcaactaattctctccatcttc
tttattaatagactcctgaaactcagagattccagagaaccacagttggc
attaggttggcaaatcacatggaccgaagagaaacacattctaatataat
cattaccaacagacaaacctgataaccccgactggggaaacccctccatc
agttacactttcaggctgctgtttaccaaaaggcaaacacacacacagct
ggtgtgggaggcgggatcccatcccctgatgctgttcaatctagattata
atcaccacaattcatactgacctcaggtttcttagtatgagttgtatgct
gaggatgtagctcagttggtggagagcttgcccagcatgatgaagccgtg
gggctgacccccatcccttcatacactgggcctgcttataatcccggcac
tcagagctggaggcaaaaagaccatggcttccaagatcaacctgggctac
ataagagcctgcctcaaaataacaaataaaaccattttacaactattttt
tctttttctggcatgcttctaaaagagtgacttaaaattgggtttaatga
agactaggtagaacaacttttaagaaatacatcaaaaggagaggtagcca
ttgctcaagaacactgaggccttttgcaaaagtaaataaaccctgggtat
ctctaagtcctgtaacctgaagttataaaggaaaagttgttgatggtgct
catcaagtgagacataaattgaaaaaagacacaccacaacaacaacccaa
aaacttttatgatttccc
gaattctaggagcagcagaaggaacttcaagaaacagaaagcaaaggggg
accagcaccgagtgagcagttgctagggcctgttcacccgtgctgagctt
ttagtatctgagagtatatgtctacacagaattccagggtaatacaatat
gtagtttggccaagaggcaattactttaattgtgacttgagtaatactta
ctgccttttagaaaggcacccttagcctgttctccccatcccgactgctg
taggctgagtaacccctaacccaaacaagcaaaatcaaaaaacgctgtgc
caacacggccccacaagctggaaaaccaaacagcctggagatgttttctg
tccagaatttttaaaattatgattgtgtaaaattaccttcaagctgtgtg
catgaagttatgtgttctgtgggtggattttgtgtttagaacagagtccc
atcctcaagatgtttattgtgaatctgcaaacacaccagaaagcacaaac
aaaacactgaaatacacaacactctggatgcatgccttttgagtgagggt
cattcaacctgtaatatctattcacttgactctgttgagttgttttaact
acacacacacacacacacacacacacacacacacacagagagagagagag
agagagagtcacagggttttgtagtgggtctttttgacagtcattggagt
gggaattgggaagggaccatcaatggaacacctttgggatggcttccatc
actgggctgccacagaggaatggctgcaatggatgttgtgtttgagtgtt
tacattacttctgcagtgctggaatttagctcaacgcgcagctctgtgca
agagtaaacaactgccgggtgtggtttgagtacatctgtaaccctagcag
ttggaaattcagaggcaggaggatatcagttttgagcagcacccctgtac
tcctccctcacttccatatagccaggcccctgtcttcaccacacagatta
aaacagtttccctgtttggtttgggaattgtcacagagtgcccaagtccc
ttagcttttccgagcctcctgttgttagggtagggtacgattaccatggc
cagtcacgctttaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_65258417_65259497
seq2: B6Ng01-229G24.b_48_1115 (reverse)

seq1  GGGAAATCAATAAAAAGGTTTTTTGGGTTTTGTTGTTGTTGTTGTTGTTC  50
      |||||||| ||||||    |||||||     |||||||||| || |||  
seq2  GGGAAATC-ATAAAA---GTTTTTGG-----GTTGTTGTTG-TGGTGTGT  40

seq1  TTTTTTTCAAATTTTATGTCTCACTTGATGAGCACCATCAACAACTTTTC  100
       |||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCAA--TTTATGTCTCACTTGATGAGCACCATCAACAACTTTTC  88

seq1  CTTTTATAACTTCAGGTTACAGGACTTTAGAGATACCCA-GGTTTATTTA  149
      | ||||||||||||||||||||||| ||||||||||||| ||||||||||
seq2  C-TTTATAACTTCAGGTTACAGGAC-TTAGAGATACCCAGGGTTTATTTA  136

seq1  CTTTTGCAAAAGGCCTCAGTGTTCTTGAGCAATGGCTACCTCTCCTTTTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCAAAAGGCCTCAGTGTTCTTGAGCAATGGCTACCTCTCCTTTTG  186

seq1  ATGTATTTCTTAAAAGTTGTTCTACCTAGTCTTCATTAAACCCAATTTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCTTAAAAGTTGTTCTACCTAGTCTTCATTAAACCCAATTTTA  236

seq1  AGTCACTCTTTTAGAAGCATGCCAGAAAAAGAAAAAATAGTTGTAAAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTCTTTTAGAAGCATGCCAGAAAAAGAAAAAATAGTTGTAAAATG  286

seq1  GTTTTATTTGTTATTTTGAGGCAGGCTCTTATGTAGCCCAGGTTGATCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTGTTATTTTGAGGCAGGCTCTTATGTAGCCCAGGTTGATCTT  336

seq1  GGAAGCCATGGTCTTTTTGCCTCCAGCTCTGAGTGCCGGGATTATAAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCATGGTCTTTTTGCCTCCAGCTCTGAGTGCCGGGATTATAAGCA  386

seq1  GGCCCAGTGTATGAAGGGATGGGGGTCAGCCCCACGGCTTCATCATGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGTGTATGAAGGGATGGGGGTCAGCCCCACGGCTTCATCATGCTG  436

seq1  GGCAAGCTCTCCACCAACTGAGCTACATCCTCAGCATACAACTCATACTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTCTCCACCAACTGAGCTACATCCTCAGCATACAACTCATACTA  486

seq1  AGAAACCTGAGGTCAGTATGAATTGTGGTGATTATAATCTAGATTGAACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCTGAGGTCAGTATGAATTGTGGTGATTATAATCTAGATTGAACA  536

seq1  GCATCAGGGGATGGGATCCCGCCTCCCACACCAGCTGTGTGTGTGTTTGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGGGGATGGGATCCCGCCTCCCACACCAGCTGTGTGTGTGTTTGC  586

seq1  CTTTTGGTAAACAGCAGCCTGAAAGTGTAACTGATGGAGGGGTTTCCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGTAAACAGCAGCCTGAAAGTGTAACTGATGGAGGGGTTTCCCCA  636

seq1  GTCGGGGTTATCAGGTTTGTCTGTTGGTAATGATTATATTAGAATGTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGTTATCAGGTTTGTCTGTTGGTAATGATTATATTAGAATGTGTT  686

seq1  TCTCTTCGGTCCATGTGATTTGCCAACCTAATGCCAACTGTGGTTCTCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGGTCCATGTGATTTGCCAACCTAATGCCAACTGTGGTTCTCTG  736

seq1  GAATCTCTGAGTTTCAGGAGTCTATTAATAAAGAAGATGGAGAGAATTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTGAGTTTCAGGAGTCTATTAATAAAGAAGATGGAGAGAATTAG  786

seq1  TTGCTAATTTTGGGTGCGCTTGAAATGAGATTGTTAGCAAATTTTACCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATTTTGGGTGCGCTTGAAATGAGATTGTTAGCAAATTTTACCTT  836

seq1  CAGACCTACAACCGTGGTTTGCTGTCCATCGGACATCATCCTTGGGACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTACAACCGTGGTTTGCTGTCCATCGGACATCATCCTTGGGACAG  886

seq1  AAAATAAATACAGAGACTCAGGGAAAAAAAAAGTCTGACACTTTCCATAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATACAGAGACTCAGGGAAAAAAAAAGTCTGACACTTTCCATAT  936

seq1  CTTATATTTCCTTTATACTTGTCAGTGTTCCTTAGGAACATGTATATTTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATATTTCCTTTATACTTGTCAGTGTTCCTTAGGAACATGTATATTTC  986

seq1  TTTTCTTCCCAGGTTTGTGTTAAGATTTGACATTATAAATTCTACCAAAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCAGGTTTGTGTTAAGATTTGACATTATAAATTCTACCAAAC  1036

seq1  AGAGACTACAAGTCTGTACTGGTCATGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  AGAGACTACAAGTCTGTACTGGTCATGAATTC  1068

seq1: chr18_65117988_65119097
seq2: B6Ng01-229G24.g_67_1183

seq1  GAATTCTAGGAGCAGCAGAAGGAACTTCAAGAAACAGAAAGCAAAGGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGAGCAGCAGAAGGAACTTCAAGAAACAGAAAGCAAAGGGGG  50

seq1  ACCAGCACCGAGTGAGCAGTTGCTAGGGCCTGTTCACCCGTGCTGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCACCGAGTGAGCAGTTGCTAGGGCCTGTTCACCCGTGCTGAGCTT  100

seq1  TTAGTATCTGAGAGTATATGTCTACACAGAATTCCAGGGTAATACAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTGAGAGTATATGTCTACACAGAATTCCAGGGTAATACAATAT  150

seq1  GTAGTTTGGCCAAGAGGCAATTACTTTAATTGTGACTTGAGTAATACTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTTGGCCAAGAGGCAATTACTTTAATTGTGACTTGAGTAATACTTA  200

seq1  CTGCCTTTTAGAAAGGCACCCTTAGCCTGTTCTCCCCATCCCGACTGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTTTAGAAAGGCACCCTTAGCCTGTTCTCCCCATCCCGACTGCTG  250

seq1  TAGGCTGAGTAACCCCTAACCCAAACAAGCAAAATCAAAAAACGCTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAGTAACCCCTAACCCAAACAAGCAAAATCAAAAAACGCTGTGC  300

seq1  CAACACGGCCCCACAAGCTGGAAAACCAAACAGCCTGGAGATGTTTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACGGCCCCACAAGCTGGAAAACCAAACAGCCTGGAGATGTTTTCTG  350

seq1  TCCAGAATTTTTAAAATTATGATTGTGTAAAATTACCTTCAAGCTGTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTTTTAAAATTATGATTGTGTAAAATTACCTTCAAGCTGTGTG  400

seq1  CATGAAGTTATGTGTTCTGTGGGTGGATTTTGTGTTTAGAACAGAGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGTTATGTGTTCTGTGGGTGGATTTTGTGTTTAGAACAGAGTCCC  450

seq1  ATCCTCAAGATGTTTATTGTGAATCTGCAAACACACCAGAAAGCACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAAGATGTTTATTGTGAATCTGCAAACACACCAGAAAGCACAAAC  500

seq1  AAAACACTGAAATACACAACACTCTGGATGCATGCCTTTTGAGTGAGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACACTGAAATACACAACACTCTGGATGCATGCCTTTTGAGTGAGGGT  550

seq1  CATTCAACCTGTAATATCTATTCACTTGACTCTGTTGAGTTGTTTTAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAACCTGTAATATCTATTCACTTGACTCTGTTGAGTTGTTTTAACT  600

seq1  ACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAG  650

seq1  AGAGAGAGTCACAGGGTTTTGTAGTGGGTCTTTTTGACAGTCATTGGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGTCACAGGGTTTTGTAGTGGGTCTTTTTGACAGTCATTGGAGT  700

seq1  GGGAATTGGGAAGGGACCATCAATGGAACACCTTTGGGATGGCTTCCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGGGAAGGGACCATCAATGGAACACCTTTGGGATGGCTTCCATC  750

seq1  ACTGGGCTGCCACAGAGGAATGGCTGCAATGGATGTTGTGTTTGAGTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGCTGCCACAGAGGAATGGCTGCAATGGATGTTGTGTTTGAGTGTT  800

seq1  TACATTACTTCTGCAGTGCT-GAATTTAGCTCAACGCGCAGCTCTGTGCA  849
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TACATTACTTCTGCAGTGCTGGAATTTAGCTCAACGCGCAGCTCTGTGCA  850

seq1  AGAGTAAAC-ACTGCCGGGTGTGGTTTGAGTACATCTGTAACCCTAGCAG  898
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAAACAACTGCCGGGTGTGGTTTGAGTACATCTGTAACCCTAGCAG  900

seq1  TTGGAAA-TCAGAGGCAGGAGGATATCAAGTTTGAGCAGCACCCCTGTAC  947
      ||||||| ||||||||||||||||||||  ||||||||||||||||||||
seq2  TTGGAAATTCAGAGGCAGGAGGATATCAGTTTTGAGCAGCACCCCTGTAC  950

seq1  T-CTCCCTCACTTCCCATATAGCCAGCCCCCTGTCTCAACCACACAGATT  996
      | ||||||||||| |||||||||||| |||||||||  ||||||||||||
seq2  TCCTCCCTCACTT-CCATATAGCCAGGCCCCTGTCTTCACCACACAGATT  999

seq1  AAAACAGTTTTCCTGTTT-GTTTGG--AATGTCACAGAAGGTGCCCAAAA  1043
      |||||||||| ||||||| ||||||  | |||||||||  ||||||||  
seq2  AAAACAGTTTCCCTGTTTGGTTTGGGAATTGTCACAGA--GTGCCCAAGT  1047

seq1  GCCTTAGCTTT--CGAAGCTCCTGTTGTTA-GGTAGGGTACGATTA-CGT  1089
       ||||||||||  |||  |||||||||||| ||||||||||||||| | |
seq2  CCCTTAGCTTTTCCGAGCCTCCTGTTGTTAGGGTAGGGTACGATTACCAT  1097

seq1  GGCTCCAG-CACGCTTTTAGCA  1110
      ||  |||| |||||||| ||||
seq2  GG--CCAGTCACGCTTTAAGCA  1117