BAC Information

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BAC

Clone NameB6Ng01-230D10
Chromosome18 (Build37)
Map Location 17,960,343 - 18,136,853
singlet/doubletdoublet
Overlap geneLOC100040647
Upstream geneCdh2, LOC665519, 1700001G01Rik, 4921533I20Rik
Downstream geneLOC100040658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230D10.bB6Ng01-230D10.g
ACCGA043137GA043138
length1,0311,117
definitionB6Ng01-230D10.b B6Ng01-230D10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,960,343 - 17,961,376)(18,135,724 - 18,136,853)
sequence
gaattcaaaataggtcctttgcaggagaaaccagtgttcttaactaccaa
atcatctctccagataccattttaaactgttttcatcaactgctggcacc
acgcaagccaccatgagcttatgttcctgggtcactttcctactccacag
cacttaagctgaagaagtttgctccctctttctgtaatgtgtctcttctc
attttgttgtaaattcttttcattttttgaacacagagtgaagccctaat
tctttatccacttcctaagactgccttttctcttctgggaagaatattgc
tgataataacttgtaatgctagttttcttcactagtttatcaaagtacat
cttctatacagaacgtaaggtttattcaaaactgataaaagagagatgtt
ctactaaatgaaatagcaaccagtatttgttcaaatcaacgttgtagatt
ttcccaagtatatgtgtttccaccaaatgactcatatttataattctgat
attgtctttcttattttctttgaactttttttggattttttaaaatattt
tttattattacgtatgttcctcaattacatttagaatgctatcctaaaag
tcccccataccctccccccccacttccctacccatccattcccatttttt
ggccctggcattcccctgtactggggcatataaagtttgcttgtccaatg
ggcctctctttccagtgatggcctactaggccatcttttgatacatatgc
agctagagtcaaaagatccggggtactggttagttcataatgttgttgca
cctacagggttgcagatctcttcagctccttggatactttctctagctcc
tccattgggggcgctgtgctccatccatagctgactgtgagcatctacgt
atgtgtttgctagacccagcatagtctcacaagagacagctatatcaggt
ccttttcagcaaaatcttgctagtgtatgcaatggtgtcatcgtttgagc
taattatgggatggattctctggatatggca

gaattccttagacaattaatacatattaatatttcacttctgtttttttt
gttcagataatgaagaaataatagaccttaattatatttgaaaaataaat
tggacaatattttggcaattttttttctgtctaataagtaaaactgtgaa
tcctatgcttgacaagtaaacaaggaggcaaagacagagagagaccaaga
catataaccagagacagagaaacacaaaaagatatcaaccaaaatttgaa
atattttaagtaaaattgtctgcaatctaatatgacaaaataactgcaca
tgtaggcgttgcatctacgtgttctccttgacatttgatatggtgaatga
gtggaagagagcctcaattgtaatgtgatatattacttctctttcacgtt
ctcacacaacctttaggaacttgttctcacattatttgttgtgcggctat
ggataacgtcattctctttctagtttctcttttatttacagctatgtttt
tcttcatacagttttactttccaacagtctttaaatttttaaagtcttct
ttaatttcagaaatttcttgctattttttttcaatatttttccttataag
gttaggttgattccacttgtaaagtattcgattcttcagaaaaagaagag
atatttttgcattaggctcctatttaatattcacctttctggcattcttt
gttgcttttcctttgtaatctgctcatatttttactagttgctaatcctt
ggtattaagcatttgtaattaagctcagctataattttatgcatagtatt
attataatcggttacagttttatcttaaaatgttatttttattatttcat
ttttttttcttttgggatggggtcccattacactatactaacctccactc
ataaatagctgaagatgattctatgtttgatcttccagccctacttcttg
aagacaggtactatgagatgctttatcatattagtacaagagtggtgtgg
gtgaccagggcatgcatatgaagagaaaatatctacagctaaaatacatc
atcactacaaaatattctgagtattcttttcttcacattccactctatgc
acaggtaacaacctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_17960343_17961376
seq2: B6Ng01-230D10.b_43_1073

seq1  GAATTCAAAATAGGTCCTTTGCAGGAGAAACCAGTGTTCTTAACTACCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATAGGTCCTTTGCAGGAGAAACCAGTGTTCTTAACTACCAA  50

seq1  ATCATCTCTCCAGATACCATTTTAAACTGTTTTCATCAACTGCTGGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCTCTCCAGATACCATTTTAAACTGTTTTCATCAACTGCTGGCACC  100

seq1  ACGCAAGCCACCATGAGCTTATGTTCCTGGGTCACTTTCCTACTCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAAGCCACCATGAGCTTATGTTCCTGGGTCACTTTCCTACTCCACAG  150

seq1  CACTTAAGCTGAAGAAGTTTGCTCCCTCTTTCTGTAATGTGTCTCTTCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAAGCTGAAGAAGTTTGCTCCCTCTTTCTGTAATGTGTCTCTTCTC  200

seq1  ATTTTGTTGTAAATTCTTTTCATTTTTTGAACACAGAGTGAAGCCCTAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTGTAAATTCTTTTCATTTTTTGAACACAGAGTGAAGCCCTAAT  250

seq1  TCTTTATCCACTTCCTAAGACTGCCTTTTCTCTTCTGGGAAGAATATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATCCACTTCCTAAGACTGCCTTTTCTCTTCTGGGAAGAATATTGC  300

seq1  TGATAATAACTTGTAATGCTAGTTTTCTTCACTAGTTTATCAAAGTACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATAACTTGTAATGCTAGTTTTCTTCACTAGTTTATCAAAGTACAT  350

seq1  CTTCTATACAGAACGTAAGGTTTATTCAAAACTGATAAAAGAGAGATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTATACAGAACGTAAGGTTTATTCAAAACTGATAAAAGAGAGATGTT  400

seq1  CTACTAAATGAAATAGCAACCAGTATTTGTTCAAATCAACGTTGTAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAATGAAATAGCAACCAGTATTTGTTCAAATCAACGTTGTAGATT  450

seq1  TTCCCAAGTATATGTGTTTCCACCAAATGACTCATATTTATAATTCTGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAAGTATATGTGTTTCCACCAAATGACTCATATTTATAATTCTGAT  500

seq1  ATTGTCTTTCTTATTTTCTTTGAACTTTTTTTGGATTTTTTAAAATATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTTCTTATTTTCTTTGAACTTTTTTTGGATTTTTTAAAATATTT  550

seq1  TTTATTATTACGTATGTTCCTCAATTACATTTAGAATGCTATCCTAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTACGTATGTTCCTCAATTACATTTAGAATGCTATCCTAAAAG  600

seq1  TCCCCCATACCCTCCCCCCCCACTTCCCTACCCATCCATTCCCATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCATACCCTCCCCCCCCACTTCCCTACCCATCCATTCCCATTTTTT  650

seq1  GGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCTTGTCCAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCTTGTCCAATG  700

seq1  GGCCTCTCTTTCCAGTGATGGCCTACTAGGCCATCTTTTGATACATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTCTTTCCAGTGATGGCCTACTAGGCCATCTTTTGATACATATGC  750

seq1  AGCTAGAGTCAAAAGATCCGGGGTACTGGTTAGTTCATAATGTTGTTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAGTCAAAAGATCCGGGGTACTGGTTAGTTCATAATGTTGTTGCA  800

seq1  CCTACAGGGTTGCAGATCTCTTCAGCTCCTTGGATACTTTCTCTAGCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGGGTTGCAGATCTCTTCAGCTCCTTGGATACTTTCTCTAGCTCC  850

seq1  TCCATTGGGGGCGCTGTGCTCCATCCAATAGCTGACTGTGAGCATCTACG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCCATTGGGGGCGCTGTGCTCCATCC-ATAGCTGACTGTGAGCATCTACG  899

seq1  TATGTGTTTGCTAGACCCCAGCATAGTCTCACAAGAGACAGCTATATCAG  950
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTGCTAGA-CCCAGCATAGTCTCACAAGAGACAGCTATATCAG  948

seq1  GGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCGTTTGG  1000
      |  | |||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTCCTTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCGTTTG-  997

seq1  AGGCTAATTATGGGATGGA-TCTCTGGATATGGCA  1034
        ||||||||||||||||| |||||||||||||||
seq2  -AGCTAATTATGGGATGGATTCTCTGGATATGGCA  1031


seq1: chr18_18135724_18136853
seq2: B6Ng01-230D10.g_66_1182 (reverse)

seq1  CATAGTTTTGTTA-CTGTGCATAAGAATGTGAATGTGAAGAAAAGAATTT  49
      |||||  |||||| |||||||| ||| || |||||||||||||||||  |
seq2  CATAG-GTTGTTACCTGTGCAT-AGAGTG-GAATGTGAAGAAAAGAA--T  45

seq1  ACTCAAGAATATTTTTGTAGTTGATGATGTATTTTAGCTGGTAGAATATT  99
      |||| |||||| |||||||| |||||||||||||||||| |||||   ||
seq2  ACTC-AGAATA-TTTTGTAG-TGATGATGTATTTTAGCT-GTAGATATTT  91

seq1  TCTCTTTCATATGCATGCCCTGGGTTCAACCCACACCACTCTTGTACCTA  149
      |||| ||||||||||||||||||  || |||||||||||||||||| |||
seq2  TCTC-TTCATATGCATGCCCTGG--TC-ACCCACACCACTCTTGTA-CTA  136

seq1  ATATGATAAAGCATCCTCATAGTACCTGTCTTCAAGAAGTAGGGCTGGAA  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATATGATAAAGCAT-CTCATAGTACCTGTCTTCAAGAAGTAGGGCTGGAA  185

seq1  GATCAAACATAGAATCATCTTCAGCTATTTATGAGTGGAGGTTAGTATAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAACATAGAATCATCTTCAGCTATTTATGAGTGGAGGTTAGTATAG  235

seq1  TGTAATGGGACCCCATCCCAAAAG-AAAAAAAATGAAATAATAAAAATAA  298
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTAATGGGACCCCATCCCAAAAGAAAAAAAAATGAAATAATAAAAATAA  285

seq1  CATTTTAAGATAAAACTGTAACCGATTATAATAATACTATGCATAAAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAAGATAAAACTGTAACCGATTATAATAATACTATGCATAAAATT  335

seq1  ATAGCTGAGCTTAATTACAAATGCTTAATACCAAGGATTAGCAACTAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTGAGCTTAATTACAAATGCTTAATACCAAGGATTAGCAACTAGTA  385

seq1  AAAATATGAGCAGATTACAAAGGAAAAGCAACAAAGAATGCCAGAAAGGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATGAGCAGATTACAAAGGAAAAGCAACAAAGAATGCCAGAAAGGT  435

seq1  GAATATTAAATAGGAGCCTAATGCAAAAATATCTCTTCTTTTTCTGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTAAATAGGAGCCTAATGCAAAAATATCTCTTCTTTTTCTGAAGA  485

seq1  ATCGAATACTTTACAAGTGGAATCAACCTAACCTTATAAGGAAAAATATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAATACTTTACAAGTGGAATCAACCTAACCTTATAAGGAAAAATATT  535

seq1  GAAAAAAAATAGCAAGAAATTTCTGAAATTAAAGAAGACTTTAAAAATTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAATAGCAAGAAATTTCTGAAATTAAAGAAGACTTTAAAAATTT  585

seq1  AAAGACTGTTGGAAAGTAAAACTGTATGAAGAAAAACATAGCTGTAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTGTTGGAAAGTAAAACTGTATGAAGAAAAACATAGCTGTAAATA  635

seq1  AAAGAGAAACTAGAAAGAGAATGACGTTATCCATAGCCGCACAACAAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAACTAGAAAGAGAATGACGTTATCCATAGCCGCACAACAAATA  685

seq1  ATGTGAGAACAAGTTCCTAAAGGTTGTGTGAGAACGTGAAAGAGAAGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGAACAAGTTCCTAAAGGTTGTGTGAGAACGTGAAAGAGAAGTAA  735

seq1  TATATCACATTACAATTGAGGCTCTCTTCCACTCATTCACCATATCAAAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCACATTACAATTGAGGCTCTCTTCCACTCATTCACCATATCAAAT  785

seq1  GTCAAGGAGAACACGTAGATGCAACGCCTACATGTGCAGTTATTTTGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGGAGAACACGTAGATGCAACGCCTACATGTGCAGTTATTTTGTCA  835

seq1  TATTAGATTGCAGACAATTTTACTTAAAATATTTCAAATTTTGGTTGATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGATTGCAGACAATTTTACTTAAAATATTTCAAATTTTGGTTGATA  885

seq1  TCTTTTTGTGTTTCTCTGTCTCTGGTTATATGTCTTGGTCTCTCTCTGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTGTTTCTCTGTCTCTGGTTATATGTCTTGGTCTCTCTCTGTC  935

seq1  TTTGCCTCCTTGTTTACTTGTCAAGCATAGGATTCACAGTTTTACTTATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCTCCTTGTTTACTTGTCAAGCATAGGATTCACAGTTTTACTTATT  985

seq1  AGACAGAAAAAAAATTGCCAAAATATTGTCCAATTTATTTTTCAAATATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAAAAAATTGCCAAAATATTGTCCAATTTATTTTTCAAATATA  1035

seq1  ATTAAGGTCTATTATTTCTTCATTATCTGAACAAAAAAAACAGAAGTGAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTCTATTATTTCTTCATTATCTGAACAAAAAAAACAGAAGTGAA  1085

seq1  ATATTAATATGTATTAATTGTCTAAGGAATTC  1130
      ||||||||||||||||||||||||||||||||
seq2  ATATTAATATGTATTAATTGTCTAAGGAATTC  1117


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