BAC Information

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BAC

Clone NameB6Ng01-230J01
Chromosome18 (Build37)
Map Location 58,716,890 - 58,814,464
singlet/doubletdoublet
Overlap geneSlc27a6
Upstream gene1700011I03Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
Downstream geneIsoc1, Adamts19, A730017C20Rik, 4833446K15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-230J01.bB6Ng01-230J01.g
ACCGA043397GA043398
length1,1181,102
definitionB6Ng01-230J01.b B6Ng01-230J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,813,380 - 58,814,464)(58,716,890 - 58,717,975)
sequence
gaattcactcataagcctagaccttcaggcacagcaatttagtattacag
tacactgcaacggaacaaacctcagcaaaaagcatgccatacccagagaa
aatcagagtatatggctaactcctgcaatgcagcagtaagagacaatgga
tactgttgaaagaggatgaaagattacttgacagaagaaagataaatgcc
caagaagcacacaagtgtgtgcatcgagaagtcaggaaggcacaaataaa
atgtacacagtgttctatttcacagtcattaaaccagttaaaagatcaaa
caatatgtgcagactcctgctacttttggatcctgaaaccctggctaagg
gcagagaaggaatgagaagggacagacacacaggcactgttcagtgaagc
tagaataagatggtgtctataaatgcagcctagaacctccgtgtttgtgt
tcattgggtacagcactgggggaggagctagctagtctccagaggaggtc
tgcaagtgagtaatctctcagagctactttatcacagtggaagaaaagca
attaatttatgtgcataaagatacaagcaggtgactggtttaagatcaga
aaataaaggagttgattaagtgttcatatctttctgtgacacattcccat
atactctttttaaatctctcctgttcttttgtctctgtgtagtatactca
tctgtcactgcgtctaaggcagccgtaatttctgacctgctctgctattc
ctagctgtcatattttcttttcaaagaatttgctttcagagacacatttc
tattttagtacattcacttctccacgatcatccttttgaggacagaaagt
gtttataatttattacgtttttgaattttgggcattttctatgtatttgc
atcaaggatgtttctgttctagtgtgggagttcttggttcatttttttca
attaatagacctcctggaaatgggaaagaaaaaaaattgaaatccaacct
tataaacctcttttccttaacctgcaaaattccttatttgtctaccaaat
ttttgtcttaaggattctttggaaattgcccagctttcaaggaagcctgg
cttacacctctactcaat

gaattcaagagatacagggctgattctgttatttcatcagccttgacaaa
tgtctcatgaataagaaagctatcaagtttttacgtgttttttttttccc
atagtaactttatggagaatgaatgcatttggataacagaacatttaaag
gcgagattcacacattcttatatccattcctgcacttaattacatactct
gcaggctaggatttgacagagcaaggctgggctgcccatcagtcaggagc
aggctcgtgacagacaataatcttttcccttgttttattcccccttcatt
ttctttcagttacgttcttccttccctgatgtgagttgagatatctacta
ttacacatattcacaatgaaaaacataaatctctgatttcaatgagtaat
taactaaggaaccagggaggtgggttgctcaataaactgaaatagctacc
atgatagtaacttggtacaatctaaaaggtttagatcatttcttctgcac
agagctaaaaatgtcatgcagatgtccctggtaaagagcttggtaaaatt
acttaggtatcttagattaattgatacataccagttcttcatataggatt
tcagaatcccgtgagagtatggaacataatctaatttctgctttattgat
gactaaaaaggtagacatttcctgtttgcttttctcacatattcacacat
agctgtaggcacaagaaggggctggccgtcaacaccgtcattcttcctac
atctctgtgtccttccaacctatcttgtgattcagtcaagtcgaaatgtt
tatttgtcaagcacaggtttcagctagtttaggggcataggaacagagaa
gccaagagtgtccctcgagtgctgtctgggtgatttcctctgcccctatg
ttccatttcactttgtaaagaggttgtgtttgtacactgaggccttcagt
gacctgtgggtaagggagtaggatcaatggaatcatgcaaaattttggac
aggtgtggctaaacagtgtgatcaatgactagaagctgtgatgttgggca
gaaaaaaataggcagtgtttaatttatctgtggacatactctggctttta
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_58813380_58814464
seq2: B6Ng01-230J01.b_50_1167 (reverse)

seq1  ATTGAGTAGAGGTGT-AGCCAAGCTTCCT--GAAGCTGGGCAATTTC--A  45
      ||||||||||||||| ||||| |||||||   |||||||||||||||  |
seq2  ATTGAGTAGAGGTGTAAGCCAGGCTTCCTTGAAAGCTGGGCAATTTCCAA  50

seq1  AGA--TCTTAAGAC--AAATTTTGTAGAC-AATA--GGATTTTCCAGTTT  88
      |||   ||||||||  |||||| |||||| ||||  | ||||| ||| ||
seq2  AGAATCCTTAAGACAAAAATTTGGTAGACAAATAAGGAATTTTGCAGGTT  100

seq1  A--GGAAAGA-GTTTATAA-GTTGGATTTCATTTTTTTTTC-TTCCCA-T  132
      |  | ||||| |||||||| ||||||||||| ||||||||| |||||| |
seq2  AAGGAAAAGAGGTTTATAAGGTTGGATTTCAATTTTTTTTCTTTCCCATT  150

seq1  TCCAGGA-GTCTATTTATTG--AAAAATGAACCA--GACT-CCACACTAG  176
      ||||||| ||||||| ||||  ||||||||||||   ||| |||||||||
seq2  TCCAGGAGGTCTATTAATTGAAAAAAATGAACCAAGAACTCCCACACTAG  200

seq1  -ACAGAAACATCC-TGATGC-AATACATAG-AAATG-CCAAAATTC-AAA  220
       |||||||||||| |||||| ||||||||| ||||| ||||||||| |||
seq2  AACAGAAACATCCTTGATGCAAATACATAGAAAATGCCCAAAATTCAAAA  250

seq1  ACGTAATAAATTATAAACACTTTCTGTCCTC-AAAGGATGATCGTGGAGA  269
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ACGTAATAAATTATAAACACTTTCTGTCCTCAAAAGGATGATCGTGGAGA  300

seq1  AGTGAATGTACTAAAATAGAAATGTGTCTCTGAAAGCAAATTCTTTGAAA  319
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATGTACTAAAATAGAAATGTGTCTCTGAAAGCAAATTCTTTGAAA  350

seq1  AGAAAATATGACAGCTAGGAATAGCAGAGCAGGTCAG-AATTACGGCTGC  368
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGAAAATATGACAGCTAGGAATAGCAGAGCAGGTCAGAAATTACGGCTGC  400

seq1  CTTAGACGCAGTGACAGATGAGTATACTACACAGAGACAAAAGAACAGGA  418
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACGCAGTGACAGATGAGTATACTACACAGAGACAAAAGAACAGGA  450

seq1  GAGATTTAAAAAGAGTATATGGGAATGTGTCACAGAAAGATATGAACACT  468
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTAAAAAGAGTATATGGGAATGTGTCACAGAAAGATATGAACACT  500

seq1  TAATCAACTCCTTTATTTTCTGATCTTAAACCAGTCACCTGCTTGTATCT  518
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACTCCTTTATTTTCTGATCTTAAACCAGTCACCTGCTTGTATCT  550

seq1  TTATGCACATAAATTAATTGCTTTTCTTCCACTGTGATAAAGTAGCTCTG  568
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCACATAAATTAATTGCTTTTCTTCCACTGTGATAAAGTAGCTCTG  600

seq1  AGAGATTACTCACTTGCAGACCTCCTCTGGAGACTAGCTAGCTCCTCCCC  618
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTACTCACTTGCAGACCTCCTCTGGAGACTAGCTAGCTCCTCCCC  650

seq1  CAGTGCTGTACCCAATGAACACAAACACGGAGGTTCTAGGCTGCATTTAT  668
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGTACCCAATGAACACAAACACGGAGGTTCTAGGCTGCATTTAT  700

seq1  AGACACCATCTTATTCTAGCTTCACTGAACAGTGCCTGTGTGTCTGTCCC  718
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCATCTTATTCTAGCTTCACTGAACAGTGCCTGTGTGTCTGTCCC  750

seq1  TTCTCATTCCTTCTCTGCCCTTAGCCAGGGTTTCAGGATCCAAAAGTAGC  768
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATTCCTTCTCTGCCCTTAGCCAGGGTTTCAGGATCCAAAAGTAGC  800

seq1  AGGAGTCTGCACATATTGTTTGATCTTTTAACTGGTTTAATGACTGTGAA  818
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGCACATATTGTTTGATCTTTTAACTGGTTTAATGACTGTGAA  850

seq1  ATAGAACACTGTGTACATTTTATTTGTGCCTTCCTGACTTCTCGATGCAC  868
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACACTGTGTACATTTTATTTGTGCCTTCCTGACTTCTCGATGCAC  900

seq1  ACACTTGTGTGCTTCTTGGGCATTTATCTTTCTTCTGTCAAGTAATCTTT  918
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGTGTGCTTCTTGGGCATTTATCTTTCTTCTGTCAAGTAATCTTT  950

seq1  CATCCTCTTTCAACAGTATCCATTGTCTCTTACTGCTGCATTGCAGGAGT  968
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTTCAACAGTATCCATTGTCTCTTACTGCTGCATTGCAGGAGT  1000

seq1  TAGCCATATACTCTGATTTTCTCTGGGTATGGCATGCTTTTTGCTGAGGT  1018
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCATATACTCTGATTTTCTCTGGGTATGGCATGCTTTTTGCTGAGGT  1050

seq1  TTGTTCCGTTGCAGTGTACTGTAATACTAAATT-CTGTGCCTGAAGGTCT  1067
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTGTTCCGTTGCAGTGTACTGTAATACTAAATTGCTGTGCCTGAAGGTCT  1100

seq1  AGGCTTATGAGTGAATTC  1085
      ||||||||||||||||||
seq2  AGGCTTATGAGTGAATTC  1118


seq1: chr18_58716890_58717975
seq2: B6Ng01-230J01.g_68_1169

seq1  GAATTCAAGAGATACAGGGCTGATTCTGTTATTTCATCAGCCTTGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGATACAGGGCTGATTCTGTTATTTCATCAGCCTTGACAAA  50

seq1  TGTCTCATGAATAAGAAAGCTATCAAGTTTTTACGTGTTTTTTTTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCATGAATAAGAAAGCTATCAAGTTTTTACGTGTTTTTTTTTTCCC  100

seq1  ATAGTAACTTTATGGAGAATGAATGCATTTGGATAACAGAACATTTAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACTTTATGGAGAATGAATGCATTTGGATAACAGAACATTTAAAG  150

seq1  GCGAGATTCACACATTCTTATATCCATTCCTGCACTTAATTACATACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGATTCACACATTCTTATATCCATTCCTGCACTTAATTACATACTCT  200

seq1  GCAGGCTAGGATTTGACAGAGCAAGGCTGGGCTGCCCATCAGTCAGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTAGGATTTGACAGAGCAAGGCTGGGCTGCCCATCAGTCAGGAGC  250

seq1  AGGCTCGTGACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGTGACAGACAATAATCTTTTCCCTTGTTTTATTCCCCCTTCATT  300

seq1  TTCTTTCAGTTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAGTTACGTTCTTCCTTCCCTGATGTGAGTTGAGATATCTACTA  350

seq1  TTACACATATTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATATTCACAATGAAAAACATAAATCTCTGATTTCAATGAGTAAT  400

seq1  TAACTAAGGAACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAAGGAACCAGGGAGGTGGGTTGCTCAATAAACTGAAATAGCTACC  450

seq1  ATGATAGTAACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTAACTTGGTACAATCTAAAAGGTTTAGATCATTTCTTCTGCAC  500

seq1  AGAGCTAAAAATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAAAAATGTCATGCAGATGTCCCTGGTAAAGAGCTTGGTAAAATT  550

seq1  ACTTAGGTATCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGTATCTTAGATTAATTGATACATACCAGTTCTTCATATAGGATT  600

seq1  TCAGAATCCCGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATCCCGTGAGAGTATGGAACATAATCTAATTTCTGCTTTATTGAT  650

seq1  GACTAAAAAGGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAAAGGTAGACATTTCCTGTTTGCTTTTCTCACATATTCACACAT  700

seq1  AGCTGTAGGCACAAGAA-GGGCTGGCCGTCAACACCGTCATTCTTCCTAC  749
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTGTAGGCACAAGAAGGGGCTGGCCGTCAACACCGTCATTCTTCCTAC  750

seq1  ATCTCTGTGTCCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTGTCCTTCCAACCTATCTTGTGATTCAGTCAAGTCGAAATGTT  800

seq1  TA-TTGTCAAGCACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAA  848
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCAAGCACAGGTTTCAGCTAGTTTAGGGGCATAGGAACAGAGAA  850

seq1  GCCAAGAGTGTCCCTCGAGTGCTGTCT-GGTGATTTCCTCTG-CCCTATG  896
      ||||||||||||||||||||||||||| |||||||||||||| |||||||
seq2  GCCAAGAGTGTCCCTCGAGTGCTGTCTGGGTGATTTCCTCTGCCCCTATG  900

seq1  TTCCATTTCACTTTGTAAAGAGG-TGTGTTTGTACACTGAGG-CTTCAGT  944
      ||||||||||||||||||||||| |||||||||||||||||| |||||||
seq2  TTCCATTTCACTTTGTAAAGAGGTTGTGTTTGTACACTGAGGCCTTCAGT  950

seq1  GACCTGT-GGTAA-GGAGTAGGATCAAT-GAATCATGCAGAATTTT-GAC  990
      ||||||| ||||| |||||||||||||| |||||||||| |||||| |||
seq2  GACCTGTGGGTAAGGGAGTAGGATCAATGGAATCATGCAAAATTTTGGAC  1000

seq1  A-GTGTGGCTAAACAGTGTTGATCAATGACTAG-AGCTGTGAATGT--GG  1036
      | |||||||||||||||| |||||||||||||| ||||||| ||||  ||
seq2  AGGTGTGGCTAAACAGTG-TGATCAATGACTAGAAGCTGTG-ATGTTGGG  1048

seq1  CAG--AAAAATAAGCAGTGTTTA--TTATCTGTGGACATACTCTGGCTTT  1082
      |||  ||||||| ||||||||||  |||||||||||||||||||||||||
seq2  CAGAAAAAAATAGGCAGTGTTTAATTTATCTGTGGACATACTCTGGCTTT  1098

seq1  TATT  1086
      ||||
seq2  TATT  1102


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