BAC Information

Click to search

BAC

Clone NameB6Ng01-231H11
Chromosome18 (Build37)
Map Location 70,188,937 - 70,353,878
singlet/doubletdoublet
Overlap geneRab27b
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-231H11.bB6Ng01-231H11.g
ACCGA044061GA044062
length1,167960
definitionB6Ng01-231H11.b B6Ng01-231H11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,188,937 - 70,190,099)(70,352,923 - 70,353,878)
sequence
ggaattcgccttttagaaagttctgcttttctcagtagggagactgacta
cggttcagacatagcacaaaagtaaataatttagaagtttgttaatcatc
cttcaaatttgaatgatatacaatagtgactagtagtttttgcgggaaga
aggcattttgataaattatagaatatttaatgactgaaactaaacttctt
ccttcagcctacctttagctagttatcatttgaaaagtatgaatcaatat
ttgctagacagaaacaaaatgccacatagcttatcaagcgagccttgttt
ccatagcttatcaaaacccggaacatgttcgaggttgctacgttttctac
tattaatggttctataaatattttattcacatctactgtctgtactctat
attaccggggatctgtctatcttctgtggtgtacattgtatacatctcag
ggtctgtcttctaaaatgtatactctctatatccccagagtctgtcttct
aaagtgtatactctatatccccagggtctgtcttctaaagtgtatactct
ctatatccccagggtctgtcttctaaagtgtatactctttatatccccag
ggtctgtcttctaaagtgtatactctctatatccccaggatctgtgttct
gcagtgtcagtagttgtaggaagtgagaggcaaacattatctcttcaata
tggccatggaaaactaatactgaaaggtccttcaagtagattttataaac
agtgtgcccaaaggcattactttatcaagaaggtatccattggctttttg
aatggctgttagaattctgacccataacaaatcatgaatggacccttaag
caggtgtctagctgctcacagccctatcttgctgctggtgaaccaaggag
agagcacaataaggttgaagcaaccttgactactccacagtcaagttgtg
tgctttctcttattatacatcaatgcttcagagcaatcagcatatgatcc
caaattctggcccttttgagaagtaagtctggaagaaagttgtcagccac
accctttagggttgtgtgcccagtcagcagtggcttttatggtgttcacc
acagcatgatcaattcaatgtttcccaataatccctactaatgctggaga
tattttatttggaaaga

gaattcttcatacataggtagacaccctggacctcagtcagatagtagat
tctaagtggcattcaaattagtcacatataatcacaaggctcatttacat
ctttcctagttgtgttcagatctagctgcttgtcctgtacatagacagca
gacagctgcccagacatgttttacatattgtctttagagacttggtgaca
tgtgtctgcctaggacagttgctccatcaatcattgagattcctggatta
cctttttgacctgctagaatgtcactgttagaaaaattttggcagttgta
ttgcgccatctagtggctcattatttgtaaaaaaacaaagtacaaaactt
ggtgttttattatttataaaagaatagataacgatcgttttgatttcata
cacattaaaaattagggtaatcaaattttaaaattgtttactatttcact
taattagcccagaaatacattaggtttgtttaactagcttacaatcagtc
tcttttattgataaaactaaagttctcaagatgaatttaaactctgcaac
acatatttctcactaatcaaaaactttaaataatactattcagaagtgag
gtgatagtgctataaaatatacatgcgttgaaaggtgtaaattcttacaa
aatacacagtgagcatataattaactacaaataaatattttaggaaaata
gcatattttagcatatatttcattatggtgatttcataacaattttctct
ttattaagttcaggaacatgatacttgttaatcttctgtaattacctgat
gaattcccttttagttatcagcgtttcaatctcaatatggaacatttata
tgtgtttactagttaataccattgattgagaagttcacactatgaagtac
tgtgctgatggaagatatatttgttaaggatgttgggtggggaaaatatg
ggaagaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70188937_70190099
seq2: B6Ng01-231H11.b_45_1211

seq1  GGAATTCGCCTTTTAGAAAGTTCTGCTTTTCTCAGTAGGGAGACTGACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCGCCTTTTAGAAAGTTCTGCTTTTCTCAGTAGGGAGACTGACTA  50

seq1  CGGTTCAGACATAGCACAAAAGTAAATAATTTAGAAGTTTGTTAATCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCAGACATAGCACAAAAGTAAATAATTTAGAAGTTTGTTAATCATC  100

seq1  CTTCAAATTTGAATGATATACAATAGTGACTAGTAGTTTTTGCGGGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATTTGAATGATATACAATAGTGACTAGTAGTTTTTGCGGGAAGA  150

seq1  AGGCATTTTGATAAATTATAGAATATTTAATGACTGAAACTAAACTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATTTTGATAAATTATAGAATATTTAATGACTGAAACTAAACTTCTT  200

seq1  CCTTCAGCCTACCTTTAGCTAGTTATCATTTGAAAAGTATGAATCAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGCCTACCTTTAGCTAGTTATCATTTGAAAAGTATGAATCAATAT  250

seq1  TTGCTAGACAGAAACAAAATGCCACATAGCTTATCAAGCGAGCCTTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGACAGAAACAAAATGCCACATAGCTTATCAAGCGAGCCTTGTTT  300

seq1  CCATAGCTTATCAAAACCCGGAACATGTTCGAGGTTGCTACGTTTTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTTATCAAAACCCGGAACATGTTCGAGGTTGCTACGTTTTCTAC  350

seq1  TATTAATGGTTCTATAAATATTTTATTCACATCTACTGTCTGTACTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATGGTTCTATAAATATTTTATTCACATCTACTGTCTGTACTCTAT  400

seq1  ATTACCGGGGATCTGTCTATCTTCTGTGGTGTACATTGTATACATCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGGGGATCTGTCTATCTTCTGTGGTGTACATTGTATACATCTCAG  450

seq1  GGTCTGTCTTCTAAAATGTATACTCTCTATATCCCCAGAGTCTGTCTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTTCTAAAATGTATACTCTCTATATCCCCAGAGTCTGTCTTCT  500

seq1  AAAGTGTATACTCTATATCCCCAGGGTCTGTCTTCTAAAGTGTATACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTATACTCTATATCCCCAGGGTCTGTCTTCTAAAGTGTATACTCT  550

seq1  CTATATCCCCAGGGTCTGTCTTCTAAAGTGTATACTCTTTATATCCCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCCAGGGTCTGTCTTCTAAAGTGTATACTCTTTATATCCCCAG  600

seq1  GGTCTGTCTTCTAAAGTGTATACTCTCTATATCCCCAGGATCTGTGTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTCTTCTAAAGTGTATACTCTCTATATCCCCAGGATCTGTGTTCT  650

seq1  GCAGTGTCAGTAGTTGTAGGAAGTGAGAGGCAAACATTATCTCTTCAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTCAGTAGTTGTAGGAAGTGAGAGGCAAACATTATCTCTTCAATA  700

seq1  TGGCCATGGAAAACTAATACTGAAAGGTCCTTCAAGTAGATTTTATAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCATGGAAAACTAATACTGAAAGGTCCTTCAAGTAGATTTTATAAAC  750

seq1  AGTGTGCCCAAAGGCATTACTTTATCAAGAAGGTATCCATTGGCTTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCCCAAAGGCATTACTTTATCAAGAAGGTATCCATTGGCTTTTTG  800

seq1  AATGGCTGTTAGAATTCTGACCCATAACAAATCATGAATGGACCCTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCTGTTAGAATTCTGACCCATAACAAATCATGAATGGACCCTTAAG  850

seq1  CAGGTGTCTAGCTGCTCACAGCCCTATCTTGCTGCTGGTGAACCAAAGGA  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGGTGTCTAGCTGCTCACAGCCCTATCTTGCTGCTGGTGAACC-AAGGA  899

seq1  GAGAGCACAATAAGGTTGAAGCAACCTTGACTACTCCACAGTCAAGTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCACAATAAGGTTGAAGCAACCTTGACTACTCCACAGTCAAGTTGT  949

seq1  GTGCTTTCTCCTATTATACATCAATGCTTCAGAGCAATCAGCATTATGAT  1000
      |||||||||| |||||||||||||||||||||||||||||||| ||||||
seq2  GTGCTTTCTCTTATTATACATCAATGCTTCAGAGCAATCAGCA-TATGAT  998

seq1  CCCCAATTCTGG-CCTTTTGAGAAGTAAGTCTGGAAGAAAGTTGTCAAGC  1049
      ||| |||||||| ||||||||||||||||||||||||||||||||| |||
seq2  CCCAAATTCTGGCCCTTTTGAGAAGTAAGTCTGGAAGAAAGTTGTC-AGC  1047

seq1  CACACCCTTAGGGGTTGTGTGCCCAGTCAGCAGTGGC-TCTAT-GTG-TC  1096
      |||||||||  |||||||||||||||||||||||||| | ||| ||| ||
seq2  CACACCCTTTAGGGTTGTGTGCCCAGTCAGCAGTGGCTTTTATGGTGTTC  1097

seq1  ACCACAGCCATGATC-ATTCCATGTTTCCCAATTATTCCCTACT-ATGCT  1144
      ||||||| ||||||| |||| ||||||||||| || |||||||| |||||
seq2  ACCACAG-CATGATCAATTCAATGTTTCCCAA-TAATCCCTACTAATGCT  1145

seq1  -GAG-TATTTTATTT-GAAAGA  1163
       ||| |||||||||| ||||||
seq2  GGAGATATTTTATTTGGAAAGA  1167


seq1: chr18_70352923_70353878
seq2: B6Ng01-231H11.g_64_1023 (reverse)

seq1  CAGTTC-TCCCATATTT--CCCA-CCAACATCCTTAACAAATATATCTTC  46
      |||||| ||||||||||  |||| ||||||||||||||||||||||||||
seq2  CAGTTCTTCCCATATTTTCCCCACCCAACATCCTTAACAAATATATCTTC  50

seq1  CATCAGCACAGTACTTCATAGTGTGAACTTCTCAATCAATGGTATTAACT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGCACAGTACTTCATAGTGTGAACTTCTCAATCAATGGTATTAACT  100

seq1  AGTAAACACATATAAATGTTCCATATTGAGATTGAAACGCTGATAACTAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACACATATAAATGTTCCATATTGAGATTGAAACGCTGATAACTAA  150

seq1  AAGGGAATTCATCAGGTAATTACAGAAGATTAACAAGTATCATGTTCCTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATTCATCAGGTAATTACAGAAGATTAACAAGTATCATGTTCCTG  200

seq1  AACTTAATAAAGAGAAAATTGTTATGAAATCACCATAATGAAATATATGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATAAAGAGAAAATTGTTATGAAATCACCATAATGAAATATATGC  250

seq1  TAAAATATGCTATTTTCCTAAAATATTTATTTGTAGTTAATTATATGCTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGCTATTTTCCTAAAATATTTATTTGTAGTTAATTATATGCTC  300

seq1  ACTGTGTATTTTGTAAGAATTTACACCTTTCAACGCATGTATATTTTATA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTATTTTGTAAGAATTTACACCTTTCAACGCATGTATATTTTATA  350

seq1  GCACTATCACCTCACTTCTGAATAGTATTATTTAAAGTTTTTGATTAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATCACCTCACTTCTGAATAGTATTATTTAAAGTTTTTGATTAGTG  400

seq1  AGAAATATGTGTTGCAGAGTTTAAATTCATCTTGAGAACTTTAGTTTTAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATATGTGTTGCAGAGTTTAAATTCATCTTGAGAACTTTAGTTTTAT  450

seq1  CAATAAAAGAGACTGATTGTAAGCTAGTTAAACAAACCTAATGTATTTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAGAGACTGATTGTAAGCTAGTTAAACAAACCTAATGTATTTCT  500

seq1  GGGCTAATTAAGTGAAATAGTAAACAATTTTAAAATTTGATTACCCTAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAATTAAGTGAAATAGTAAACAATTTTAAAATTTGATTACCCTAAT  550

seq1  TTTTAATGTGTATGAAATCAAAACGATCGTTATCTATTCTTTTATAAATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTGTATGAAATCAAAACGATCGTTATCTATTCTTTTATAAATA  600

seq1  ATAAAACACCAAGTTTTGTACTTTGTTTTTTTACAAATAATGAGCCACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACCAAGTTTTGTACTTTGTTTTTTTACAAATAATGAGCCACTA  650

seq1  GATGGCGCAATACAACTGCCAAAATTTTTCTAACAGTGACATTCTAGCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCGCAATACAACTGCCAAAATTTTTCTAACAGTGACATTCTAGCAG  700

seq1  GTCAAAAAGGTAATCCAGGAATCTCAATGATTGATGGAGCAACTGTCCTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAGGTAATCCAGGAATCTCAATGATTGATGGAGCAACTGTCCTA  750

seq1  GGCAGACACATGTCACCAAGTCTCTAAAGACAATATGTAAAACATGTCTG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACACATGTCACCAAGTCTCTAAAGACAATATGTAAAACATGTCTG  800

seq1  GGCAGCTGTCTGCTGTCTATGTACAGGACAAGCAGCTAGATCTGAACACA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTGTCTGCTGTCTATGTACAGGACAAGCAGCTAGATCTGAACACA  850

seq1  ACTAGGAAAGATGTAAATGAGCCTTGTGATTATATGTGACTAATTTGAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGAAAGATGTAAATGAGCCTTGTGATTATATGTGACTAATTTGAAT  900

seq1  GCCACTTAGAATCTACTATCTGACTGAGGTCCAGGGTGTCTACCTATGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTTAGAATCTACTATCTGACTGAGGTCCAGGGTGTCTACCTATGTA  950

seq1  TGAAGAATTC  956
      ||||||||||
seq2  TGAAGAATTC  960


| Home | SequenceCutter | Blast | Download |