MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-233I21
Chromosome	18 (Build37)
Map Location	62,534,782 - 62,681,556
singlet/doublet	doublet
Overlap gene	Htr4, Fbxo38
Upstream gene	Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2
Downstream gene	Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ppargc1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170826 MGI:2444934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667675 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667675
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	4933429F08Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328967 MGI:3045339
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Csnk1a1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93687 MGI:1934950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Il17b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56069 MGI:1928397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pcyox1l (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:240334 MGI:3606062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042730 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Grpel2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17714 MGI:1334416
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afap1l1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106877 MGI:2147199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042738 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042738
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Ablim3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319713 MGI:2442582
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sh3tc2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225608 MGI:2444417
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Adrb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11555 MGI:87938
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15562 MGI:109246
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Fbxo38 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107035 MGI:2444639
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spink10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:328971 MGI:3584533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG408198 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:408198 MGI:3644691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2700046A07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78449 MGI:1919803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs

name	Apcdd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:494504 MGI:3513977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Napg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108123 MGI:104561
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9430028L06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225617 MGI:2442541
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9030411M15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667742 MGI:1918781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Ppargc1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131021 GeneID:170826 MGI:2444934
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : peroxisome proliferative activated receptor, gamma, coactivator 1 beta transcript_id : NM_133249.2

name	4933429F08Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142387990 GeneID:328967 MGI:3045339
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4933429F08 gene transcript_id : NM_177828.3

name	Csnk1a1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130247 GeneID:93687 MGI:1934950
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : casein kinase 1, alpha 1 transcript_id : NM_146087.2

name	Il17b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9507246 GeneID:56069 MGI:1928397
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : interleukin 17B transcript_id : NM_019508.1

name	Pcyox1l (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142343997 GeneID:240334 MGI:3606062
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : prenylcysteine oxidase 1 like transcript_id : NM_172832.2

name	LOC100042730 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149269790 GeneID:100042730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042730 transcript_id : XM_001478705.1

name	Grpel2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87196330 GeneID:17714 MGI:1334416
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GrpE-like 2, mitochondrial transcript_id : NM_021296.2

name	Afap1l1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130646 GeneID:106877 MGI:2147199
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin filament associated protein 1-like 1 transcript_id : NM_178928.4

name	Ablim3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62990179 GeneID:319713 MGI:2442582
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : actin binding LIM protein family, member 3 transcript_id : NM_198649.2

name	Sh3tc2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:100817512 GeneID:225608 MGI:2444417
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SH3 domain and tetratricopeptide repeats 2 transcript_id : NM_172628.2

name	Adrb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328091 GeneID:11555 MGI:87938
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adrenergic receptor, beta 2 transcript_id : NM_007420.2

name	Htr4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802411 GeneID:15562 MGI:109246
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5 hydroxytryptamine (serotonin) receptor 4 transcript_id : NM_008313.3

name	Fbxo38 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803457 GeneID:107035 MGI:2444639
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : F-box protein 38 transcript_id : NM_134136.2

name	Spink10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114842413 GeneID:328971 MGI:3584533
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine peptidase inhibitor, Kazal type 10 transcript_id : NM_177829.3

name	2700046A07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269858 GeneID:78449 MGI:1919803
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 6 ESTs product : RIKEN cDNA 2700046A07 gene transcript_id : XM_001002365.2

name	Apcdd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385643 GeneID:494504 MGI:3513977
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : adenomatosis polyposis coli down-regulated 1 transcript_id : NM_133237.3

name	Napg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625901 GeneID:108123 MGI:104561
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : N-ethylmaleimide sensitive fusion protein attachment protein gamma transcript_id : NM_028017.1

name	9430028L06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87116665 GeneID:225617 MGI:2442541
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9430028L06 gene transcript_id : NM_001039485.1

name	9030411M15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269799 GeneID:667742 MGI:1918781
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : RIKEN cDNA 9030411M15 gene transcript_id : XM_001478778.1

name	Ppargc1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18875426 CCDS:CCDS29284.1 GeneID:170826 MGI:2444934
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0050682 - AF-2 domain binding [Evidence ISS]; GO:0030374 - ligand-dependent nuclear receptor transcription coactivator activity [Evidence ISS]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence ISS] [Evidence IEA] GO_process : GO:0030520 - estrogen receptor signaling pathway [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : PPAR gamma coactivator-1beta protein; PGC-1beta/ERRL1 product : peroxisome proliferator-activated receptor gamma coactivator 1 beta protein_id : NP_573512.1

name	4933429F08Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244390 GeneID:328967 MGI:3045339
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA] codon_start : 1 product : hypothetical protein LOC328967 protein_id : NP_808496.1

name	Csnk1a1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22165382 GeneID:93687 MGI:1934950
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 note : casein kinase I-alpha product : casein kinase 1, alpha 1 protein_id : NP_666199.1

name	Il17b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9507247 CCDS:CCDS29286.1 GeneID:56069 MGI:1928397
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005125 - cytokine activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS]; GO:0005102 - receptor binding [Evidence ISS] GO_process : GO:0006954 - inflammatory response [Evidence IEA]; GO:0030593 - neutrophil chemotaxis [Evidence ISS] codon_start : 1 note : gene for cytokine-like protein product : interleukin 17b protein_id : NP_062381.1

name	Pcyox1l (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27370248 CCDS:CCDS29287.1 GeneID:240334 MGI:3606062
definition	GO_function : GO:0016491 - oxidoreductase activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : prenylcysteine oxidase 1 like protein_id : NP_766420.1

name	LOC100042730 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149269791 GeneID:100042730
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478755.1

name	Grpel2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789124 CCDS:CCDS29288.1 GeneID:17714 MGI:1334416
definition	GO_component : GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IDA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006457 - protein folding [Evidence IEA] codon_start : 1 product : GrpE-like 2, mitochondrial protein_id : NP_067271.1

name	Afap1l1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982370 GeneID:106877 MGI:2147199
definition	codon_start : 1 product : actin filament associated protein 1-like 1 protein_id : NP_849259.2

name	Ablim3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62990180 GeneID:319713 MGI:2442582
definition	GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] codon_start : 1 product : actin binding LIM protein family, member 3 protein_id : NP_941051.2

name	Sh3tc2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:100817513 GeneID:225608 MGI:2444417
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 product : SH3 domain and tetratricopeptide repeats 2 protein_id : NP_766216.2

name	Adrb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328092 CCDS:CCDS29289.1 GeneID:11555 MGI:87938
definition	GO_component : GO:0016324 - apical plasma membrane [Evidence IDA]; GO:0005887 - integral to plasma membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence ISS]; GO:0043235 - receptor complex [Evidence ISS] GO_function : GO:0004941 - beta2-adrenergic receptor activity [Evidence IDA]; GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0051380 - norepinephrine binding [Evidence ISS]; GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007190 - adenylate cyclase activation [Evidence ISS]; GO:0002032 - arrestin mediated desensitization of G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0045453 - bone resorption [Evidence IMP]; GO:0050873 - brown fat cell differentiation [Evidence IGI]; GO:0002024 - diet induced thermogenesis [Evidence IGI]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IMP] [Evidence IDA]; GO:0031649 - heat generation [Evidence IGI]; GO:0040015 - negative regulation of body size [Evidence IGI]; GO:0045986 - negative regulation of smooth muscle contraction [Evidence IGI]; GO:0001993 - norepinephrine-epinephrine regulation of blood pressure [Evidence IMP]; GO:0002025 - norepinephrine-epinephrine vasodilation during regulation of blood pressure [Evidence IMP] [Evidence IGI]; GO:0030501 - positive regulation of bone mineralization [Evidence IMP]; GO:0043410 - positive regulation of MAPKKK cascade [Evidence ISS]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006898 - receptor mediated endocytosis [Evidence ISS]; GO:0002028 - regulation of sodium ion transport [Evidence IMP]; GO:0009409 - response to cold [Evidence IGI]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : beta 2-AR; beta 2-adrenoceptor; beta-2 adrenergic receptor product : adrenergic receptor, beta 2 protein_id : NP_031446.2

name	Htr4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370240 CCDS:CCDS29291.1 GeneID:15562 MGI:109246
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence ISS] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004993 - serotonin receptor activity [Evidence ISS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : serotonin product : serotonin 5-HT4 receptor protein_id : NP_032339.2

name	Fbxo38 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789361 GeneID:107035 MGI:2444639
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : F-box protein modulating KLF7 activity product : MoKA protein_id : NP_598897.1

name	Spink10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244400 CCDS:CCDS29293.1 GeneID:328971 MGI:3584533
definition	GO_function : GO:0008233 - peptidase activity [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] codon_start : 1 product : serine protease inhibitor Kazal type 10 protein_id : NP_808497.1

name	2700046A07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94404471 GeneID:78449 MGI:1919803
definition	codon_start : 1 product : hypothetical protein LOC78449 protein_id : XP_001002365.1

name	Apcdd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625864 GeneID:494504 MGI:3513977
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : ethanol induced gene product EIG180 product : adenomatosis polyposis coli down-regulated 1 protein_id : NP_573500.2

name	Napg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625902 CCDS:CCDS29295.1 GeneID:108123 MGI:104561
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005794 - Golgi apparatus [Evidence IEA] GO_function : GO:0005488 - binding [Evidence IEA]; GO:0005478 - intracellular transporter activity [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence IEA]; GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : N-ethylmaleimide sensitive fusion protein attachment protein gamma protein_id : NP_082293.1

name	9430028L06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:87116666 CCDS:CCDS29296.1 GeneID:225617 MGI:2442541
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC225617 protein_id : NP_001034574.1

name	9030411M15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269800 GeneID:667742 MGI:1918781
definition	codon_start : 1 product : hypothetical protein LOC71531 protein_id : XP_001478828.1

name	LOC667675 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667675
definition	number : 1 pseudo : _no_value

name	LOC100042738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042738
definition	number : 2 pseudo : _no_value

name	LOC100042738 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042738
definition	number : 1 pseudo : _no_value

name	EG408198 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149269601 GeneID:408198 MGI:3644691
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, EG408198 transcript_id : XR_035113.1

clone name	MSMg01-191J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325O24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-407E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-135D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-372G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-235O22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158P21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-177J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-331F15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-280O14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-273H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-536G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-401M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-203N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209J01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210C07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-191K21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448M07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-268C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-171M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377J18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-524D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-295H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532C05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431B12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-142C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053O06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-545H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-339D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-341E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-337C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321G18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-201E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-392D18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141I11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-237D09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-507G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-292B13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-227C19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-208F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094B11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093K11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-121L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115C13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233I21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073G02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079K13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205L14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257D15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233I05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207E17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-193G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123B14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131O10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-021B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045I02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-073K21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-292L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104N23
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-233I21.b	B6Ng01-233I21.g
ACC	GA045576	GA045577
length	1,167	981
definition	B6Ng01-233I21.b	B6Ng01-233I21.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(62,680,392 - 62,681,556)	(62,534,782 - 62,535,734)
sequence	gaattccatacttgacctttttccttatggcacaagttcatgttctctaa gagtaatgatgtttatagccgttgactgtctgtgctcacaaggctttaag tagattagcaatttgaggataagtttcttgtgatgcctacgttaaccaca ccaagacccttgcacttcttactgaggccttggcctctgctgtcagagcc attgccacgatctgcacctcactgcagagtcactcgcaggactgttcagt gctctcgagcctcttctgagatggcgtgtgccacagggactatacctcac ctatcagtggcccacatgttactggaaattaggaattttagtatacagca ggtatagatcactttaaaaaataacatttattgggtttttggtttgtttt tcttaaatacagaagagtataaagaagaaaacaaaaaatggcttataatc ccatcattcagaactcctgttaacacttaaattaaagtaatacatgcact tgataaatttcagacagtgcagaaaggtacaaaatgaaagtctcctcttc tcaaggtaaccatcatcaacagtttcttatatattcttctggacaaatga ctttgtgcatattacatcctatgcatttatagcatttaaagtgatttata gacagacagatcttctgtgtgtacaccgtcctgtgccttatttttcgtac taagtatgtttgggagagctgtccatctcagtaagcatatagttcttctc attctgtcaaagtaggtgcatctgtttgactaagtgaatgtgccatgctt gctttacccagtgtcctgttgcttaaaggcatgaaggctgatgaagggat gacatgtgactcagggccacctcagtctcacttcagtgtctcctgtgcca tgtatttctcacagtgaaattaactatggcagcagcatagtagggaatca tcaagcctgaaagtccaggaagccagcaagttactcagaagaacaaggat tgcaaggaaagtcttttgtgatggtgctgcaaaacctcaccagttgctga gatgttctgtttatgtcactttcaacagaccactcgaggtggatgcgact ggttgaattcacctcgtgcgggggccaatgccttgaagcttgaattcttt gccagtttgtttgaatt	gaattcctgtggcctgcagaatacagcaacaaacaaggcaggaaggtctt ctgtcctcctgaagagtagcaacaattatgtgagactataaagcataatc tagtagcttgtatgaactacgaaggaggagggggcagcagaaaaacaaag atgaaggacaatcatgactgtccagtgcaaaactcagtagcctgaaacag gattgcccagccgaaggaataaaatcaaggtcacactctgaggaccatag ctgggtgacagcgggtatatgaaatgaggggaacatggagatcggcctcc gaactcagagagaggcacacactcttaactctaggcatgatgagaactgc ggttgttagagtctggtaaagaaggggtcagttttctctaagagtgtagc ccaagactatttcaggcaccacaattacccttgaaggtatttttttcttc ttggttttgctttgttttgtttgtaaatgatacaaaattgggtagataag gaagaggggtggatgtgataaggtgaatctggccagaattgggaaggtga atataatcaaaatacattgtttgaaaattgaagctctcagtcctgaaaac atatgtatgtgtaacattatactggctaaacaggttatatttagaagtat atacatacctatacatataaattagtgaaaaacaaggccaaaatttgaat tactgtggggaggtgtatatgaaaaggtttggagggaagaaagtgaaggg agaaatgttgtaactctattataatctcaagagcaaaatgaataaaaaaa taagaaaaatgaatgagtattcttgaatatatgaatgaatgaaaacattt tgcctaaaggactagaataaacatttctctaaaattgaaaaagtgcataa atagccagtgggcatagtaaaatatgctcatattctttaattaaaaacgg aaatgagtctaaaccatcgtttagaagccgg
quality values	Open. Hide. 58 33 22 25 58 58 35 18 58 58 58 58 62 62 47 47 62 62 62 62 62 62 62 62 62 54 62 54 62 54 56 51 51 44 27 38 56 56 31 43 44 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 59 59 59 62 62 62 62 62 59 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 54 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 49 54 62 62 62 62 62 62 54 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 59 59 62 59 62 54 62 62 62 62 59 62 62 59 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 59 35 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 62 62 62 62 62 62 62 62 62 58 54 54 58 58 54 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 54 49 54 54 58 58 54 58 58 58 58 54 58 52 54 58 54 58 58 58 52 58 58 54 58 58 54 52 58 54 58 58 58 54 58 58 58 58 54 54 52 58 58 58 54 54 58 54 54 52 51 50 50 49 58 50 51 51 48 51 52 58 58 51 58 58 50 58 51 53 58 58 58 51 52 51 51 52 53 52 53 49 45 54 58 51 54 51 54 58 49 48 33 50 58 58 41 58 51 40 58 58 58 58 53 58 52 46 51 53 47 43 50 51 49 58 58 58 52 53 53 54 48 42 50 58 44 46 42 51 51 52 50 49 58 48 50 58 49 49 54 58 38 25 58 40 52 52 52 53 51 42 35 53 58 50 53 53 39 41 50 53 53 50 52 54 51 58 54 53 50 31 52 38 49 58 53 39 58 50 50 58 54 54 54 50 40 35 42 35 38 51 54 41 49 42 32 37 37 39 53 49 41 52 40 35 38 29 54 49 54 54 45 53 31 54 31 39 39 47 32 21 29 29 45 42 45 37 37 31 42 39 51 37 40 37 40 37 40 42 40 53 40 42 37 53 37 42 37 33 32 31 40 40 51 27 37 25 54 46 32 32 34 14 28 24 31 25 32 40 32 32 38 26 51 51 28 31 26 40 26 53 29 31 32 32 32 31 52 32 32 31 32 23 32 52 32 45 37 43 33 26 49 30 28 26 41 32 28 31 26 41 30 31 31 31 51 35 34 43 39 33 33 28 51 33 31 32 17 25 31 31 34 42 18 32 23 31 31 30 14 23 27 43 19 47 31 14 13 31 31 18 29 36 31 31 31 31 26 38 33 11 19 46 25 33 29 23 36 33 31 30 30 33 32 36 34 31 33 32 21 37 30 27 33 31 36 29 32 29 21 28 24 32 23 32 20 27 20 32 42 22 35 27 47 32 31 25 26 18 31 32 21 33 36 36 48 25 17 21 18 27 31 32 34 31 17 23 21 32 27 38 21 19 31 24 32 31 19 33 23 25 48 11 26 23 25 31 28 35 32 17 25 31 22 25 32 32 22 39 26 8 21 23 23 27 24 14 29 32 22 20 20 19 25 24 19 23 32 21 23 13 22 32 25 13 8 8 22 10 14 27 10 11 23 9 20 15 10 16 21 24 14 25 18 16 16 40 20 20 24 24 24 32 38 19 20 16 23 27 9 8 3 3 16 17 20 26 24 26 28 30 13 14 18 13 11 12 15 13 7 6 15 10 26 13 25 7 5 5 5 8 10 9 18 12 8 17 9 28 6 6 5 6 7 6 5 15 25 38 28 18 19 7 9 4 7 21 9 9 4 9 6 9 3 3 8 23 12 28 15 25 8 5 14 5 7 10 10 25 24 7 8 6 16 6 4 10 6 7 6 10 16 10 5 5 22 15 8 18 7 12 7 11 11 6 7 16 19 8 8 18 22 8 5 13 5 10 7 5 20 4 5 16 10 16 5 26 5 3 2 7 6 3 3 5 5 12 5 6 12 13 10 17 3 4	Open. Hide. 58 36 47 42 62 62 46 62 62 62 49 62 46 56 40 32 20 19 20 28 56 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 44 56 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 59 62 59 62 62 62 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 59 62 59 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 47 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 42 62 62 62 62 62 62 54 54 62 62 62 62 54 48 62 62 62 51 62 62 52 54 58 58 58 58 54 54 50 49 58 34 47 58 58 58 58 58 58 50 58 32 58 58 58 54 52 54 58 58 54 58 50 58 58 58 52 54 54 50 58 58 58 49 58 54 58 58 58 58 41 38 58 54 58 58 52 54 58 52 54 54 52 50 52 54 58 52 58 58 43 49 48 52 52 58 54 58 58 50 50 58 49 53 58 49 47 47 50 46 54 51 50 51 50 54 52 58 51 50 46 53 53 51 47 42 41 58 46 50 52 41 40 51 58 58 52 51 51 49 46 53 33 49 53 54 37 51 32 54 37 54 50 50 53 51 39 54 36 58 53 58 40 58 46 51 52 50 52 54 49 40 58 54 44 29 40 39 35 29 58 31 50 28 51 58 32 39 58 53 50 39 53 42 42 32 42 50 58 39 40 54 54 54 39 29 54 33 53 31 29 33 29 45 41 49 54 54 50 19 26 17 54 33 41 51 31 13 54 40 42 51 24 54 54 44 28 37 52 31 14 6 35 27 40 25 33 49 28 30 47 13 13 37 31 16 28 23 24 32 20 17 21 28 20 11 12 24 35 32 36 33 22 18 33 53 15 31 13 34 37 18 32 19 14 21 14 11 9 9 9 8 45 30 27 9 15 15 29 23 32 32 8 8 29 27 27 43 28 42 24 39 31 31 18 23 9 10 31 30 16 30 20 26 23 30 32 29 33 30 32 32 31 31 18 9 21 28 18 21 11 18 26 12 22 27 13 17 26 16 14 6 15 16 30 31 38 13 13 29 27 28 29 46 18 18 12 21 18 7 16 12 23 24 30 23 31 18 18 32 30 24 30 32 28 37 13 30 25 24 8 24 6 18 20 18 19 9 8 22 21 11 11 29 39 27 30 6 9 8 5 7 27 23 41 30 18 13 9 22 31 31 20 31 30 8 6 28 27 11 32 6 11 14 32 9 26 24 36 8 7 7 38 19 38 33 22 26 11 29 15 22 10 6 31 13 17 13 7 15 10 27 10 29 32 21 16 7 23 14 33 10 18 11 24

Alignment Information

BAC End 1

BAC End 2

seq1: chr18_62680392_62681556
seq2: B6Ng01-233I21.b_45_1211 (reverse)

seq1  AATTC-AACAAACTGGCCAAAAGAA-TCCAGCTTCAAAGCAT--GGCACC  46
      ||||| |||||||||||  |||||| || |||||||| ||||  | | ||
seq2  AATTCAAACAAACTGGC--AAAGAATTCAAGCTTCAAGGCATTGGCCCCC  48

seq1  GCACGAGGTTGATATCAACCAGTCGCATCCACCTCGAGTGGTCTGTTGAA  96
      |||||||| |||  ||||||||||||||||||||||||||||||||||||
seq2  GCACGAGG-TGAATTCAACCAGTCGCATCCACCTCGAGTGGTCTGTTGAA  97

seq1  AGTGACAT-AACAGAACATCCTCAAGCAACTGGTGAGGTTTTGCAGCA-C  144
      |||||||| |||||||||| ||| |||||||||||||||||||||||| |
seq2  AGTGACATAAACAGAACAT-CTC-AGCAACTGGTGAGGTTTTGCAGCACC  145

seq1  ATCACAAAAGACTTTCCTTGCAATCCTTGTTC-TCTGAGTAACTTGCTGG  193
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCACAAAAGACTTTCCTTGCAATCCTTGTTCTTCTGAGTAACTTGCTGG  195

seq1  CTTCCTGGACTTTCAGGCTTGATGATTCCCTACTATGCTGCTGCCATAGT  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGACTTTCAGGCTTGATGATTCCCTACTATGCTGCTGCCATAGT  245

seq1  TAATTTCACTGTGAGAAATACATGGCACAGGAGACACTGAAGTGAGACTG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCACTGTGAGAAATACATGGCACAGGAGACACTGAAGTGAGACTG  295

seq1  AGGTGGCCCTGAGTCACATGTCATCCCTTCATCAGCCTTCATGCCTTTAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCCTGAGTCACATGTCATCCCTTCATCAGCCTTCATGCCTTTAA  345

seq1  GCAACAGGACACTGGGTAAAGCAAGCATGGCACATTCACTTAGTCAAACA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGGACACTGGGTAAAGCAAGCATGGCACATTCACTTAGTCAAACA  395

seq1  GATGCACCTACTTTGACAGAATGAGAAGAACTATATGCTTACTGAGATGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACCTACTTTGACAGAATGAGAAGAACTATATGCTTACTGAGATGG  445

seq1  ACAGCTCTCCCAAACATACTTAGTACGAAAAATAAGGCACAGGACGGTGT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCTCCCAAACATACTTAGTACGAAAAATAAGGCACAGGACGGTGT  495

seq1  ACACACAGAAGATCTGTCTGTCTATAAATCACTTTAAATGCTATAAATGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGAAGATCTGTCTGTCTATAAATCACTTTAAATGCTATAAATGC  545

seq1  ATAGGATGTAATATGCACAAAGTCATTTGTCCAGAAGAATATATAAGAAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGATGTAATATGCACAAAGTCATTTGTCCAGAAGAATATATAAGAAA  595

seq1  CTGTTGATGATGGTTACCTTGAGAAGAGGAGACTTTCATTTTGTACCTTT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATGATGGTTACCTTGAGAAGAGGAGACTTTCATTTTGTACCTTT  645

seq1  CTGCACTGTCTGAAATTTATCAAGTGCATGTATTACTTTAATTTAAGTGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTGTCTGAAATTTATCAAGTGCATGTATTACTTTAATTTAAGTGT  695

seq1  TAACAGGAGTTCTGAATGATGGGATTATAAGCCATTTTTTGTTTTCTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGAGTTCTGAATGATGGGATTATAAGCCATTTTTTGTTTTCTTCT  745

seq1  TTATACTCTTCTGTATTTAAGAAAAACAAACCAAAAACCCAATAAATGTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCTTCTGTATTTAAGAAAAACAAACCAAAAACCCAATAAATGTT  795

seq1  ATTTTTTAAAGTGATCTATACCTGCTGTATACTAAAATTCCTAATTTCCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAAAGTGATCTATACCTGCTGTATACTAAAATTCCTAATTTCCA  845

seq1  GTAACATGTGGGCCACTGATAGGTGAGGTATAGTCCCTGTGGCACACGCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATGTGGGCCACTGATAGGTGAGGTATAGTCCCTGTGGCACACGCC  895

seq1  ATCTCAGAAGAGGCTCGAGAGCACTGAACAGTCCTGCGAGTGACTCTGCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGAAGAGGCTCGAGAGCACTGAACAGTCCTGCGAGTGACTCTGCA  945

seq1  GTGAGGTGCAGATCGTGGCAATGGCTCTGACAGCAGAGGCCAAGGCCTCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGTGCAGATCGTGGCAATGGCTCTGACAGCAGAGGCCAAGGCCTCA  995

seq1  GTAAGAAGTGCAAGGGTCTTGGTGTGGTTAACGTAGGCATCACAAGAAAC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAGTGCAAGGGTCTTGGTGTGGTTAACGTAGGCATCACAAGAAAC  1045

seq1  TTATCCTCAAATTGCTAATCTACTTAAAGCCTTGTGAGCACAGACAGTCA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCAAATTGCTAATCTACTTAAAGCCTTGTGAGCACAGACAGTCA  1095

seq1  ACGGCTATAAACATCATTACTCTTAGAGAACATGAACTTGTGCCATAAGG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCTATAAACATCATTACTCTTAGAGAACATGAACTTGTGCCATAAGG  1145

seq1  AAAAAGGTCAAGTATGGAATTC  1165
      ||||||||||||||||||||||
seq2  AAAAAGGTCAAGTATGGAATTC  1167

seq1: chr18_62534782_62535734
seq2: B6Ng01-233I21.g_68_1023

seq1  GAATTCCTGTGGCCTGCAGAATACAGCAACAAACAAGGCAGGAAGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGCCTGCAGAATACAGCAACAAACAAGGCAGGAAGGTCTT  50

seq1  CTGTCCTCCTGAAGAGTAGCAACAATTATGTGAGACTATAAAGCATAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCCTGAAGAGTAGCAACAATTATGTGAGACTATAAAGCATAATC  100

seq1  TAGTAGCTTGTATGAACTACGAAGGAGGAGGGGGCAGCAGAAAAACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTTGTATGAACTACGAAGGAGGAGGGGGCAGCAGAAAAACAAAG  150

seq1  ATGAAGGACAATCATGACTGTCCAGTGCAAAACTCAGTAGCCTGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGACAATCATGACTGTCCAGTGCAAAACTCAGTAGCCTGAAACAG  200

seq1  GATTGCCCAGCCGAAGGAATAAAATCAAGGTCACACTCTGAGGACCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCCAGCCGAAGGAATAAAATCAAGGTCACACTCTGAGGACCATAG  250

seq1  CTGGGTGACAGCGGGTATATGAAATGAGGGGAACATGGAGATCGGCCTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGACAGCGGGTATATGAAATGAGGGGAACATGGAGATCGGCCTCC  300

seq1  GAACTCAGAGAGAGGCACACACTCTTAACTCTAGGCATGATGAGAACTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAGAGAGGCACACACTCTTAACTCTAGGCATGATGAGAACTGC  350

seq1  GGTTGTTAGAGTCTGGTAAAGAAGGGGTCAGTTTTCTCTAAGAGTGTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTAGAGTCTGGTAAAGAAGGGGTCAGTTTTCTCTAAGAGTGTAGC  400

seq1  CCAAGACTATTTCAGGCACCACAATTACCCTTGAAGGTATTTTTTTCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGACTATTTCAGGCACCACAATTACCCTTGAAGGTATTTTTTTCTTC  450

seq1  TTGGTTTTGCTTTGTTTTGTTTGTAAATGATACAAAATTGGGTAGATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGCTTTGTTTTGTTTGTAAATGATACAAAATTGGGTAGATAAG  500

seq1  GAAGAGGGGTGGATGTGATAAGGTGAATCTGGCCAGAATTGGGAAGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGGTGGATGTGATAAGGTGAATCTGGCCAGAATTGGGAAGGTGA  550

seq1  ATATAATCAAAATACATTGTTTGAAAATTGAAGCTCTCAGTCCTGAAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATCAAAATACATTGTTTGAAAATTGAAGCTCTCAGTCCTGAAAAC  600

seq1  ATATGTATGTGTAACATTATACTGGCTAAACAGGTTATATTTAGAAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGTGTAACATTATACTGGCTAAACAGGTTATATTTAGAAGTAT  650

seq1  ATACATACCTATACATATAAATTAGTGAAAAACAAGGCCAAAATTTGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACCTATACATATAAATTAGTGAAAAACAAGGCCAAAATTTGAAT  700

seq1  TACTGTGGGGAGGTGTATATGAAAAGGTTTGGAGGGAAGAAAGTGAAGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGGAGGTGTATATGAAAAGGTTTGGAGGGAAGAAAGTGAAGGG  750

seq1  AGAAATGTTGTAACTCTATTATAATCTCAAGAGCAAAATGAATAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTTGTAACTCTATTATAATCTCAAGAGCAAAATGAATAAAAAAA  800

seq1  TAAGAAAAATGAATGAGTATTCATGAATATATGAATGAATGAAAACA-TT  849
      |||||||||||||||||||||| |||||||||||||||||||||||| ||
seq2  TAAGAAAAATGAATGAGTATTCTTGAATATATGAATGAATGAAAACATTT  850

seq1  TGCCTAAAGGACTAGAATAAACATTTCTCTAAAATTGAAAAAGTGCATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAAAGGACTAGAATAAACATTTCTCTAAAATTGAAAAAGTGCATAA  900

seq1  ATAGCCAGTGGGCATAGTAAAATATGCTCAATATCTTT-ATTAAAAA-GG  947
      ||||||||||||||||||||||||||||||   ||||| |||||||| ||
seq2  ATAGCCAGTGGGCATAGTAAAATATGCTCATATTCTTTAATTAAAAACGG  950

seq1  AAATGA  953
      ||||||
seq2  AAATGA  956

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information