BAC Information

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BAC

Clone NameB6Ng01-234N04
Chromosome18 (Build37)
Map Location 85,103,890 - 85,292,206
singlet/doubletdoublet
Overlap geneFbxo15, 1700034H14Rik, LOC100039765
Upstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5
Downstream geneLOC665382, LOC545269, LOC545270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234N04.bB6Ng01-234N04.g
ACCGA046470GA046471
length1,124897
definitionB6Ng01-234N04.b B6Ng01-234N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,291,188 - 85,292,206)(85,103,890 - 85,104,786)
sequence
gaattccaccaccaggaagctacagctcaaggtcatccttgccaaataaa
aaaattgaggctagcctcagatgaaagagtttatgtcaaaaaaaaaaaaa
aaggaaaatagtaaggaaggaagaagaagaaaggaaagaaagaggaaaaa
ggaaggagaaacaaaaaagaaacaaggaaagagacaaaaaagaagaaagg
gaaaaagaaagggactaaataggaaaagatttttaaaagaaaaagcatga
aaataaataaataaataacaactcttaatactacatcttgaattagacaa
tatggaggcatggataaaacggaaaggaatgatgacaggatttgattggg
tcagggtgtcagcagtatttctgaatgtaagtctggaagctcacatcatg
gaaaaaccaatggataaggataaacgttgatggaaaaatgcaacagtaac
tgaaatgcaacagatactgcagcggcctaaggattgagggaggagctggt
actatgcttggcaatcatctggtcaactaggggttaaggagctgtagaca
tatgataaaaacatgaaagactaaactaatcagtaaaatgcttgcactgc
tagtatgagaacacaggttaaatcaccagcatctacattaacacaacaaa
aaacaaaaatgctaagcaaagtgtatgtttgcaatctcgttcctgggagg
tggagacggattcattggattgacgagcccaaaccatcacaggctatggg
tactgtccttgatgctctacccccaccatctagaggtaaaaagtaaatac
ctattgctaaagacatcacaaatctcagaccctgagcctagaggccccaa
gcaggatttgatctgaaattgttctccctgtgcactgttttcatgggtac
cagaaagtgctctatacaagcttccagtggagggaagaaactaaaagttc
caccattaactatggtgtttatgaaccacaaactggtgaccagctttgtc
attacaaccaagaagtgccagtagttgctgagcacactttgggtggtaac
ccaccagcttctttaattagactttagaacctcagtcaacaaagggatcc
atgttccagtacctgaaaccagga
gaattcctaggggcttgttagataaactgttaaggtggaccaaccagcta
gctagtttggaaagaagtgtggatagctcaatgacaagaatccctggctg
ctaagcaaactgcctcaccctactttgaggacttgtaaggtgagtggcct
tgtaaagtctcatacttagggtctgagcaagggtggtgtaatggctattc
ttggttgtcaacttgactatgtctggaacgaacttcaggtcagaattgga
gggctcacctgtgatccagatcttgaggcttaaaaacacaagtttctgat
ctggatcttggcatggagatcttgaggcatagtggctatgaaaagcttag
ccccaggcaaggtagtacacgcctttaattccgggagactaaggcaagga
gatctctgagttcaaggtcagcctggaagagaactaatcccagatcaagg
tgtggttgtaacacctttaatctgggccctaacttctttaggagactata
taaggacatcttcgcctgcttccacttacttgcctgtccaagatctgttg
gaatctgcttctacagaagaccagctgaaacaaatagcttcgtgggactg
agcacaactactagattcttggacttccgttcacagctgccaattgttgg
gagtacaataatggaggagtcggaattggagatgtaagtcattataacaa
attcccttactgtattgagactatccataagtttttgtgactctagagaa
accctgactactactggtgggatcttttgacctaaatttttttaaatggt
tttagagctttattgtaaaaggacagggggaaaatgaagttagaaagagg
gaaagaggccagccatggccacgtggagagaggggggaagaagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85291188_85292206
seq2: B6Ng01-234N04.b_140_1171 (reverse)

seq1  TCCTGGGTTTCA-GTACTAG-ACATGGTTTCCCTTTGTTGACT--GGGTC  46
      |||| ||||||| ||||| | ||||||  ||||||||||||||  || ||
seq2  TCCT-GGTTTCAGGTACTGGAACATGG-ATCCCTTTGTTGACTGAGGTTC  48

seq1  TTAAGTCTAATTAAAG-AGCT-GTTGGTTACCA-CCAAAGTGTGCTCGGC  93
      | |||||||||||||| |||| || |||||||| ||||||||||||| ||
seq2  TAAAGTCTAATTAAAGAAGCTGGTGGGTTACCACCCAAAGTGTGCTCAGC  98

seq1  -ACTACT-GCAC-TCTTGGTTGTAATGAC-AAGCTCGTCA-CAG-TTGTG  137
       |||||| |||| |||||||||||||||| ||||| |||| ||| |||||
seq2  AACTACTGGCACTTCTTGGTTGTAATGACAAAGCTGGTCACCAGTTTGTG  148

seq1  GTTCATAAACACCATAGTTA--TGTGGAACTTTTAGTTTCTTCCCTCCAC  185
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  GTTCATAAACACCATAGTTAATGGTGGAACTTTTAGTTTCTTCCCTCCAC  198

seq1  TGGAAGCTTGTATAGAGCACCTTCTGGTA-CCATGAAAAACAGTGCACAG  234
      |||||||||||||||||||| |||||||| ||||| ||||||||||||||
seq2  TGGAAGCTTGTATAGAGCACTTTCTGGTACCCATG-AAAACAGTGCACAG  247

seq1  GGAGAACAATTTCAGATCAAATCCTGCTTGGGGCCTCTAGGCTCAGGGTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAATTTCAGATCAAATCCTGCTTGGGGCCTCTAGGCTCAGGGTC  297

seq1  TGAGATTTGTGATGTCTTTAGCAATAGGTATTTACTTTTTACCTCTAGAT  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTGTGATGTCTTTAGCAATAGGTATTTACTTTTTACCTCTAGAT  347

seq1  GGTGGGGGTAGAGCATCAAGGACAGTACCCATAGCCTGTGATGGTTTGGG  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTAGAGCATCAAGGACAGTACCCATAGCCTGTGATGGTTTGGG  397

seq1  CTCGTCAATCCAATGAATCCGTCTCCACCTCCCAGGAACGAGATTGCAAA  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCAATCCAATGAATCCGTCTCCACCTCCCAGGAACGAGATTGCAAA  447

seq1  CATACACTTTGCTTAGCATTTTTGTTTTTTGTTGTGTTAATGTAGATGCT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACTTTGCTTAGCATTTTTGTTTTTTGTTGTGTTAATGTAGATGCT  497

seq1  GGTGATTTAACCTGTGTTCTCATACTAGCAGTGCAAGCATTTTACTGATT  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATTTAACCTGTGTTCTCATACTAGCAGTGCAAGCATTTTACTGATT  547

seq1  AGTTTAGTCTTTCATGTTTTTATCATATGTCTACAGCTCCTTAACCCCTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGTCTTTCATGTTTTTATCATATGTCTACAGCTCCTTAACCCCTA  597

seq1  GTTGACCAGATGATTGCCAAGCATAGTACCAGCTCCTCCCTCAATCCTTA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCAGATGATTGCCAAGCATAGTACCAGCTCCTCCCTCAATCCTTA  647

seq1  GGCCGCTGCAGTATCTGTTGCATTTCAGTTACTGTTGCATTTTTCCATCA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCTGCAGTATCTGTTGCATTTCAGTTACTGTTGCATTTTTCCATCA  697

seq1  ACGTTTATCCTTATCCATTGGTTTTTCCATGATGTGAGCTTCCAGACTTA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTATCCTTATCCATTGGTTTTTCCATGATGTGAGCTTCCAGACTTA  747

seq1  CATTCAGAAATACTGCTGACACCCTGACCCAATCAAATCCTGTCATCATT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGAAATACTGCTGACACCCTGACCCAATCAAATCCTGTCATCATT  797

seq1  CCTTTCCGTTTTATCCATGCCTCCATATTGTCTAATTCAAGATGTAGTAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCGTTTTATCCATGCCTCCATATTGTCTAATTCAAGATGTAGTAT  847

seq1  TAAGAGTTGTTATTTATTTATTTATTTTCATGCTTTTTCTTTTAAAAATC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGTTGTTATTTATTTATTTATTTTCATGCTTTTTCTTTTAAAAATC  897

seq1  TTTTCCTATTTAGTCCCTTTCTTTTTCCCTTTCTTCTTTTTTGTCTCTTT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTATTTAGTCCCTTTCTTTTTCCCTTTCTTCTTTTTTGTCTCTTT  947

seq1  CCTTGTTTCTTTTTTGTTTCTCCTTCCTTTTTCCTCTTTCTTTCCTTTCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTTCTTTTTTGTTTCTCCTTCCTTTTTCCTCTTTCTTTCCTTTCT  997

seq1  TCTTCTTCCTTCCTTACTATTTTCCTTTTTTTTTT  1019
      |||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCCTTCCTTACTATTTTCCTTTTTTTTTT  1032

seq1: chr18_85103890_85104786
seq2: B6Ng01-234N04.g_68_964

seq1  GAATTCCTAGGGGCTTGTTAGATAAACTGTTAAGGTGGACCAACCAGCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGGGCTTGTTAGATAAACTGTTAAGGTGGACCAACCAGCTA  50

seq1  GCTAGTTTGGAAAGAAGTGTGGATAGCTCAATGACAAGAATCCCTGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTTTGGAAAGAAGTGTGGATAGCTCAATGACAAGAATCCCTGGCTG  100

seq1  CTAAGCAAACTGCCTCACCCTACTTTGAGGACTTGTAAGGTGAGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCAAACTGCCTCACCCTACTTTGAGGACTTGTAAGGTGAGTGGCCT  150

seq1  TGTAAAGTCTCATACTTAGGGTCTGAGCAAGGGTGGTGTAATGGCTATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTCTCATACTTAGGGTCTGAGCAAGGGTGGTGTAATGGCTATTC  200

seq1  TTGGTTGTCAACTTGACTATGTCTGGAACGAACTTCAGGTCAGAATTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTCAACTTGACTATGTCTGGAACGAACTTCAGGTCAGAATTGGA  250

seq1  GGGCTCACCTGTGATCCAGATCTTGAGGCTTAAAAACACAAGTTTCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACCTGTGATCCAGATCTTGAGGCTTAAAAACACAAGTTTCTGAT  300

seq1  CTGGATCTTGGCATGGAGATCTTGAGGCATAGTGGCTATGAAAAGCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATCTTGGCATGGAGATCTTGAGGCATAGTGGCTATGAAAAGCTTAG  350

seq1  CCCCAGGCAAGGTAGTACACGCCTTTAATTCCGGGAGACTAAGGCAAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCAAGGTAGTACACGCCTTTAATTCCGGGAGACTAAGGCAAGGA  400

seq1  GATCTCTGAGTTCAAGGTCAGCCTGGAAGAGAACTAATCCCAGATCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGAGTTCAAGGTCAGCCTGGAAGAGAACTAATCCCAGATCAAGG  450

seq1  TGTGGTTGTAACACCTTTAATCTGGGCCCTAACTTCTTTAGGAGACTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGTAACACCTTTAATCTGGGCCCTAACTTCTTTAGGAGACTATA  500

seq1  TAAGGACATCTTCGCCTGCTTCCACTTACTTGCCTGTCCAAGATCTGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGACATCTTCGCCTGCTTCCACTTACTTGCCTGTCCAAGATCTGTTG  550

seq1  GAATCTGCTTCTACAGAAGACCAGCTGAAACAAATAGCTTCGTGGGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGCTTCTACAGAAGACCAGCTGAAACAAATAGCTTCGTGGGACTG  600

seq1  AGCACAACTACTAGATTCTTGGACTTCCGTTCACAGCTGCCAATTGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAACTACTAGATTCTTGGACTTCCGTTCACAGCTGCCAATTGTTGG  650

seq1  GAGTACAATAATGGAGGAGTCGGAATTGGAGATGTAAGTCATTATAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACAATAATGGAGGAGTCGGAATTGGAGATGTAAGTCATTATAACAA  700

seq1  ATTCCCTTACTGTATTGAGACTATCCATAAG-TTTTGTGACTCTAGAGAA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATTCCCTTACTGTATTGAGACTATCCATAAGTTTTTGTGACTCTAGAGAA  750

seq1  ACCCTGACTACTACTGGTGGGATCTTTTGACCTAAATTTTTTTAAATGGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTACTACTGGTGGGATCTTTTGACCTAAATTTTTTTAAATGGT  800

seq1  TTTAGAGCTTTATTGTAAAAGGACAGGGGGAAAATGAAGTTAGAAAGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAGCTTTATTGTAAAAGGACAGGGGGAAAATGAAGTTAGAAAGAGG  850

seq1  GAAAGAGGCCAGCCATGGCCACGTGGAGAGAGGGGGGAAGAGAGAGAG  897
      ||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAAAGAGGCCAGCCATGGCCACGTGGAGAGAGGGGGGAAGA-AGAGAG  897