BAC Information

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BAC

Clone NameB6Ng01-234O24
Chromosome18 (Build37)
Map Location 27,351,513 - 27,471,257
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234O24.bB6Ng01-234O24.g
ACCGA046548GA046549
length931858
definitionB6Ng01-234O24.b B6Ng01-234O24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,351,513 - 27,352,437)(27,470,400 - 27,471,257)
sequence
gaattcaaaagacattccatcaactttaaagtgtctttgtagatgcttta
agtatttggtccacacaatttttgaacactatttatgggaaaagtcttca
catggttctaaactcaacactcagtttgatcttcagccttacctatctct
ttacatccttgtttaaggaaattatattatctttaattctcatcagtaaa
taatttcccgtcttcatttcatctttctatcttacttccaagcccagcat
acaacaccactgcctttctaaatctctagaattcagaattatgtagcctt
tgttatgctctaaagctcctgccttgaggacacagtttctaatacttttt
aacaacaatcatcagcaaaattttgttaatacaataagaaactatcatga
ctcattaaaccatttttgtccttctattaagaataataaacgtgtggcct
gctgttagaaggacagtgattttatctttggaattcatcagcaggtggtc
agctctccataccagccacatctgttactagctgatagtcaagaatctta
tttcttgtggctgcctaagcctgagaaacatgtagagagagggatcagct
tggggatgccttggactccacacaccaaatcatatcttaagtgctacagt
gagcaactgagctcagcagggggattctactcccaactgaaagtttgaga
gcaaagaaatccctcatcctcctgcatgtgatgcagaccagtgaagccgg
cacagaggtatttattttccccttggaagccactgtggttaaattgaata
atgcaggagtgcttcagtagtttccatactgaacaggaaaagtgctgttc
cttctattctgtcactaaatgaaaaaaggaaagaagaaagaagaagaaga
agaaagaaagaaagaaagaaagaagaaagaa

gaattcagaggaatgcaatacccttaaagggaaccgattagcagcatatt
aaaatttcagaaataaagtgtactgtggtttgaaaaggatcttgggattt
ccactgttataaagagacaccatgaccaaggcaacatttatttatttatt
tatctatttatctatttatttatttatttatttattcatctatctatcta
tctatctatctatctatctatctatctatctatctatctatctatttgag
acagggtttctaggtgtagccctggctgtccagaaactcactctgtagac
caggctggcctcgaactcagaaattcacctgcctctgcctcccaagtgct
aggattaaaggcatgcaccaccatgccgggataaggcaacttttataatg
gacaacatttgattgaggcggttttactggttctgtggttcggttattat
catcatggcagtacgtgtagcagcatgcaggcaggcatggtgctgtgctg
ggggaactgagagttgtacatcttgttttggctcccacatggctaggagg
aagatgtcaatgtccttagtgacagtgacatgtttcctccaacaaaggca
cacttactccaagaccacacctcctaattgtttattccctgagccaagca
tattcaaaccaccacaaaaagggaggtaaaggagaaatgttagagaattt
gtaatgtaaattggagatcagaagattatatacaaagacccttatataca
aagatccacaaaactgttataaatgaacggcttctattaaacgtatgtgt
tcctgctgtgtgtgtgcgtgcatgtatgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27351513_27352437
seq2: B6Ng01-234O24.b_47_977

seq1  GAATTCAAAAGACATTCCATCAACTTTAAAGTGTCTTTGTAGATGCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAGACATTCCATCAACTTTAAAGTGTCTTTGTAGATGCTTTA  50

seq1  AGTATTTGGTCCACACAATTTTTGAACACTATTTATGGGAAAAGTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTGGTCCACACAATTTTTGAACACTATTTATGGGAAAAGTCTTCA  100

seq1  CATGGTTCTAAACTCAACACTCAGTTTGATCTTCAGCCTTACCTATCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTCTAAACTCAACACTCAGTTTGATCTTCAGCCTTACCTATCTCT  150

seq1  TTACATCCTTGTTTAAGGAAATTATATTATCTTTAATTCTCATCAGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCCTTGTTTAAGGAAATTATATTATCTTTAATTCTCATCAGTAAA  200

seq1  TAATTTCCCGTCTTCATTTCATCTTTCTATCTTACTTCCAAGCCCAGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCCCGTCTTCATTTCATCTTTCTATCTTACTTCCAAGCCCAGCAT  250

seq1  ACAACACCACTGCCTTTCTAAATCTCTAGAATTCAGAATTATGTAGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCACTGCCTTTCTAAATCTCTAGAATTCAGAATTATGTAGCCTT  300

seq1  TGTTATGCTCTAAAGCTCCTGCCTTGAGGACACAGTTTCTAATACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATGCTCTAAAGCTCCTGCCTTGAGGACACAGTTTCTAATACTTTTT  350

seq1  AACAACAATCATCAGCAAAATTTTGTTAATACAATAAGAAACTATCATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATCATCAGCAAAATTTTGTTAATACAATAAGAAACTATCATGA  400

seq1  CTCATTAAACCATTTTTGTCCTTCTATTAAGAATAATAAACGTGTGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAACCATTTTTGTCCTTCTATTAAGAATAATAAACGTGTGGCCT  450

seq1  GCTGTTAGAAGGACAGTGATTTTATCTTTGGAATTCATCAGCAGGTGGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAGAAGGACAGTGATTTTATCTTTGGAATTCATCAGCAGGTGGTC  500

seq1  AGCTCTCCATACCAGCCACATCTGTTACTAGCTGATAGTCAAGAATCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCCATACCAGCCACATCTGTTACTAGCTGATAGTCAAGAATCTTA  550

seq1  TTTCTTGTGGCTGCCTAAGCCTGAGAAACATGTAGAGAGAGGGATCAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGTGGCTGCCTAAGCCTGAGAAACATGTAGAGAGAGGGATCAGCT  600

seq1  TGGGGATGCCTTGGACTCCACACACCAAATCATATCTTAAGTGCTACAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATGCCTTGGACTCCACACACCAAATCATATCTTAAGTGCTACAGT  650

seq1  GAGCAACTGAGCTCAGCAGGGGGATTCTACTCCCAACTGAAAGTTTGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAACTGAGCTCAGCAGGGGGATTCTACTCCCAACTGAAAGTTTGAGA  700

seq1  GCAAAGAAATCCCTCATCCTCCTGCATGTGATGCAGACCAGTGAAGCCGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAATCCCTCATCCTCCTGCATGTGATGCAGACCAGTGAAGCCGG  750

seq1  CACAGAGGTATTTATTTTCCCCTTGGAAGCCACTGTGGTTAAATTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGGTATTTATTTTCCCCTTGGAAGCCACTGTGGTTAAATTGAATA  800

seq1  ATGCAGGAGTGCTTCAGTAGTTTCCATACTGAACAGGAAAAGTGCTGTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAGTGCTTCAGTAGTTTCCATACTGAACAGGAAAAGTGCTGTTC  850

seq1  CTTCTATTCTGTCACTAAATGAAAAAAGGAAAGAAAGAAAGA--------  892
      ||||||||||||||||||||||||||||||||| ||||||||        
seq2  CTTCTATTCTGTCACTAAATGAAAAAAGGAAAG-AAGAAAGAAGAAGAAG  899

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA  925
      ||||||||||||||||||||||| |||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAG-AAGAAAGAA  931


seq1: chr18_27470400_27471257
seq2: B6Ng01-234O24.g_64_921 (reverse)

seq1  CACACACACACACACACACACACACACACACATACATGCACGCACACACA  50
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACACACACACACACACACACACACATACATGCACGCACACACA  50

seq1  CAGCAGGAACACATACGTTTAATAGAAGCCGTTCATTTATAACAGTTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGAACACATACGTTTAATAGAAGCCGTTCATTTATAACAGTTTTG  100

seq1  TGGATCTTTGTATATAAGGGTCTTTGTATATAATCTTCTGATCTCCAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTGTATATAAGGGTCTTTGTATATAATCTTCTGATCTCCAATT  150

seq1  TACATTACAAATTCTCTAACATTTCTCCTTTACCTCCCTTTTTGTGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTACAAATTCTCTAACATTTCTCCTTTACCTCCCTTTTTGTGGTGG  200

seq1  TTTGAATATGCTTGGCTCAGGGAATAAACAATTAGGAGGTGTGGTCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATATGCTTGGCTCAGGGAATAAACAATTAGGAGGTGTGGTCTTGG  250

seq1  AGTAAGTGTGCCTTTGTTGGAGGAAACATGTCACTGTCACTAAGGACATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGTGTGCCTTTGTTGGAGGAAACATGTCACTGTCACTAAGGACATT  300

seq1  GACATCTTCCTCCTAGCCATGTGGGAGCCAAAACAAGATGTACAACTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTCCTCCTAGCCATGTGGGAGCCAAAACAAGATGTACAACTCTC  350

seq1  AGTTCCCCCAGCACAGCACCATGCCTGCCTGCATGCTGCTACACGTACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCCCAGCACAGCACCATGCCTGCCTGCATGCTGCTACACGTACTG  400

seq1  CCATGATGATAATAACCGAACCACAGAACCAGTAAAACCGCCTCAATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGATGATAATAACCGAACCACAGAACCAGTAAAACCGCCTCAATCAA  450

seq1  ATGTTGTCCATTATAAAAGTTGCCTTATCCCGGCATGGTGGTGCATGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCCATTATAAAAGTTGCCTTATCCCGGCATGGTGGTGCATGCCT  500

seq1  TTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCTAGCACTTGGGAGGCAGAGGCAGGTGAATTTCTGAGTTCGAGG  550

seq1  CCAGCCTGGTCTACAGAGTGAGTTTCTGGACAGCCAGGGCTACACCTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTGGTCTACAGAGTGAGTTTCTGGACAGCCAGGGCTACACCTAGA  600

seq1  AACCCTGTCTCAAATAGATAGATAGATAGATAGATAGATAGATAGATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCTCAAATAGATAGATAGATAGATAGATAGATAGATAGATAGA  650

seq1  TAGATAGATAGATAGATAGATGAATAAATAAATAAATAAATAAATAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAGATAGATAGATAGATGAATAAATAAATAAATAAATAAATAGATA  700

seq1  AATAGATAAATAAATAAATAAATGTTGCCTTGGTCATGGTGTCTCTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATAAATAAATAAATAAATGTTGCCTTGGTCATGGTGTCTCTTTAT  750

seq1  AACAGTGGAAATCCCAAGATCCTTTTCAAACCACAGTACACTTTATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGAAATCCCAAGATCCTTTTCAAACCACAGTACACTTTATTTCT  800

seq1  GAAATTTTAATATGCTGCTAATCGGTTCCCTTTAAGGGTATTGCATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTTAATATGCTGCTAATCGGTTCCCTTTAAGGGTATTGCATTCCT  850

seq1  CTGAATTC  858
      ||||||||
seq2  CTGAATTC  858


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