BAC Information

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BAC

Clone NameB6Ng01-237O11
Chromosome18 (Build37)
Map Location 63,037,101 - 63,205,873
singlet/doubletdoublet
Overlap geneApcdd1, Napg, 9430028L06Rik, 9030411M15Rik
Upstream geneAblim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
Downstream geneLOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237O11.bB6Ng01-237O11.g
ACCGA048742GA048743
length1,0591,034
definitionB6Ng01-237O11.b B6Ng01-237O11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,037,101 - 63,037,919)(63,204,856 - 63,205,873)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgctttgcagaagctttgcaatttta
tgaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaattttccccctgtacccatgtcttcgaggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttgaccttagtacaaggagatagaaatggatcaattcgc
attcttctacattcaaactactttttaagttgctatgataaaataccatg
accaaatcaatttcttaaaaaaaaaatagtttatattgacttatgcttcc
agagaggtgagagttcagcatgatgggaggcatggttacaagaacaagat
actgcgttcattatcttcaaatacaagcaccaaacagtggcagccagcta
gaagtggcacagggcttttaatctggtatactcccttcaccaaaggcctt
accttttaaaccttctcagagagcaacattaactggggcccaagtgttct
aatatgctaacctatggtgagcattgtcattcagaccactccaggaggta
ggactaaagcctgaggagatagataagtgtttaagaggaagaagaaatca
gtatgccagggaaaggtatctagaagtatggatgccacagtactcactag
gtttgtgaggggacacctggtacaggtggtacaccatgagtttcttattg
ttatatctcaattctctgggactgatgtctgagcagatcccaaaaaagga
tgctcaggatgatgaggtgggcataatggcatctggcatctagtgttctc
tatataggcatattgcatggtagagggtgcagagccaacaagagacagcc
tgcagcagg
gaattcctttattgttgttattttttgggttttttttttttttttggttt
ttttggtaccattttattttttatgttggttgccacgtaaccaatcagtg
tcccttccacatgctggcttggcttggtccctatgactcagaaaatgagg
tggcattgctgagcttgtctggctctcattttgaaccccatgttgtaaaa
ctaacatcttttctacaaattttacgggcagttatttttgctggtgcagt
tgagttgagaaatgctttccgtggacttgggcttgcaattccaaagaaag
catatttccttcggccgccaaagaaacaactgcattgcaacgcaacgcta
caaggatatgaactttgtaataggacgcctgggtctcatccttatcctgc
atcctgtctcacctggagagtaccgtttgaaagccaatccctagccagta
cttttttttttttttccaactccagtttcttctgtttatttatcctgcca
aacaggtccttccctgtcccgggagcccccactgctgtgatcatcctgta
ggtggcgctgttgtgcgtggttgccgcatggcggtgtgttggtgtgttgg
tcagttgtccctgggtgacttggtgcaccacttgggtttttaactctgtg
tttctgtaactgtttgcgctgctagctgctacactgaagcgaccctgctg
atctcaaggcagtccaccctttgatgatttagatggacaagaccccgttc
ctaaaacaagcgagcgtgctcggcctaggctccgtaaaatgttcagcctt
ggacatgtcctcttcgtcagctgacagtggcagtgttagcatcaaggtgc
tttaccttgtgcatgctttgttctgtaactcttggatctccctccccgtg
gatgccgttgcaagtagaaggttcgtgaagatgaatgccaattctatttt
tttttttctagcttgttttagaattggcatgaccggaaaaaaaagcataa
accgtagtcctttcttggtgataataatttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_63037101_63037919
seq2: B6Ng01-237O11.b_293_1107

seq1  GCTGTTCTATTCAGGAATTTTCCCCCTGTACCCATGTCTTCGAGGCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTCTATTCAGGAATTTTCCCCCTGTACCCATGTCTTCGAGGCTTTT  50

seq1  CCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTT  100

seq1  CCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCCACTTAGATTTGACCTTAGTACAAGGAGATAGAAATGGATCA  150

seq1  ATTCGCATTCTTCTACATTCAAACTACTTTTTAAGTTGCTATGATAAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGCATTCTTCTACATTCAAACTACTTTTTAAGTTGCTATGATAAAAT  200

seq1  ACCATGACCAAATCAATTTCTTAAAAAAAAAATAGTTTATATTGACTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGACCAAATCAATTTCTTAAAAAAAAAATAGTTTATATTGACTTAT  250

seq1  GCTTCCAGAGAGGTGAGAGTTCAGCATGATGGGAGGCATGGTTACAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAGAGAGGTGAGAGTTCAGCATGATGGGAGGCATGGTTACAAGAA  300

seq1  CAAGATACTGCGTTCATTATCTTCAAATACAAGCACCAAACAGTGGCAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACTGCGTTCATTATCTTCAAATACAAGCACCAAACAGTGGCAGC  350

seq1  CAGCTAGAAGTGGCACAGGGCTTTTAATCTGGTATACTCCCTTCACCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAGAAGTGGCACAGGGCTTTTAATCTGGTATACTCCCTTCACCAAA  400

seq1  GGCCTTACCTTTTAAACCTTCTCAGAGAGCAACATTAACTGGGGCCCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTACCTTTTAAACCTTCTCAGAGAGCAACATTAACTGGGGCCCAAG  450

seq1  TGTTCTAATATGCTAACCTATGGTGAGCATTGTCATTCAGACCACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAATATGCTAACCTATGGTGAGCATTGTCATTCAGACCACTCCAG  500

seq1  GAGGTAGGACTAAAGCCTGAGGAGATAGATAAGTGTTTAAGAGGAAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGACTAAAGCCTGAGGAGATAGATAAGTGTTTAAGAGGAAGAAG  550

seq1  AAATCAGTATGCCAGGG-AAGGTATCTAGAAGTATGGATGCCACAGTACT  599
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAATCAGTATGCCAGGGAAAGGTATCTAGAAGTATGGATGCCACAGTACT  600

seq1  CACTAGGTTTGTGAGGGGACACCTGGTACAGGTGGTACACCATGAGTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGGTTTGTGAGGGGACACCTGGTACAGGTGGTACACCATGAGTTTC  650

seq1  TTATTGTTATATCTCAATTCTCTGGGACTGATGTCTGAGCAGATCCCAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTATATCTCAATTCTCTGGGACTGATGTCTGAGCAGATCCCAAA  700

seq1  AAAGGATGCTCAGGAATGATGAGGGTGGGCATAATGGCATCTGGCATCTA  749
      |||||||||||||| ||||||| |||||||||||||||||||||||||| 
seq2  AAAGGATGCTCAGG-ATGATGA-GGTGGGCATAATGGCATCTGGCATCT-  747

seq1  AGTGTTCTCTATATAGGGCATATGCCATGGTTAGAGGGTGCAGAGGCAAC  799
      ||||||||||||||| |||||||  ||||| |||||||||||||| ||||
seq2  AGTGTTCTCTATATA-GGCATATTGCATGG-TAGAGGGTGCAGAGCCAAC  795

seq1  AAGAGACAGCCTGCAGCAGG  819
      ||||||||||||||||||||
seq2  AAGAGACAGCCTGCAGCAGG  815

seq1: chr18_63204856_63205873
seq2: B6Ng01-237O11.g_66_1099 (reverse)

seq1  AAAT-AATTA-TATCAC--AGAAAGGGCTACGG-TTATGCTTTTTTTT-C  44
      |||| ||||| ||||||  ||||||| |||||| |||||||||||||| |
seq2  AAATAAATTATTATCACCAAGAAAGGACTACGGTTTATGCTTTTTTTTCC  50

seq1  GGTCATGCAAATTCTTAAAACAAGCTAG--AAAAAAAAATAGAA-TGGCA  91
      |||||||| ||||| |||||||||||||  |||||||||||||| |||||
seq2  GGTCATGCCAATTC-TAAAACAAGCTAGAAAAAAAAAAATAGAATTGGCA  99

seq1  TTCATC-TCACGAA-CTTCTACTTGCAACGGCATCCACGGGGA-GGAGAT  138
      |||||| ||||||| |||||||||||||||||||||||||||| ||||||
seq2  TTCATCTTCACGAACCTTCTACTTGCAACGGCATCCACGGGGAGGGAGAT  149

seq1  CCAAGAG-TACAGAACAAAGCATGCACAA-GTTAAGCACCTTGATGCT-A  185
      ||||||| ||||||||||||||||||||| || ||||||||||||||| |
seq2  CCAAGAGTTACAGAACAAAGCATGCACAAGGTAAAGCACCTTGATGCTAA  199

seq1  CACTGCCACTGTCAGCTGACGAAGAGGACATGTCC-AGGCTGAACATTTT  234
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACTGCCACTGTCAGCTGACGAAGAGGACATGTCCAAGGCTGAACATTTT  249

seq1  ACGGAGCCTAGGCCGAGCACGCTCGCTTGTTTTAGGAACGGGGTCTTGTC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGAGCCTAGGCCGAGCACGCTCGCTTGTTTTAGGAACGGGGTCTTGTC  299

seq1  CATCTAAATCATC-AAGGGTGGACTGCCTTGAGATCAGCAGGGTCGCTTC  333
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CATCTAAATCATCAAAGGGTGGACTGCCTTGAGATCAGCAGGGTCGCTTC  349

seq1  AGTGTAGCAGCTAGCAGCGCAAACAGTTACAGAAACACAGAGTTAAAAAC  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAGCAGCTAGCAGCGCAAACAGTTACAGAAACACAGAGTTAAAAAC  399

seq1  CCAAGTGGTGCACCAAGTCACCCAGGGACAACTGACCAACACACCAACAC  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTGGTGCACCAAGTCACCCAGGGACAACTGACCAACACACCAACAC  449

seq1  ACCGCCATGCGGCAACCACGCACAACAGCGCCACCTACAGGATGATCACA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCCATGCGGCAACCACGCACAACAGCGCCACCTACAGGATGATCACA  499

seq1  GCAGTGGGGGCTCCCGGGACAGGGAAGGACCTGTTTGGCAGGATAAATAA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGGGCTCCCGGGACAGGGAAGGACCTGTTTGGCAGGATAAATAA  549

seq1  ACAGAAGAAACTGGAGTTGGAAAAAAAAAAAAAAGTACTGGCTAGGGATT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAACTGGAGTTGGAAAAAAAAAAAAAAGTACTGGCTAGGGATT  599

seq1  GGCTTTCAAACGGTACTCTCCAGGTGAGACAGGATGCAGGATAAGGATGA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCAAACGGTACTCTCCAGGTGAGACAGGATGCAGGATAAGGATGA  649

seq1  GACCCAGGCGTCCTATTACAAAGTTCATATCCTTGTAGCGTTGCGTTGCA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCGTCCTATTACAAAGTTCATATCCTTGTAGCGTTGCGTTGCA  699

seq1  ATGCAGTTGTTTCTTTGGCGGCCGAAGGAAATATGCTTTCTTTGGAATTG  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTTGTTTCTTTGGCGGCCGAAGGAAATATGCTTTCTTTGGAATTG  749

seq1  CAAGCCCAAGTCCACGGAAAGCATTTCTCAACTCAACTGCACCAGCAAAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCAAGTCCACGGAAAGCATTTCTCAACTCAACTGCACCAGCAAAA  799

seq1  ATAACTGCCCGTAAAATTTGTAGAAAAGATGTTAGTTTTACAACATGGGG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGCCCGTAAAATTTGTAGAAAAGATGTTAGTTTTACAACATGGGG  849

seq1  TTCAAAATGAGAGCCAGACAAGCTCAGCAATGCCACCTCATTTTCTGAGT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGAGAGCCAGACAAGCTCAGCAATGCCACCTCATTTTCTGAGT  899

seq1  CATAGGGACCAAGCCAAGCCAGCATGTGGAAGGGACACTGATTGGTTACG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGACCAAGCCAAGCCAGCATGTGGAAGGGACACTGATTGGTTACG  949

seq1  TGGCAACCAACATAAAAAATAAAATGGTACCAAAAAAACCAAAAAAAAAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACCAACATAAAAAATAAAATGGTACCAAAAAAACCAAAAAAAAAA  999

seq1  AAAAAACCCAAAAAATAACAACAATAAAGGAATTC  1018
      |||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCAAAAAATAACAACAATAAAGGAATTC  1034