BAC Information

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BAC

Clone NameB6Ng01-238O16
Chromosome18 (Build37)
Map Location 7,380,069 - 7,381,186
singlet/doubletsinglet
Overlap geneMpp7
Upstream geneEpc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
Downstream geneEG622384, LOC100039562, LOC100039606, Wac, LOC665121, LOC225134, LOC665132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238O16.bB6Ng01-238O16.g
ACCGA049485GA049486
length1,121989
definitionB6Ng01-238O16.b B6Ng01-238O16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcatggagtcttagagaacaaaggaacattgacagagaaacagg
cttatgacagccatgcaggaaaagtagagggcaatcatgggacagagtgg
aggcagaagtgccagtgggaagaaaggtatggtacccaacactgtccctt
ccttcccctctcctaccaccatccccttaactcagagttcctacttggct
agtctcccctctgtaagctcatcagtatccttttctcatgagtcttcttg
cccacagaggagaaaggggaaggcagaggaatgctcagtcaattcctgtg
ctatactgagttctgaagctttgcaatatactcccaagagtacacttgat
attgctggggcagaggtagggtgggagtgaagcatgtttgggacagggtg
tcatcaccttctccagtatcctagaaggagaagtttggataggagcaatt
tgggacctggcacagggtaagctggccatggggcctgtgctctaactata
tctctgtacagtccatccttagatcccaaccacaagttgtgtgaggttta
agataaggaagggatgccagctgatgctccatcacttttgggttcaggct
agtgttcagccattcttccagcagtttgctcatgtatgcccaatctcgtc
cctgactagccattttctttaaatgcagcgtgaatctgccatatttcttt
gtcatggcacatggcatttgccttgctcattatatgatcttttgtatgtg
catttggttgatttaaatgtgttaaggccctggggcagctttcagattct
ctagcctgaaattttcttggttaaaaaatctctagccaatgattttcttt
ttattgaaatctaaaaaaaatattttaagaatgaagtgatcattcaggat
tgttcagtacaatcttaggtacttgtatataaattaattggtaatatatt
cagccattattttagtatgttttagtttcctgaaaaaaaaaaggtaagtg
tataaactttttaaagcaactctataaaaccaatcttctcatgtatagga
gctttactagtcttctgctagatcgatggaattagacttgcatttttcag
tcctcattgttttctgattca
gaattccacatctgatagacagctaatatctaatgcatatatataaggaa
cttttaaatactatcaagaaaacaaataatccaatttataaaatggagtt
cacattaaccagaaaattataaaaataggaaactcaaatggttgaaaagc
tctttttttttgaagcatatatattttttattaggtatttatttcattta
catttccaatgctatcccaaaagtcccccacacacttccccacccactcc
cctcccatccactccctcttcttggccctggcgttcccctgtactgaggc
atataaagtttgcaagaccaatgggcctctctttccactgatggccgact
acgccatcttctgctacatatgcagctagagacacgagctccgggggtac
tggttagttcatattgttgttccagctatagggttgcagatccccccagc
tccttgggtactttctctagctcctccattgagggccctgtgattcatcc
aatagctgactgtgagcatccacttctgtgtttgctaatgttcaacatcc
ttagtcaccagataaaatgcaaatcaactactttaagatttcatcttata
cctgtcagaacaactaagatcaataaaacaatgtgaggtgcaagtaaggg
aaacacctattccttatggggctataaacttatacagccactgtggaaat
tagtggggcagttcttcagtagaatgggaatcaatctaccttaagttcac
ctattccactctggggcatatactcaaaggactcttcattctaccacaga
gacacttgttcaaccatgctccatgctgctctattcataatagccagata
ttgggaaacaacatagattcccattttgataaaatggataaagaagttgt
agtatattttcacaatggaagttattactcagctctttaaaaattgacat
ggggaatttcaagaaaaaatggataagaactattagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_7380069_7381186
seq2: B6Ng01-238O16.b_44_1164 (reverse)

seq1  TGAAACAGAAAACAATAGAGACTG-AAAATGCAAGTCTAA-TCCATCGAT  48
      |||| |||||||||||   ||||| ||||||||||||||| |||||||| 
seq2  TGAATCAGAAAACAATGAGGACTGAAAAATGCAAGTCTAATTCCATCGA-  49

seq1  TCTAGCAGGAAGACTAGTAAAGCT-CTATACATGAGAAGGATTGGTTTTT  97
      ||||||| |||||||||||||||| ||||||||||||| |||||| ||||
seq2  TCTAGCA-GAAGACTAGTAAAGCTCCTATACATGAGAA-GATTGG-TTTT  96

seq1  ATAGAGTTGCTTTAAAAAAGTTTATACACTTA-CTTTTTTTTTTCAGGAA  146
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  ATAGAGTTGCTTT-AAAAAGTTTATACACTTACCTTTTTTTTTTCAGGAA  145

seq1  ACTTAAAACATACT-AAATAATGGCTGAATATATTACCAATTAATTTATA  195
      || ||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AC-TAAAACATACTAAAATAATGGCTGAATATATTACCAATTAATTTATA  194

seq1  TACAAGTACCTAAGATTGTACTGAACAATCCTGAATGATCACTTCATTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTACCTAAGATTGTACTGAACAATCCTGAATGATCACTTCATTCT  244

seq1  T-AAATATTTTTTTTAGATTTCAAT-AAAAGAAAATCATTGGCTAGAGAT  293
      | ||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAAATATTTTTTTTAGATTTCAATAAAAAGAAAATCATTGGCTAGAGAT  294

seq1  TTTTTAACCAAGAAAATTTCAGGCTAGAGAATCTGAAAGCTGCCCCA-GG  342
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTTAACCAAGAAAATTTCAGGCTAGAGAATCTGAAAGCTGCCCCAGGG  344

seq1  CCTTAACACATTTAAATCAACCAAATGCACATAC-AAAGATCATATAATG  391
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTTAACACATTTAAATCAACCAAATGCACATACAAAAGATCATATAATG  394

seq1  AGCAAGGCAAATGCCATGTGCCATGACAAAGAAATATGGCAGATTCACGC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCAAATGCCATGTGCCATGACAAAGAAATATGGCAGATTCACGC  444

seq1  TGCATTTAAAGAAAATGGCTAGTCAGGGACGAGATTGGGCATACATGAGC  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTAAAGAAAATGGCTAGTCAGGGACGAGATTGGGCATACATGAGC  494

seq1  AAACTGCTGGAAGAATGGCTGAACACTAGCCTGAACCCAAAAGTGATGGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTGGAAGAATGGCTGAACACTAGCCTGAACCCAAAAGTGATGGA  544

seq1  GCATCAGCTGGCATCCCTTCCTTATCTTAAACCTCACACAACTTGTGGTT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGCTGGCATCCCTTCCTTATCTTAAACCTCACACAACTTGTGGTT  594

seq1  GGGATCTAAGGATGGACTGTACAGAGATATAGTTAGAGCACAGGCCCCAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCTAAGGATGGACTGTACAGAGATATAGTTAGAGCACAGGCCCCAT  644

seq1  GGCCAGCTTACCCTGTGCCAGGTCCCAAATTGCTCCTATCCAAACTTCTC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCTTACCCTGTGCCAGGTCCCAAATTGCTCCTATCCAAACTTCTC  694

seq1  CTTCTAGGATACTGGAGAAGGTGATGACACCCTGTCCCAAACATGCTTCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAGGATACTGGAGAAGGTGATGACACCCTGTCCCAAACATGCTTCA  744

seq1  CTCCCACCCTACCTCTGCCCCAGCAATATCAAGTGTACTCTTGGGAGTAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCCTACCTCTGCCCCAGCAATATCAAGTGTACTCTTGGGAGTAT  794

seq1  ATTGCAAAGCTTCAGAACTCAGTATAGCACAGGAATTGACTGAGCATTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAGCTTCAGAACTCAGTATAGCACAGGAATTGACTGAGCATTCC  844

seq1  TCTGCCTTCCCCTTTCTCCTCTGTGGGCAAGAAGACTCATGAGAAAAGGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTCCCCTTTCTCCTCTGTGGGCAAGAAGACTCATGAGAAAAGGA  894

seq1  TACTGATGAGCTTACAGAGGGGAGACTAGCCAAGTAGGAACTCTGAGTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATGAGCTTACAGAGGGGAGACTAGCCAAGTAGGAACTCTGAGTTA  944

seq1  AGGGGATGGTGGTAGGAGAGGGGAAGGAAGGGACAGTGTTGGGTACCATA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGATGGTGGTAGGAGAGGGGAAGGAAGGGACAGTGTTGGGTACCATA  994

seq1  CCTTTCTTCCCACTGGCACTTCTGCCTCCACTCTGTCCCATGATTGCCCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCCACTGGCACTTCTGCCTCCACTCTGTCCCATGATTGCCCT  1044

seq1  CTACTTTTCCTGCATGGCTGTCATAAGCCTGTTTCTCTGTCAATGTTCCT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTTCCTGCATGGCTGTCATAAGCCTGTTTCTCTGTCAATGTTCCT  1094

seq1  TTGTTCTCTAAGACTCCATGAGAATTC  1118
      |||||||||||||||||||||||||||
seq2  TTGTTCTCTAAGACTCCATGAGAATTC  1121