BAC Information

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BAC

Clone NameB6Ng01-242I10
Chromosome18 (Build37)
Map Location 48,682,291 - 48,683,378
singlet/doubletsinglet
Overlap genenone
Upstream geneA730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
Downstream geneLOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242I10.bB6Ng01-242I10.g
ACCGA052146GA052147
length1,2031,095
definitionB6Ng01-242I10.b B6Ng01-242I10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctccaaacaaattctataaagttattgttactgtaatataaaag
tacatacagacacatgtttatagaaaaaaaaaagaaagaaaaggaacacc
aagctaaaattcttgaggaacatatatacaaaagccctcaactaaacatg
agctactgatccctatagatactacaaagatttttctctgtagtcaagca
ggattcatccctttgatacaacgttagtttaaggtttccaagttgacaaa
taatacaatgtaatcaatggcacaaagtacaagaaaaacatgatctttac
catacatggagcagagacatatcatagaattcagcattctatcacaatca
aaatgccgaacaaattatgcacaaaatgaacaaaccacaataaaataaat
tccccttgaagtaaggcaatggcaactctagaactcaatgggaaaaagtt
gaatgcttctcctttgagatctagagcactggaaatatgcatactttcac
cacttttactgaatgtagtgcatatagacctaaccaaagaaagaagaaga
tcaaaagtgaagcgtcagtacttgcagatgatattcttacctgggagaaa
agagctccaaagatttctgctaaaaaatatacttaatttgaggtcaggaa
atttgcagcaaacaaaaggaagatatagaaatatatcattgctaatactt
caaatggcagattctttgcagtagactatttaggccataagttaatacat
ccaccacggttataaaacatgtttgaatgaattataacaacagaggtgag
agagttctaaaatgagtgttttgaaacactggtagaagagattgaagaga
acccaaaattctcatgactggaaaaatccaatttctttaaatgcctttac
tacacaagtgatgtatggattcaatgagatcattattaaaataccaatga
cactgttcacaggacgatgaaaagaactatcatatatatatatatatata
tatatatatatatatatatagcccttttagtagctaatgccatctttggt
aattatataaaacaacagtttttatatgaaccttgactttaaacagaact
aaaaatactatagagctaaagccatactgtattgactaagaaaatagatc
taatgagaagagagtctgaagtttatccccacaactattggtactctaca
tgc

gaattctaattgtttaatacataaccaggtagccccatacttacatactg
actctgaagtctttcttcctcataggttttaaattttatttatttattca
tttatttatttatttatttatttattatctatttatttatgaaaacatac
tttgttgctgcagaacagtaatattagcccagacctgtgacctcatacct
tacctaatcgccccttaagatattagagacaaacaaatattaaagtatga
catttcaaaccatttattttcatgcacatttggcctctgcaccaagcaaa
aatgttcaatgctaatgagtatgtcaataaaattaagttgtagaaatcca
tcattatcttatctaaaattttctttcatataatgcatatgtttgctggt
tttgatgtaactattatttaccttctcatttaattttgtgttctcatgaa
tctttaaattcaactttacatttaaaatattgtgctacattaatttctgt
cttaacaggctttgccagctgtgctggcttaaacctataatctcagcaca
tgtgagacagaggagaaaaatttactgtgagtttgaagccagcacagaac
tctttaatgatttctaggtcagccaaaactacatcacaaaaccctgtctc
aaattgaaaaaaacatatttaaaacacaaatttacatactttgtgatcat
tttactgagaaaaaagcatttcgtgatgttatttacaattttcatactaa
agacttggaatatacatgatatataaaatgttattatacatgatatatat
gcatcaatctcttttacaaaatattacacataaatatttctcatgtgatt
tccatttttctgtgtttgttattcctgtttgacctgtaatgtgaaaccaa
ggcaaaacgaggccaaaaaaaaaaaaaaaaccctaatgtgtttcgaaaga
agaaggaagaagaagaatgatgatgaattattgatatgaatgaaagaacg
acttgtttttgttagtttgaagaaattggggttaagtgttttatatgtgc
ctcccttacacccaatctcatgagacccaggacgtggattatagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_48682291_48683378
seq2: B6Ng01-242I10.g_68_1162 (reverse)

seq1  CCTATAATCCACGTCCTGGTCTTCAT--GATTGTGT---AGGGA-GCAC-  43
      |||||||||||||||||||   ||||  ||||| ||   ||||| |||| 
seq2  CCTATAATCCACGTCCTGGGTCTCATGAGATTGGGTGTAAGGGAGGCACA  50

seq1  TAT-AAACACTTAACCC--ATTTC-TCAAACCTAC-AAAACAGTTCTTTC  88
      ||| |||||||||||||  ||||| ||||||  || ||||||  || |||
seq2  TATAAAACACTTAACCCCAATTTCTTCAAACTAACAAAAACAAGTCGTTC  100

seq1  TTTCTTTC-TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  137
      |||| ||| | ||  |  ||| |    || |||||   ||||| |||   
seq2  TTTCATTCATATCAATAATTCAT--CATCATTCTT--CTTCTTCCTT--C  144

seq1  TTCTTTCTAAACACATTAGGGTTTTTTTTTTTTTTTTTGGCCTCGTTTTT  187
      ||||||| ||||||||||||| ||||||||||||||||||||||| ||||
seq2  TTCTTTCGAAACACATTAGGG-TTTTTTTTTTTTTTTTGGCCTCG-TTTT  192

seq1  GCCTTGGTTTTCACATTACAGGTCAAACAGGAATAACAAACACAGAAAAA  237
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGG-TTTCACATTACAGGTCAAACAGGAATAACAAACACAGAAAAA  241

seq1  TGGAAATCACATGAG-AATATTTATGTGTAATATTTTTGTAAAGAGATTG  286
      ||||||||||||||| |||||||||||||||||||||   ||||||||||
seq2  TGGAAATCACATGAGAAATATTTATGTGTAATATTTTGTAAAAGAGATTG  291

seq1  ATGCATATATATCATGTAT-ATAACATTTTATATATCATGTATTATTCCA  335
      ||||||||||||||||||| |||||||||||||||||||||| |||||||
seq2  ATGCATATATATCATGTATAATAACATTTTATATATCATGTA-TATTCCA  340

seq1  AGTCTTTAGTATGAAAATTGTAAATAACATCACGAAATGCTTTTTTCTCA  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAGTATGAAAATTGTAAATAACATCACGAAATGCTTTTTTCTCA  390

seq1  GTAAAATGATCACAAAGTATGT-AATTTGTGTTTTAAATATG-TTTTTTC  433
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  GTAAAATGATCACAAAGTATGTAAATTTGTGTTTTAAATATGTTTTTTTC  440

seq1  AATTTGAGACAGGGTTTTGTGATGTAGTTTTGGCTGACCTAGAAATCATT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGAGACAGGGTTTTGTGATGTAGTTTTGGCTGACCTAGAAATCATT  490

seq1  AAAGAGTTCTGTGCTGGCTTCAAACTCACAGTAAATTTTTCTCCTCTGTC  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTTCTGTGCTGGCTTCAAACTCACAGTAAATTTTTCTCCTCTGTC  540

seq1  TCACATGTGCTGAGATTATAGGTTTAAGCCAGCACAGCTGGCAAAGCCTG  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATGTGCTGAGATTATAGGTTTAAGCCAGCACAGCTGGCAAAGCCTG  590

seq1  TTAAGACAGAAATTAATGTAGCACAATATTTTAAATGTAAAGTTGAATTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAGAAATTAATGTAGCACAATATTTTAAATGTAAAGTTGAATTT  640

seq1  AAAGATTCATGAGAACACAAAATTAAATGAGAAGGTAAATAATAGTTACA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTCATGAGAACACAAAATTAAATGAGAAGGTAAATAATAGTTACA  690

seq1  TCAAAACCAGCAAACATATGCATTATATGAAAGAAAATTTTAGATAAGAT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACCAGCAAACATATGCATTATATGAAAGAAAATTTTAGATAAGAT  740

seq1  AATGATGGATTTCTACAACTTAATTTTATTGACATACTCATTAGCATTGA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGGATTTCTACAACTTAATTTTATTGACATACTCATTAGCATTGA  790

seq1  ACATTTTTGCTTGGTGCAGAGGCCAAATGTGCATGAAAATAAATGGTTTG  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGCTTGGTGCAGAGGCCAAATGTGCATGAAAATAAATGGTTTG  840

seq1  AAATGTCATACTTTAATATTTGTTTGTCTCTAATATCTTAAGGGGCGATT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATACTTTAATATTTGTTTGTCTCTAATATCTTAAGGGGCGATT  890

seq1  AGGTAAGGTATGAGGTCACAGGTCTGGGCTAATATTACTGTTCTGCAGCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGTATGAGGTCACAGGTCTGGGCTAATATTACTGTTCTGCAGCA  940

seq1  ACAAAGTATGTTTTCATAAATAAATAGATAATAAATAAATAAATAAATAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTATGTTTTCATAAATAAATAGATAATAAATAAATAAATAAATAA  990

seq1  ATAAATGAATAAATAAATAAAATTTAAAACCTATGAGGAAGAAAGACTTC  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAATAAATAAATAAAATTTAAAACCTATGAGGAAGAAAGACTTC  1040

seq1  AGAGTCAGTATGTAAGTATGGGGCTACCTGGTTATGTATTAAACAATTAG  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCAGTATGTAAGTATGGGGCTACCTGGTTATGTATTAAACAATTAG  1090

seq1  AATTC  1088
      |||||
seq2  AATTC  1095


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