BAC Information

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BAC

Clone NameB6Ng01-246H23
Chromosome18 (Build37)
Map Location 61,094,501 - 61,280,233
singlet/doubletdoublet
Overlap geneCamk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi
Downstream geneA630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246H23.bB6Ng01-246H23.g
ACCGA055098GA055099
length1,195965
definitionB6Ng01-246H23.b B6Ng01-246H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,094,501 - 61,095,689)(61,279,273 - 61,280,233)
sequence
gaattcatcactctcctcttttacatagggaaactgaaacccaacccgtc
aggataagccagctgggtgagggttctggtcttctcgtttcccagctagt
cccctggctgccatggcaacccttcaagagggtctaggccagagatgatt
gtgggcacctgtggctggcagtcagccacacccaggccaccaggacacca
gctctgattgtcagccagaaaacaatttcccagtgccaagtcgctcttca
cagcccattagcgcgttcccacattctcagcaatagacccactttgctgt
ccttatgctgtctgcctggtgctgggtggggcacacacccaggagagact
gttcagccctgaggagagaccccttccctctttgccagacccccactcct
tcccccccaacccccgtaagctcagcagacagggtccgttctgtttccgc
cgaggctaaccgttttcatcctcttgatctaacgattcccatacaaggca
tcctttcttgagcatttactgtactccagggactcggctgaacacattgc
ctgcctcattatcgcattgaagcaactgctcagggtggggactctattgt
ccgcatcttgtcggggaggaggcaggcaaactaagatgatgtcacttgcc
agtaagggcctgaacaaggatggaggtttgaactcaggctgggcaactct
tagctggaccacaggatagcaggagccattgactaggctacaacactgaa
acagacaggtctctgtaccgtggagtcacaacctttcctcaaacccacgt
tgccagggaagagactgaagcccacaggcccacccctagctaagttctct
cagaatgtctgagacccgaaagccccactctcccggtgctgtctttgcct
cacacatatacctctaactagctaacagctcttggaacacatggaagaaa
attctgaagagtgacacaccctgtgctgtctcataccttaataactcatg
gtgccacaaactcagctagagcaagtgctagtcactcactgtgtgtgcag
gtgccctctctgtggcctggaagcaaggattcacccttcccctcccccaa
ttggccttaccctccatttatagcagaatacaaggtctacccctcctgtt
ctacattcgaccatgccaatctgtccttgggcttagaaaaacacc
gaattctttccgtccccggtgactctggggtcctgtccttgtgaaggtag
agtggcctgtgaggtcccttcctagaaggagggatgactggaatgctttg
ctttcttgggagctgggcctagctaaatcctcactgcagatcaattcact
ggttgctcatgctagctctaagttgaggctctccactgattccttgacag
agattgaagagggcttgggaacatcagaccttggccaccctccccatcag
gcccttggtctgtggggtaggtattgagcctggggatggtaaagacctgg
gcatttctcctggaagctctccagaccctcctccttcaatttaggcctgg
gcccaaaatctgttcagtggtttctttctgagtctacccttcccttctct
ctacccatcatcctccctaccttttccctatccctggggccagctgactc
gggtcctttcctcttcccctgtgccttccccactgttgtggtttctctgg
gggacagaaggggatgactcaactcagcccttagcagaaacaacccttcc
atagacaggccatgtctcactcagacctggggataaagacaggtggggcc
aagtcccctacctacaaagaggttggccagaagagagctgctaactagac
tgcctctttcaggtctttctttcaggagcaactcagtcaatggacatcca
agggtgaaggagaaaaggccagcctgaggctgcaggtcccctggctttgg
gctacataagaagcagtaagtttcctgggatgggaaatgagacggtaccc
agggtgatatattcagaaaatggtgtttgtagagagagctgaggtgcctt
agaccaccatgaggtgaggcctgtcagtcaaaggcagaaagagctctgag
atcttggtgcttatggggcaccagagacagctttttagtttccgtatgag
gaagggttttgtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61094501_61095689
seq2: B6Ng01-246H23.b_46_1240

seq1  GAATTCATCACTCTCCTCTTTTACATAGGGAAACTGAAACCCAACCCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTCTCCTCTTTTACATAGGGAAACTGAAACCCAACCCGTC  50

seq1  AGGATAAGCCAGCTGGGTGAGGGTTCTGGTCTTCTCGTTTCCCAGCTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAGCCAGCTGGGTGAGGGTTCTGGTCTTCTCGTTTCCCAGCTAGT  100

seq1  CCCCTGGCTGCCATGGCAACCCTTCAAGAGGGTCTAGGCCAGAGATGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGCTGCCATGGCAACCCTTCAAGAGGGTCTAGGCCAGAGATGATT  150

seq1  GTGGGCACCTGTGGCTGGCAGTCAGCCACACCCAGGCCACCAGGACACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACCTGTGGCTGGCAGTCAGCCACACCCAGGCCACCAGGACACCA  200

seq1  GCTCTGATTGTCAGCCAGAAAACAATTTCCCAGTGCCAAGTCGCTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGATTGTCAGCCAGAAAACAATTTCCCAGTGCCAAGTCGCTCTTCA  250

seq1  CAGCCCATTAGCGCGTTCCCACATTCTCAGCAATAGACCCACTTTGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATTAGCGCGTTCCCACATTCTCAGCAATAGACCCACTTTGCTGT  300

seq1  CCTTATGCTGTCTGCCTGGTGCTGGGTGGGGCACACACCCAGGAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATGCTGTCTGCCTGGTGCTGGGTGGGGCACACACCCAGGAGAGACT  350

seq1  GTTCAGCCCTGAGGAGAGACCCCTTCCCTCTTTGCCAGACCCCCACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCCCTGAGGAGAGACCCCTTCCCTCTTTGCCAGACCCCCACTCCT  400

seq1  TCCCCCCCAACCCCCGTAAGCTCAGCAGACAGGGTCCGTTCTGTTTCCGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCCAACCCCCGTAAGCTCAGCAGACAGGGTCCGTTCTGTTTCCGC  450

seq1  CGAGGCTAACCGTTTTCATCCTCTTGATCTAACGATTCCCATACAAGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGCTAACCGTTTTCATCCTCTTGATCTAACGATTCCCATACAAGGCA  500

seq1  TCCTTTCTTGAGCATTTACTGTACTCCAGGGACTCGGCTGAACACATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTGAGCATTTACTGTACTCCAGGGACTCGGCTGAACACATTGC  550

seq1  CTGCCTCATTATCGCATTGAAGCAACTGCTCAGGGTGGGGACTCTATTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCATTATCGCATTGAAGCAACTGCTCAGGGTGGGGACTCTATTGT  600

seq1  CCGCATCTTGTCGGGGAGGAGGCAGGCAAACTAAGATGATGTCACTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCATCTTGTCGGGGAGGAGGCAGGCAAACTAAGATGATGTCACTTGCC  650

seq1  AGTAAGGGCCTGAACAAGGATGGAGGTTTGAACTCAGGCTGGGCAACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGCCTGAACAAGGATGGAGGTTTGAACTCAGGCTGGGCAACTCT  700

seq1  TAGCTGGACCACAGGATAGCAGGAGCCATTGACTAGGCTACAACACTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGACCACAGGATAGCAGGAGCCATTGACTAGGCTACAACACTGAA  750

seq1  ACAGACAGGTCTCTGTACCGTGGAGTCACAACCTTTCCTCAAACCCACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTCTCTGTACCGTGGAGTCACAACCTTTCCTCAAACCCACGT  800

seq1  TGCCAGGGAAGAGACTGAAGCCCACAGGGCCCACCCCTAGCTAAGTTCTC  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGCCAGGGAAGAGACTGAAGCCCACA-GGCCCACCCCTAGCTAAGTTCTC  849

seq1  TCAGAATGTCTGAGACCCGAAAGCCCCACTCT-CCGGTGCTGTCTTTGCC  899
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAGAATGTCTGAGACCCGAAAGCCCCACTCTCCCGGTGCTGTCTTTGCC  899

seq1  TCACACATATACCTCTACCTAGCT-ACAGCTCTTGG-ACACATGGA--GA  945
      ||||||||||||||||| |||||| ||||||||||| |||||||||   |
seq2  TCACACATATACCTCTAACTAGCTAACAGCTCTTGGAACACATGGAAGAA  949

seq1  AATTCTG-AGAGTGACACA-CCTGTGCTGTCTCATACC-TAATAACTCAT  992
      ||||||| ||||||||||| |||||||||||||||||| |||||||||||
seq2  AATTCTGAAGAGTGACACACCCTGTGCTGTCTCATACCTTAATAACTCAT  999

seq1  GGTGCCACAGACTCAGCTAGAGCCAGGTGCTAGTCACCACCTGTGTGTGC  1042
      ||||||||| |||||||||||| || |||||||||||   ||||||||||
seq2  GGTGCCACAAACTCAGCTAGAG-CAAGTGCTAGTCACTCACTGTGTGTGC  1048

seq1  AGGTGCCCTCTCCTTGTGCCTGGAAGCAGGGTTTCACC--TCCCC-CCCC  1089
      ||||||||||||  || ||||||||||| || ||||||  ||||| ||||
seq2  AGGTGCCCTCTCTGTG-GCCTGGAAGCAAGGATTCACCCTTCCCCTCCCC  1097

seq1  CCATTTGCCTTTACCTCCCTTTATAGCCAGGAATACA--GTCTACCCTCC  1137
      | ||| |||||  ||||| ||||||||   |||||||  ||||||||  |
seq2  CAATTGGCCTTACCCTCCATTTATAGC--AGAATACAAGGTCTACCCCTC  1145

seq1  CTG-TCTACATCCTGAACACTGCCCATCTTTGTCCTTGGGCTTAG-AAAA  1185
      ||| ||||||| | || || |||| |||  ||||||||||||||| ||||
seq2  CTGTTCTACATTC-GACCA-TGCCAATC--TGTCCTTGGGCTTAGAAAAA  1191

seq1  CACC  1189
      ||||
seq2  CACC  1195

seq1: chr18_61279273_61280233
seq2: B6Ng01-246H23.g_68_1032 (reverse)

seq1  AACACAAAACCCTTCCTCATACGG-AACT-AAAAGCTGTCTCTGGTGCCC  48
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AACACAAAACCCTTCCTCATACGGAAACTAAAAAGCTGTCTCTGGTGCCC  50

seq1  CATAAGCACCAGGATCTCAGAGCTCTTTCTGCC-TTGACTGACAGGCCTC  97
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  CATAAGCACCAAGATCTCAGAGCTCTTTCTGCCTTTGACTGACAGGCCTC  100

seq1  ACCTCATGGTGGTCTAAGGCACCTCAGCTCTCTCTAC-AACACCATTTTC  146
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACCTCATGGTGGTCTAAGGCACCTCAGCTCTCTCTACAAACACCATTTTC  150

seq1  TGAATATATCACCCTGGGTACCGTCTCATTTCCCAT-CCAGGAAACTTAC  195
      |||||||||||||||||||||||||||||||||||| |||||||||||| 
seq2  TGAATATATCACCCTGGGTACCGTCTCATTTCCCATCCCAGGAAACTTA-  199

seq1  CTGCTTCTTATGTAGCCCAAAGCCAGGGGACCTGCAGCCTCAGGCTGGCC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCTTATGTAGCCCAAAGCCAGGGGACCTGCAGCCTCAGGCTGGCC  249

seq1  TTTTCTCCTTCACCCTTGGATGTCCATTGACTGAGTTGCTCCTGAAAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCCTTCACCCTTGGATGTCCATTGACTGAGTTGCTCCTGAAAGAA  299

seq1  AGACCTGAAAGAGGCAGTCTAGTTAGCAGCTCTCTTCTGGCCAACCTCTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGAAAGAGGCAGTCTAGTTAGCAGCTCTCTTCTGGCCAACCTCTT  349

seq1  TGTAGGTAGGGGACTTGGCCCCACCTGTCTTTATCCCCAGGTCTGAGTGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTAGGGGACTTGGCCCCACCTGTCTTTATCCCCAGGTCTGAGTGA  399

seq1  GACATGGCCTGTCTATGGAAGGGTTGTTTCTGCTAAGGGCTGAGTTGAGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCCTGTCTATGGAAGGGTTGTTTCTGCTAAGGGCTGAGTTGAGT  449

seq1  CATCCCCTTCTGTCCCCCAGAGAAACCACAACAGTGGGGAAGGCACAGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTTCTGTCCCCCAGAGAAACCACAACAGTGGGGAAGGCACAGGG  499

seq1  GAAGAGGAAAGGACCCGAGTCAGCTGGCCCCAGGGATAGGGAAAAGGTAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGAAAGGACCCGAGTCAGCTGGCCCCAGGGATAGGGAAAAGGTAG  549

seq1  GGAGGATGATGGGTAGAGAGAAGGGAAGGGTAGACTCAGAAAGAAACCAC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATGATGGGTAGAGAGAAGGGAAGGGTAGACTCAGAAAGAAACCAC  599

seq1  TGAACAGATTTTGGGCCCAGGCCTAAATTGAAGGAGGAGGGTCTGGAGAG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGATTTTGGGCCCAGGCCTAAATTGAAGGAGGAGGGTCTGGAGAG  649

seq1  CTTCCAGGAGAAATGCCCAGGTCTTTACCATCCCCAGGCTCAATACCTAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAGAAATGCCCAGGTCTTTACCATCCCCAGGCTCAATACCTAC  699

seq1  CCCACAGACCAAGGGCCTGATGGGGAGGGTGGCCAAGGTCTGATGTTCCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGACCAAGGGCCTGATGGGGAGGGTGGCCAAGGTCTGATGTTCCC  749

seq1  AAGCCCTCTTCAATCTCTGTCAAGGAATCAGTGGAGAGCCTCAACTTAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCTCTTCAATCTCTGTCAAGGAATCAGTGGAGAGCCTCAACTTAGA  799

seq1  GCTAGCATGAGCAACCAGTGAATTGATCTGCAGTGAGGATTTAGCTAGGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATGAGCAACCAGTGAATTGATCTGCAGTGAGGATTTAGCTAGGC  849

seq1  CCAGCTCCCAAGAAAGCAAAGCATTCCAGTCATCCCTCCTTCTAGGAAGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCCCAAGAAAGCAAAGCATTCCAGTCATCCCTCCTTCTAGGAAGG  899

seq1  GACCTCACAGGCCACTCTACCTTCACAAGGACAGGACCCCAGAGTCACCG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCACAGGCCACTCTACCTTCACAAGGACAGGACCCCAGAGTCACCG  949

seq1  GGGACGGAAAGAATTC  961
      ||||||||||||||||
seq2  GGGACGGAAAGAATTC  965