BAC Information

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BAC

Clone NameB6Ng01-246J19
Chromosome18 (Build37)
Map Location 41,826,709 - 41,827,798
singlet/doubletsinglet
Overlap genenone
Upstream geneEG225416, LOC677182
Downstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-246J19.bB6Ng01-246J19.g
ACCGA055181GA055182
length1,1001,163
definitionB6Ng01-246J19.b B6Ng01-246J19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaattttgccccattggtttgttgatttcttacttagatatagtt
ctagtatcatttaaagcatgaaatggtgtttttatcagtattataggatc
tcttgtctttaatgtaggaatgtttacatcttcaagcacttaaacataat
gtctgtggtatctaagctttgaaattttggtcttcaataactagcctgtt
acttagattaaatgtactaccgggtttactaagaactttgggagttcttt
gaaaccattcattcattcagtcagtcactcaaaaaatataatcactactt
atatctcaataactattcttagctctatggagatagacatggtctgtgat
gccataataattgtggtccaggttggaagaaagcaagtcatgagcaaaca
ataacaataaagtaaggtatgtgcttggttgccgatgtagagaacattct
gaaagcacagaagaagggagctgaaatgcacctgaaggggatcctcagct
ctctctctgtctctctgtccctgtccttgtctctgtctctctctctctct
gtctctctctgtctctctctttctctcagatggctgactgaaatatcaca
ataagcaggggttagtagggtaaaagatgagagaggaagagttgggccaa
gaagaatagggtgggaggtgaaagatggcaaattcctcatatgtgaggaa
ctatgtgaaaatttgaaggaatgggcatgaaataaacaagggatgtggaa
gagacatggcttgagaagagtattagtggcactatgaatctatttaaggg
ttttgtacataattttggatgtgatggaaaaccactgaagaatgtatctt
cagcagtgcccccattggctgctgagaagcattccctctgactttcccaa
ctcaacagagtgtagactgtctcagatgagaagactggagacagatcaag
agctgtgacattgtcacagtccacctaggggacagatgaagatggtgctg
ttcttgggcccggtggcccttgagatggctagacttggacgtaagaagga
agagacttgaaagtggactcagacaagacaatgccatgtctcttgtgtag

gaattcactgaaaatgaatgtacaacatacccaaacttatgagacacaat
ggaaaacagtgttaagggaaaagttcatagcactgtgtgcatttataaca
acaacaacaacaaaaatggagtgatctcatatcagcaacttatctgcaca
cctaaaagctatagaacaaaaagaagcaaacacactcaagaagaatagat
agcaggaaataatccatctcaaggctgaaacctataaataaaaacaaaaa
taacaatacaacggatcaatgaaaccaagaagaactgattctttgagaaa
agcaacaaggtagattaacccttagcagaactacctaacaagcagagaga
caagatccaaatgaacaaaatcagaaatgaaaattgggacaaaacagcag
acagagaggaaatccaaagaatcattaggtgttacttcaaaagcctatac
cccatagaattggaaaatctaaatgaaatgaacaattttctggatagatt
caatttaccaaagacaaatccagatcaggtaaatatctaaatacttctat
aagccctaaggaaatagaagcagtcattaaaagtctcccaaccaagaaag
cttaaggccagatgattttagcagagttctatggactttcaaagaagacc
taataccaatactcctcaagctattccacaaaacagaaagagaaggaaca
ttgccaaactcattttatgaggccacagatggcctgatacctaaaccaca
cacagactcaacaaaaaagagaatttcagacctatttcccttatgaacat
tgatgtaaaaatactaaataaaatattcgcaaattaaatccaagaacaca
tccaaaacatgagaaagtaggactcatcccagggatataggggtggttca
atatacaaaaattcatcaatgtaatctaccatataacaagctgaggggaa
aaaaatcacatgatcatctcattagatgatcagaaaacctttgacaaaat
caacacccttcatgttaaaagtctggagaatcagaaccagatgcatacct
aagatattaaagcatattacagcaggcccaagagcacatcaatgaatggc
aagacttagcaatcacttaaatcagacacagtgtctccacactctctcct
ggtgtaatgcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_41826709_41827798
seq2: B6Ng01-246J19.b_45_1144 (reverse)

seq1  CTACACAAGAGACATGGGCATTGTCTTGTCTGAGTCCACTTTCAAGTCTC  50
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTACACAAGAGACAT-GGCATTGTCTTGTCTGAGTCCACTTTCAAGTCTC  49

seq1  TTCC-TCTTACGTCC-AGTCTTAGCCATCCTCAGGGCCAC--GGCCCA--  94
      |||| |||||||||| |||| ||||||||   ||||||||  ||||||  
seq2  TTCCTTCTTACGTCCAAGTC-TAGCCATCTCAAGGGCCACCGGGCCCAAG  98

seq1  GACAGCACCATCTTCATCTGTCCCCT-GGT-GACTGTGACAATGTCACAG  142
       ||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  AACAGCACCATCTTCATCTGTCCCCTAGGTGGACTGTGACAATGTCACAG  148

seq1  CTCTTGATCTGTCTCCAGTCTTCTCATCTGAGACAGTCTACACTCTGTTG  192
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGATCTGTCTCCAGTCTTCTCATCTGAGACAGTCTACACTCTGTTG  198

seq1  AGTTGGG-AAGTCAGA-GGAATGCTTCTCAGCAGCCAATGGGGGCACTGC  240
      ||||||| |||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTGGGAAAGTCAGAGGGAATGCTTCTCAGCAGCCAATGGGGGCACTGC  248

seq1  TG-AGATACATTCTTCAGTGGTTTTCCATCACATCCAAAATTATGTACAA  289
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATACATTCTTCAGTGGTTTTCCATCACATCCAAAATTATGTACAA  298

seq1  AACCCTT-AATAGATTCATAGTGCCACTAATACTCTTCTCAAGCCATGTC  338
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTTAAATAGATTCATAGTGCCACTAATACTCTTCTCAAGCCATGTC  348

seq1  TCTTCCACATCCCTTGTTTATTTCATGCCCATTCCTTCAAATTTTCACAT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCACATCCCTTGTTTATTTCATGCCCATTCCTTCAAATTTTCACAT  398

seq1  AGTTCCTCACATATGAGGAATTTGCCATCTTTCACCTCCCACCCTATTCT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTCACATATGAGGAATTTGCCATCTTTCACCTCCCACCCTATTCT  448

seq1  TCTTGGCCCAACTCTTCCTCTCTCATCTTTTACCCTACTAACCCCTGCTT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCCAACTCTTCCTCTCTCATCTTTTACCCTACTAACCCCTGCTT  498

seq1  ATTGTGATATTTCAGTCAGCCATCTGAGAGAAAGAGAGAGACAGAGAGAG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGATATTTCAGTCAGCCATCTGAGAGAAAGAGAGAGACAGAGAGAG  548

seq1  ACAGAGAGAGAGAGAGACAGAGACAAGGACAGGGACAGAGAGACAGAGAG  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGAGAGAGAGACAGAGACAAGGACAGGGACAGAGAGACAGAGAG  598

seq1  AGAGCTGAGGATCCCCTTCAGGTGCATTTCAGCTCCCTTCTTCTGTGCTT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGGATCCCCTTCAGGTGCATTTCAGCTCCCTTCTTCTGTGCTT  648

seq1  TCAGAATGTTCTCTACATCGGCAACCAAGCACATACCTTACTTTATTGTT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATGTTCTCTACATCGGCAACCAAGCACATACCTTACTTTATTGTT  698

seq1  ATTGTTTGCTCATGACTTGCTTTCTTCCAACCTGGACCACAATTATTATG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTGCTCATGACTTGCTTTCTTCCAACCTGGACCACAATTATTATG  748

seq1  GCATCACAGACCATGTCTATCTCCATAGAGCTAAGAATAGTTATTGAGAT  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACAGACCATGTCTATCTCCATAGAGCTAAGAATAGTTATTGAGAT  798

seq1  ATAAGTAGTGATTATATTTTTTGAGTGACTGACTGAATGAATGAATGGTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGTGATTATATTTTTTGAGTGACTGACTGAATGAATGAATGGTT  848

seq1  TCAAAGAACTCCCAAAGTTCTTAGTAAACCCGGTAGTACATTTAATCTAA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAACTCCCAAAGTTCTTAGTAAACCCGGTAGTACATTTAATCTAA  898

seq1  GTAACAGGCTAGTTATTGAAGACCAAAATTTCAAAGCTTAGATACCACAG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGGCTAGTTATTGAAGACCAAAATTTCAAAGCTTAGATACCACAG  948

seq1  ACATTATGTTTAAGTGCTTGAAGATGTAAACATTCCTACATTAAAGACAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGTTTAAGTGCTTGAAGATGTAAACATTCCTACATTAAAGACAA  998

seq1  GAGATCCTATAATACTGATAAAAACACCATTTCATGCTTTAAATGATACT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTATAATACTGATAAAAACACCATTTCATGCTTTAAATGATACT  1048

seq1  AGAACTATATCTAAGTAAGAAATCAACAAACCAATGGGGCAAAATTGAAT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTATATCTAAGTAAGAAATCAACAAACCAATGGGGCAAAATTGAAT  1098

seq1  TC  1090
      ||
seq2  TC  1100