BAC Information

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BAC

Clone NameB6Ng01-249J03
Chromosome18 (Build37)1 (Build37)
Map Location 88,450,263 - 88,450,682195,106,993 - 195,107,402
singlet/doubletsingletsinglet
Overlap genenone
Upstream genePpia-ps18_1039.1, LOC329008, LOC100039961
Downstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn, Cd226
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249J03.bB6Ng01-249J03.g
ACCGA057356GA057357
length1,018404
definitionB6Ng01-249J03.b B6Ng01-249J03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,450,263 - 88,450,682)(195,106,993 - 195,107,402)
sequence
gaattccaagagccctttagaactgtgaacattctttgcctctgtaccaa
acggcaacaagcacgtacttgttcataaaggttattgtggaatctaagat
tcaccaatggaccaataattttcctcaaagattccttgaagaactaggaa
ctgtcaggctccacagtagaagataaaagttttgcaaaattctgggactg
gagaggttgttcagtggttagaacaatgctgctcttgcagaggaccttgg
ctctcttctcagcacccacatggtggctcacagccatctgtaactccagt
taaaagggtatcaatgcccttttctgacctctgtgttcactgcacttata
tggctcacatgcacacatgcaaatgcatacacataacataaataataata
aatctaaaaaaacttcccagaatgcaattttcaattgaaaatacagtttc
acgaagcaagagtgttgctagttgttgacttcaaactgactagactatgc
agtataactattaaacatactagctgaatacccacccctaatgggtgaca
gtttactagcaatcctttctgggaaaggcatgtagcctgacccaccacag
aagccatcatacacccatacaggcagctgttcatggtgctttgatgagca
gcagaggaatccgtgaaatcattcttatattgttagacaaaatagttttt
aatcataaaggaagtcttaagggaaactaactttgttttcttgttgttgt
tgtttgagtttttattgttgcttgtttgtttattttggggctaggatccc
atggagcctagcttgtgatggaggatggcccttgaatttttgtttccctg
cctctatctcccaagtaatggtgtcacaggcatgtgccaccacatggcta
tgttttatgcaatggtaggagttgaacccagggcttagttgcatgtaggg
taagcgactccccagctcagtcaatcttaaaacaacacgaaaataaacag
caacggccagggtggtta

agcacctgctgactgaacttgcatctgagttaaactaccacaactccttt
tcatttgttttcaaagacagtgtctcctgaatcctggactagccttgaac
tccctacatacctgagggtaaccttgaactcctgatcctctggcttccac
ctcccaaatgctgggattattcatgtattttagaacccagaaaagctata
caccctaatgaggtatttagtcataatttactatgtcctgaagctacttg
tagctgtagttgattaatctgctctccctccctggcagcggctaagagag
ttccttgctagtcatcccaatgctttggattctttaatgaaagacacaca
cacacacacacacacacacacacacacacacacacgggggagggggtggg
gtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_88450263_88450682
seq2: B6Ng01-249J03.b_306_794

seq1  CAGCAACCACATGGTGGCTCACAACCATCTGT------------AATGAG  38
      ||||| ||||||||||||||||| ||||||||            || |  
seq2  CAGCACCCACATGGTGGCTCACAGCCATCTGTAACTCCAGTTAAAAGGGT  50

seq1  ATCTGATGCCCTTTTCTGA----TGTGT--------CTGATGATAGCT-A  75
      |||  ||||||||||||||    |||||        || || || ||| |
seq2  ATC-AATGCCCTTTTCTGACCTCTGTGTTCACTGCACTTAT-ATGGCTCA  98

seq1  CAGTG------TGCTTATGTATA--------ATAAATA-----AAATCTT  106
      || ||      |||  ||| |||        |||||||     |||||| 
seq2  CA-TGCACACATGCAAATGCATACACATAACATAAATAATAATAAATCTA  147

seq1  TTAAAA--------AATACAAATATGTAT---AGATCCAGATACAGGTAA  145
        ||||        ||| ||| | |  ||   | || ||| | || | | 
seq2  AAAAAACTTCCCAGAATGCAATTTTCAATTGAAAATACAGTTTCACGAAG  197

seq1  CTAAAATGTTCC----------------ATTGCATAG---TTTCGTTAAA  176
      | | | |||| |                | ||  |||    | |  || |
seq2  CAAGAGTGTTGCTAGTTGTTGACTTCAAACTGACTAGACTATGCAGTATA  247

seq1  GGTAATATA-ATAC-AG-TGAAT--CCTCCCATAGGATGTTATTCTTTCA  221
        || || | |||| || |||||  || ||| ||    || |   |||  
seq2  ACTATTAAACATACTAGCTGAATACCCACCCCTAATGGGTGACAGTTTAC  297

seq1  AAACAA--ATTTC----AAATATATATTTCCAGTAGGTTAAGATGGGACT  265
       | |||   ||||    |||   ||       ||||  |       ||| 
seq2  TAGCAATCCTTTCTGGGAAAGGCAT-------GTAGCCT-------GACC  333

seq1  TAGCTTGTTGTCTGTAATAAAGCCACTGGTGACCTGATGACTTTTCA-GG  314
       | |       |  | ||| | |||      ||  |  | || |||| ||
seq2  CACCACAGAAGCCATCATACACCCA-----TACAGGCAG-CTGTTCATGG  377

seq1  TCTTATTGACCAGTAACACTGTAA---GTCACATCATTCAATTTGGTATT  361
      |  | ||||  || | ||  | ||   || | |||||||       ||| 
seq2  TGCT-TTGATGAGCAGCAGAGGAATCCGTGAAATCATTC------TTATA  420

seq1  TTGCT-------TTGGCTCTTCCTGGATTCTTCAAATAATTCTTGTGTG-  403
      ||| |        | | | ||     | || | ||  || ||||  | | 
seq2  TTGTTAGACAAAATAGTTTTT-----AATCATAAAGGAAGTCTTAAGGGA  465

seq1  -------TTTGTTTTCTTGTTGTT  420
             |||||||||||||||||
seq2  AACTAACTTTGTTTTCTTGTTGTT  489


seq1: chr1_195106993_195107402
seq2: B6Ng01-249J03.g_68_477

seq1  GAATTCAGCACCTGCTGACTGAACTTGCATCTGAGTTAAACTACCACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCACCTGCTGACTGAACTTGCATCTGAGTTAAACTACCACAAC  50

seq1  TCCTTTTCATTTGTTTTCAAAGACAGTGTCTCCTGAATCCTGGACTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTCATTTGTTTTCAAAGACAGTGTCTCCTGAATCCTGGACTAGCC  100

seq1  TTGAACTCCCTACATACCTGAGGGTAACCTTGAACTCCTGATCCTCTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCCCTACATACCTGAGGGTAACCTTGAACTCCTGATCCTCTGGC  150

seq1  TTCCACCTCCCAAATGCTGGGATTATTCATGTATTTTAGAACCCAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCCCAAATGCTGGGATTATTCATGTATTTTAGAACCCAGAAAA  200

seq1  GCTATACACCCTAATGAGGTATTTAGTCATAATTTACTATGTCCTGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATACACCCTAATGAGGTATTTAGTCATAATTTACTATGTCCTGAAGC  250

seq1  TACTTGTAGCTGTAGTTGATTAATCTGCTCTCCCTCCCTGGCAGCGGCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTAGCTGTAGTTGATTAATCTGCTCTCCCTCCCTGGCAGCGGCTA  300

seq1  AGAGAGTTCCTTGCTAGTCATCCCAATGCTTTGGATTCTTTAATGAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTCCTTGCTAGTCATCCCAATGCTTTGGATTCTTTAATGAAAGA  350

seq1  CACACACACACACACACACACACACACACACACACACACACGGGGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACACACGGGGGAGGG  400

seq1  GGTGGGGTGG  410
      ||||||||||
seq2  GGTGGGGTGG  410


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