BAC Information

Click to search

BAC

Clone NameB6Ng01-250F06
Chromosome18 (Build37)
Map Location 85,754,957 - 85,930,350
singlet/doubletdoublet
Overlap geneLOC665382
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-250F06.bB6Ng01-250F06.g
ACCGA057905GA057906
length1,1871,184
definitionB6Ng01-250F06.b B6Ng01-250F06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,754,957 - 85,756,142)(85,929,177 - 85,930,350)
sequence
gaattccctagtcctattggttctattgtccactctaatcagctccctaa
agagtgttgttttgaagtcttgtggtcctgtttctaatttcctggcctat
atttacttccacatggatacatatatttaagagtttaaggcttgttgctg
ggggagaatatattgtatttgtctttctgaggtttgatcaccttgcttac
tatgttttccagtcccatccatctttctgcaagttcaaaatttcatcttt
atgactgaaaaaaaattacaatgtaaatatgcaccatgtttttagtacct
attgttctgttgataagcatcaatactggtgacaaatataggcaagggca
tggggaaagaggaacatttaatctctatcagtggatgtacacttgtacag
taattgtcaaaattagcgtggagaatccttaactacatgaaaatggaacc
accatttgactcagcaatgttgcttcttggcacatatttaaaatattcta
cattatattacagagttatatgtacaactatgattatggctgccatagtt
aacaatcagaagaaaatgatataaatgcattcctttgtaaaaggtacaaa
actactttgaataaagaaagtatctctcagcatgtttgcaaatactctct
gactaaaactgtgcaccattttagtagaatgcagtgtcatgagaatggca
ggttagggatcgacttagctcatgttatggaggagaacataagatacaga
tactatccagaggaagaaacttttatggaaggttcaaccatttactcagt
atttttctatgtaatgtaaagtgctgcaaactaggatgtcaaggtttgtc
tttttagtgtacaggacagtgccaattgagcattatttagtaatgccatg
aaatatgctctataaagaaaaaaattaagttaaaggggtaattcaatagt
ggcttctgaataaatttcattatttgatttaatattctgttttaaagttt
tagaatttccatgtactggataccattggaggacccagaacttaattcat
gccaatcatgagatggagcttaatacattgtagcactttataggaaatga
aatgaagtagaaataattcagcctaactcaggttatggctatgccagcta
gatatttttaacgtggttaactaacctaagttccatc
gaattctctgtgaacctgcatcttaatccccatggagctatgcctgctag
ggaagcaaacagctcacaaactgtgagaaagcttcagttttgcctttaag
gaaaacattctcttcacctcccaagatactttttgctataaaagattttg
aaacaatcctaaacaatgatgaaatgggactgacggaaccaaatgtactt
gtgtacagaacttgattatggccaagctgaaaggcaggttataaatactt
tcatgtccttgaagaactgaccactcagtcctacatgttgatttcatttc
tgaacacaaacagaactgagctgctgaacacagatagaactgggtgtttt
ccttctatgcgtacccagaaactgcaggtaaaggactatagagactccct
gccttgaatgtcttagtaaggcttgttgacacagtctgctttaatagata
gttctgcaaaggaggtatgagtgtctatatcatgtggtctgtttgtttca
gcaccgtggtgtttagtctgcctaatgtaagcatgtgcctgacttgtgat
aaaatatctgtcagttccactgaaagcaaaatgccaattctaaaattgta
tgtattcaccagtctgaactaacacattaaaaaaggattttcaaatttct
ttaaataccattaaataaagaactaatagactttctcctactatatagtc
acctcaatgccttgagaaacatgaagcaaaatattgaaaaaagaaatgga
tgtaatttaaaatcataaactgcaaaatcagtgatgtccggttttatagg
gatagtagcaggtaaaagatgttttatattttaagattctatgttaagtg
tttttattaacttaaattttttgagaaatgtacaaactagtaatgatgcc
catgtaaatgagaactctatttttctatgtgtgattaaaactttaaaaat
ctaatatgaaaagattcaagaaataaccaacaaaatgtagtattgaacct
tctggaacaaacatttaacatgaaaagaaattcaaagaggtatttttagt
ttattgtggaagaagatttaataattacaagtttagctacctcaggaatt
aggtcagagaaattatatgatgaattaaattgaaatttgaacctgcattt
atttatatatgcacggaagggcagaacaatgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85754957_85756142
seq2: B6Ng01-250F06.b_43_1229

seq1  GAATTCCCTAGTCCTATTGGTTCTATTGTCCACTCTAATCAGCTCCCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGTCCTATTGGTTCTATTGTCCACTCTAATCAGCTCCCTAA  50

seq1  AGAGTGTTGTTTTGAAGTCTTGTGGTCCTGTTTCTAATTTCCTGGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTGTTTTGAAGTCTTGTGGTCCTGTTTCTAATTTCCTGGCCTAT  100

seq1  ATTTACTTCCACATGGATACATATATTTAAGAGTTTAAGGCTTGTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTTCCACATGGATACATATATTTAAGAGTTTAAGGCTTGTTGCTG  150

seq1  GGGGAGAATATATTGTATTTGTCTTTCTGAGGTTTGATCACCTTGCTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAATATATTGTATTTGTCTTTCTGAGGTTTGATCACCTTGCTTAC  200

seq1  TATGTTTTCCAGTCCCATCCATCTTTCTGCAAGTTCAAAATTTCATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTCCAGTCCCATCCATCTTTCTGCAAGTTCAAAATTTCATCTTT  250

seq1  ATGACTGAAAAAAAATTACAATGTAAATATGCACCATGTTTTTAGTACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTGAAAAAAAATTACAATGTAAATATGCACCATGTTTTTAGTACCT  300

seq1  ATTGTTCTGTTGATAAGCATCAATACTGGTGACAAATATAGGCAAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTCTGTTGATAAGCATCAATACTGGTGACAAATATAGGCAAGGGCA  350

seq1  TGGGGAAAGAGGAACATTTAATCTCTATCAGTGGATGTACACTTGTACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAAAGAGGAACATTTAATCTCTATCAGTGGATGTACACTTGTACAG  400

seq1  TAATTGTCAAAATTAGCGTGGAGAATCCTTAACTACATGAAAATGGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTCAAAATTAGCGTGGAGAATCCTTAACTACATGAAAATGGAACC  450

seq1  ACCATTTGACTCAGCAATGTTGCTTCTTGGCACATATTTAAAATATTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTTGACTCAGCAATGTTGCTTCTTGGCACATATTTAAAATATTCTA  500

seq1  CATTATATTACAGAGTTATATGTACAACTATGATTATGGCTGCCATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATATTACAGAGTTATATGTACAACTATGATTATGGCTGCCATAGTT  550

seq1  AACAATCAGAAGAAAATGATATAAATGCATTCCTTTGTAAAAGGTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCAGAAGAAAATGATATAAATGCATTCCTTTGTAAAAGGTACAAA  600

seq1  ACTACTTTGAATAAAGAAAGTATCTCTCAGCATGTTTGCAAATACTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTGAATAAAGAAAGTATCTCTCAGCATGTTTGCAAATACTCTCT  650

seq1  GACTAAAACTGTGCACCATTTTAGTAGAATGCAGTGTCATGAGAATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAACTGTGCACCATTTTAGTAGAATGCAGTGTCATGAGAATGGCA  700

seq1  GGTTAGGGATCGACTTAGCTCATGTTATGGAGGAGAACATAAGATACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGATCGACTTAGCTCATGTTATGGAGGAGAACATAAGATACAGA  750

seq1  TACTATCCAGAGGAAGAAACTTTTATGGAAGGTTCAACCATTTACTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCCAGAGGAAGAAACTTTTATGGAAGGTTCAACCATTTACTCAGT  800

seq1  ATTTTTCTATGTAATGTAAAGTGCTGCAAACTAGGATGTCAAGGTTTGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTATGTAATGTAAAGTGCTGCAAACTAGGATGTCAAGGTTTGTC  850

seq1  TTTTTAGTGTACAGGACAGTGCCAATTGAGCATTATTTAGTAATGCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGTGTACAGGACAGTGCCAATTGAGCATTATTTAGTAATGCCATG  900

seq1  AAATATGCTCTATAAAGAAAAAAATTAAGTT-AAGGGGTAATTCAATAGT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATATGCTCTATAAAGAAAAAAATTAAGTTAAAGGGGTAATTCAATAGT  950

seq1  GGCTTCTGAATAAATTTCATTATTTGATTTAATATTCTGTTTTAAAGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGAATAAATTTCATTATTTGATTTAATATTCTGTTTTAAAGTTT  1000

seq1  TAGAATTTCCATGTACTGGATACCATTTGGAGGACCCAGAACTTTAATTC  1049
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TAGAATTTCCATGTACTGGATACCA-TTGGAGGACCCAGAAC-TTAATTC  1048

seq1  ATGCCAATCATGAGAT-GAGCTT-ATACATTGTAGCACTTTATAGGGAAA  1097
      |||||||||||||||| |||||| |||||||||||||||||||| |||||
seq2  ATGCCAATCATGAGATGGAGCTTAATACATTGTAGCACTTTATA-GGAAA  1097

seq1  TGAAATGAGGTAGAAATAAATCAG-CTAACTCA-GTTATGGCTATG-CAG  1144
      |||||||| |||||||||| |||| |||||||| |||||||||||| |||
seq2  TGAAATGAAGTAGAAATAATTCAGCCTAACTCAGGTTATGGCTATGCCAG  1147

seq1  CTAGATATTTTTAAAATGTGGTTTAACTACACTAAG-TCCATC  1186
      ||||||||||||  || |||| |||||||  ||||| ||||||
seq2  CTAGATATTTTT--AACGTGG-TTAACTAACCTAAGTTCCATC  1187

seq1: chr18_85929177_85930350
seq2: B6Ng01-250F06.g_69_1252 (reverse)

seq1  ACACATTG-TCTGCCC-TCTGTGCATATTAAAATTAAATGCAGGTCTACA  48
      |||||||| ||||||| || ||||||| || || |||||||||||  | |
seq2  ACACATTGTTCTGCCCTTCCGTGCATA-TATAAATAAATGCAGGTTCAAA  49

seq1  TTTCTATT--ATTCATCCTTGTATTTCTCTGGCCTTATTTCCTGAGGTAG  96
      |||| |||  ||||||| |   ||||||||| || || ||||||||||||
seq2  TTTCAATTTAATTCATCATATAATTTCTCTGACC-TAATTCCTGAGGTAG  98

seq1  CTTAACTTGTAATTATTAAATCTTCTT-CACATTAACCT-AAAATACCTC  144
      || |||||||||||||||||||||||| |||| ||| || ||||||||||
seq2  CTAAACTTGTAATTATTAAATCTTCTTCCACAATAAACTAAAAATACCTC  148

seq1  TCTGTAATTTC-TTTCATGTT-AATGTTCTGTTCCAGAAGTTTCAATTAC  192
      | || |||||| ||||||||| |||||| ||||||||||| ||||| |||
seq2  TTTG-AATTTCTTTTCATGTTAAATGTT-TGTTCCAGAAGGTTCAA-TAC  195

seq1  TACATTTTGTTGGATTATTCTTGAATCTTTTCATATTAGATTTTTAAAGT  242
      ||||||||||||| |  |||||||||||||||||||||||||||||||||
seq2  TACATTTTGTTGGTTATTTCTTGAATCTTTTCATATTAGATTTTTAAAGT  245

seq1  TTTAATCACACATAG-AAAATAGAGTTTCTCATTTACAT-GGCATCATTA  290
      ||||||||||||||| ||||||||| ||||||||||||| ||||||||||
seq2  TTTAATCACACATAGAAAAATAGAG-TTCTCATTTACATGGGCATCATTA  294

seq1  CTAGTTTGTACATTTCTC-AAAAATTTAAG-TAATAAAAACACTTAACAT  338
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CTAGTTTGTACATTTCTCAAAAAATTTAAGTTAATAAAAACACTTAACAT  344

seq1  AGAATCTTAAAATAT-AAACATC-TTTACCTGCTACTATCCCTATAAAAC  386
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AGAATCTTAAAATATAAAACATCTTTTACCTGCTACTATCCCTATAAAAC  394

seq1  CGGACATCACTGATTTTGCAGTTTATGATTTTAAATTACATCCATTTCTT  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGACATCACTGATTTTGCAGTTTATGATTTTAAATTACATCCATTTCTT  444

seq1  TTTTCAATATTTTGCTTCATGTTTCTCAAGGCATTGAGGTGACTATATAG  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATATTTTGCTTCATGTTTCTCAAGGCATTGAGGTGACTATATAG  494

seq1  TAGGAGAAAGTCTATTAGTTCTTTATTTAATGGTATTTAAAG-AATTTG-  534
      |||||||||||||||||||||||||||||||||||||||||| |||||| 
seq2  TAGGAGAAAGTCTATTAGTTCTTTATTTAATGGTATTTAAAGAAATTTGA  544

seq1  AAATCCTTTTTTAATGTGTTAGTTCAGACTGGTGAATACATACAATTTTA  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTTTTTAATGTGTTAGTTCAGACTGGTGAATACATACAATTTTA  594

seq1  GAATTGGCATTTTGCTTTCAGTGGAACTGACAGATATTTTATCACAAGTC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGCATTTTGCTTTCAGTGGAACTGACAGATATTTTATCACAAGTC  644

seq1  AGGCACATGCTTACATTAGGCAGACTAAACACCACGGTGCTGAAACAAAC  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGCTTACATTAGGCAGACTAAACACCACGGTGCTGAAACAAAC  694

seq1  AGACCACATGATATAGACACTCATACCTCCTTTGCAGAACTATCTATTAA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACATGATATAGACACTCATACCTCCTTTGCAGAACTATCTATTAA  744

seq1  AGCAGACTGTGTCAACAAGCCTTACTAAGACATTCAAGGCAGGGAGTCTC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGTGTCAACAAGCCTTACTAAGACATTCAAGGCAGGGAGTCTC  794

seq1  TATAGTCCTTTACCTGCAGTTTCTGGGTACGCATAGAAGGAAAACACCCA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTCCTTTACCTGCAGTTTCTGGGTACGCATAGAAGGAAAACACCCA  844

seq1  GTTCTATCTGTGTTCAGCAGCTCAGTTCTGTTTGTGTTCAGAAATGAAAT  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATCTGTGTTCAGCAGCTCAGTTCTGTTTGTGTTCAGAAATGAAAT  894

seq1  CAACATGTAGGACTGAGTGGTCAGTTCTTCAAGGACATGAAAGTATTTAT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTAGGACTGAGTGGTCAGTTCTTCAAGGACATGAAAGTATTTAT  944

seq1  AACCTGCCTTTCAGCTTGGCCATAATCAAGTTCTGTACACAAGTACATTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCCTTTCAGCTTGGCCATAATCAAGTTCTGTACACAAGTACATTT  994

seq1  GGTTCCGTCAGTCCCATTTCATCATTGTTTAGGATTGTTTCAAAATCTTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCGTCAGTCCCATTTCATCATTGTTTAGGATTGTTTCAAAATCTTT  1044

seq1  TATAGCAAAAAGTATCTTGGGAGGTGAAGAGAATGTTTTCCTTAAAGGCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCAAAAAGTATCTTGGGAGGTGAAGAGAATGTTTTCCTTAAAGGCA  1094

seq1  AAACTGAAGCTTTCTCACAGTTTGTGAGCTGTTTGCTTCCCTAGCAGGCA  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGAAGCTTTCTCACAGTTTGTGAGCTGTTTGCTTCCCTAGCAGGCA  1144

seq1  TAGCTCCATGGGGATTAAGATGCAGGTTCACAGAGAATTC  1174
      ||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCCATGGGGATTAAGATGCAGGTTCACAGAGAATTC  1184