BAC Information

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BAC

Clone NameB6Ng01-251B22
Chromosome18 (Build37)1 (Build37)
Map Location 18,760,699 - 18,761,87013,369,600 - 13,369,919
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-251B22.bB6Ng01-251B22.g
ACCGA058475GA058476
length1,156979
definitionB6Ng01-251B22.b B6Ng01-251B22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,760,699 - 18,761,870)(13,369,600 - 13,369,919)
sequence
gaattccaaaatgggcacaaaaacttataagttcatgaggctagcatagg
gagcaggatttcaagttgacatcacaagaggtccatagagaagtcagttt
tacattaaaatttctgtctctagtggcatatttttgtttctaattctatt
agccagtcttcaccccattaaaattctgacacatctcagggaccatatgc
ttaaattatgagctcctggcattgcatttattgtttgaaccacaataaac
acaataattaaaagtcagtggacattttagtactaatttgatgttcagct
tctacaatgacatatgctccatcttgctctctatcatttctttcctttgc
tattactttgtgtctctatatttcataactgttacttgcaatatttactt
aagttcacattaaatatctttattcatgctataatatatagcatatattg
agaacattaagggctgtctaatttgtataaaatagaaattgtattacatg
agttcgatgaagaaaactctagtcatggtcaagtaacaaactctgaaaat
cagtatttgtatattttaaactgaaagaacataggaagataatcatactt
tcttacactccaaaaattaatcaaaagttttgatgaagcaatatctatta
aagaataacttttgaatctgagaagtcatctaacctaattatatgtaaca
ccatagaatccttaaaaacaaacaagttccttaactataaaagctgtcag
aaacatcagtgtaaggaaaggagaaaaaatacagttgaatctacccaaag
cttcatccacagacagctggtaccacttaatatgtgtcaacagctctggc
aagctcccagtccaggtcatgtctttatttggcaaacttactcttgtgca
cacagaatgctcgagggaatttgttgaaaatgattagtggcatatatttt
ttaaacatagcagctgtctatgatagtaatacaagtaggtctaaagcagg
ctagggaaaaccaaaaaagtataaactagtacgcaaattgacaatagtac
ccacagagatgtgaaaactataacacatcagtgattttcttatagcaaat
cttattattccgatctatgtaagcaagggagtggaaatggaagtctccag
actctt

gaattccaggacagccaggactacacagagaaaccctgtctcgaaaaaaa
aaacaaaaacaaaaactaaacaaaagaaagattctgaaatcaggttgtgg
tgtgtttcaactgacatactgtctatgtaaacacaggcaaattattccac
atctctgaaaatccagtccagtgagttggggaagcagaaggaaacagacc
cctcttcactacctgatgtaattgatgacatgtatgaatactaatacata
caaactcataaacaactatggttatttgaaggttgctgggtataagaaga
aacacataagtccgttgaatttctttctttgtatgaagaagaaacaatta
taaaacacttaagaataagtttactggaaagtgtacaaagaccgttgcat
tgattttaacaacttgttttttgtttttgtttttgtttttgttttagttt
ttgttttttgagaaagggtttctctgtatacccctggctgtcctggaact
cactctgtagactaggctggcctcaaactcagaaatctgcctgcttctgc
ctcccaagtgttgggattaaaagcctgtgccaccacgcccagcaacaact
ttttataagatatgttccaatctacatttcaaatgctatcccaaaagtcc
tctatacactacccctgccttgctccacaacccacccactcccgcttcca
ggacttggcattaccatgtactggggcatataatctttgcaagatcaagg
gcctctcctcccagtgatggccaattaggccatcttctgccacatataca
gctagagacacgagctcaggggatactggttagtttatattgctatcctt
cctgtagggttacagaacctttcaactccttgggtactttctctagcttc
ttcattggggggccttgtgttccatccaatagatgactgtgagcacatac
ttctgttttgccaggcactggcatagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18760699_18761870
seq2: B6Ng01-251B22.b_43_1198

seq1  GAATTCCAAAATGGGCACAAAAACTTATAAGTTCATGAGGCTAGCATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAATGGGCACAAAAACTTATAAGTTCATGAGGCTAGCATAGG  50

seq1  GAGCAGGATTTCAAGTTGACATCACAAGAGGTCCATAGAGAAGTCAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGATTTCAAGTTGACATCACAAGAGGTCCATAGAGAAGTCAGTTT  100

seq1  TACATTAAAATTTCTGTCTCTAGTGGCATATTTTTGTTTCTAATTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTAAAATTTCTGTCTCTAGTGGCATATTTTTGTTTCTAATTCTATT  150

seq1  AGCCAGTCTTCACCCCATTAAAATTCTGACACATCTCAGGGACCATATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGTCTTCACCCCATTAAAATTCTGACACATCTCAGGGACCATATGC  200

seq1  TTAAATTATGAGCTCCTGGCATTGCATTTATTGTTTGAACCACAATAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGAGCTCCTGGCATTGCATTTATTGTTTGAACCACAATAAAC  250

seq1  ACAATAATTAAAAGTCAGTGGACATTTTAGTACTAATTTGATGTTCAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATTAAAAGTCAGTGGACATTTTAGTACTAATTTGATGTTCAGCT  300

seq1  TCTACAATGACATATGCTCCATCTTGCTCTCTATCATTTCTTTCCTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATGACATATGCTCCATCTTGCTCTCTATCATTTCTTTCCTTTGC  350

seq1  TATTACTTTGTGTCTCTATATTTCATAACTGTTACTTGCAATATTTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACTTTGTGTCTCTATATTTCATAACTGTTACTTGCAATATTTACTT  400

seq1  AAGTTCACATTAAATATCTTTATTCATGCTATAATATATAGCATATATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACATTAAATATCTTTATTCATGCTATAATATATAGCATATATTG  450

seq1  AGAACATTAAGGGCTGTCTAATTTGTATAAAATAGAAATTGTATTACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTAAGGGCTGTCTAATTTGTATAAAATAGAAATTGTATTACATG  500

seq1  AGTTCGATGAAGAAAACTCTAGTCATGGTCAAGTAACAAACTCTGAAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCGATGAAGAAAACTCTAGTCATGGTCAAGTAACAAACTCTGAAAAT  550

seq1  CAGTATTTGTATATTTTAAACTGAAAGAACATAGGAAGATAATCATACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTGTATATTTTAAACTGAAAGAACATAGGAAGATAATCATACTT  600

seq1  TCTTACACTCCAAAAATTAATCAAAAGTTTTGATGAAGCAATATCTATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACACTCCAAAAATTAATCAAAAGTTTTGATGAAGCAATATCTATTA  650

seq1  AAGAATAACTTTTGAATCTGAGAAGTCATCTAACCTAATTATATGTAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAACTTTTGAATCTGAGAAGTCATCTAACCTAATTATATGTAACA  700

seq1  CCATAGAATCCTTAAAAACAAACAAGTTCCTTAACTATAAAAGCTGTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGAATCCTTAAAAACAAACAAGTTCCTTAACTATAAAAGCTGTCAG  750

seq1  AAACATCAGTGTAAGGAAAGGAGAAAAAATACAGTTGAATCTACCCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCAGTGTAAGGAAAGGAGAAAAAATACAGTTGAATCTACCCAAAG  800

seq1  CTTCATCCACAGACAGCTGGTACCACTTAATATGTGTCAACAGCTCTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCACAGACAGCTGGTACCACTTAATATGTGTCAACAGCTCTGGC  850

seq1  AAGCTCCCAGTCCAGGTCATGTCTTTATTTGGCAAACTTACTCTTGTGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCAGTCCAGGTCATGTCTTTATTTGGCAAACTTACTCTTGTGCA  900

seq1  CACAGAATGCTCGAGGGAATTTGTTGAAAATGATTAGTGGCATATATTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATGCTCGAGGGAATTTGTTGAAAATGATTAGTGGCATATATTTT  950

seq1  TTAAACATAGCAGCTGTCTATGATAGTAATACAAGTAGGTCTAAAAGCAG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TTAAACATAGCAGCTGTCTATGATAGTAATACAAGTAGGTCT-AAAGCAG  999

seq1  GCTAGGGAAAACCAAAAAAAAGTATAAAACTAAGTAAGGCAAAATTGACA  1050
      |||||||||||||  |||||||||| ||||| |||| |   |||||||||
seq2  GCTAGGGAAAACC--AAAAAAGTAT-AAACT-AGTACG--CAAATTGACA  1043

seq1  AATAAGTAACCCACAGGAGAATGTGAAAAACTATAACACATCAGTTGGAA  1100
      |   ||| ||||||| ||| ||||| |||||||||||||||||||  || 
seq2  A--TAGT-ACCCACA-GAG-ATGTG-AAAACTATAACACATCAGT--GAT  1085

seq1  TTTTCTATAGCAAATCT--ATATTCAGATCTATGTAAAAGCCA-GGAGTG  1147
      |||  ||||||||||||   ||||| |||||||||  |||| | ||||||
seq2  TTTCTTATAGCAAATCTTATTATTCCGATCTATGT--AAGCAAGGGAGTG  1133

seq1  GATAGGAAAAGTCTCACAGACTCTT  1172
      || | |  ||||||| |||||||||
seq2  GAAATG-GAAGTCTC-CAGACTCTT  1156


seq1: chr1_13369600_13369919
seq2: B6Ng01-251B22.g_144_462

seq1  AAGATTCTGAAATCAGGTTGTGGTGTGTTTCAACCCTTATACTGTCTGTG  50
      ||||||||||||||||||||||||||||||||||    ||||||||| ||
seq2  AAGATTCTGAAATCAGGTTGTGGTGTGTTTCAACTGACATACTGTCTATG  50

seq1  TAAACACAGGCAAATTATTCCACATCTCTGAAAATCCAGTCCAGTGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACAGGCAAATTATTCCACATCTCTGAAAATCCAGTCCAGTGAGTT  100

seq1  GGGGAAGCAAAAGGAAACAGACCCCCTCTTCACTCCCTGATGGAATTGAT  150
      ||||||||| ||||||||||| |||||||||||| ||||||| |||||||
seq2  GGGGAAGCAGAAGGAAACAGA-CCCCTCTTCACTACCTGATGTAATTGAT  149

seq1  AGCATGTATGAATACTAATACATACAAACTCACAAACAACTACGGTGATT  200
        |||||||||||||||||||||||||||||| ||||||||| ||| |||
seq2  GACATGTATGAATACTAATACATACAAACTCATAAACAACTATGGTTATT  199

seq1  TGACGGTTGCTGGGCATAAGAGCAAACACAGAAGTCAGTTGAATTTCTTT  250
      ||| |||||||||| ||||||  ||||||| ||||| |||||||||||||
seq2  TGAAGGTTGCTGGGTATAAGAAGAAACACATAAGTCCGTTGAATTTCTTT  249

seq1  CTTTGTATGAAGAAGAAACAATTCTAAAACACTTAAGAATAAGTTTACTG  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTGTATGAAGAAGAAACAATTATAAAACACTTAAGAATAAGTTTACTG  299

seq1  GAAAATGTACAAAGACCGTT  320
      |||| |||||||||||||||
seq2  GAAAGTGTACAAAGACCGTT  319


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