BAC Information

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BAC

Clone NameB6Ng01-253N02
Chromosome18 (Build37)
Map Location 28,283,424 - 28,415,355
singlet/doubletdoublet
Overlap geneEG271505
Upstream geneEG665646
Downstream geneEG625997, BC051408, LOC100040930
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-253N02.bB6Ng01-253N02.g
ACCGA060446GA060447
length1,155816
definitionB6Ng01-253N02.b B6Ng01-253N02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,283,424 - 28,284,593)(28,414,548 - 28,415,355)
sequence
gaattctaccttagatataatgaaatgtactctccaacacatggtatttg
gttatgtctcaagtagcagcatcattaaaaaacattccccatgtttttgt
ttttttctctctttatacctgtagttgttgctacagttatggaaagtgat
tttatcttcaattagaaaattagagattttatgggaaaaggtagaattct
gaaatgtaatgaaatttaatgcctaattcagtaagagaggaatagtgaca
gaaaatgagatgcattagacaggaaacaatatataccgctattccaaagg
aatttttcctggacaagaataattttggaaaatcataaaaacataaagcg
tctactcttttcaagaaggaaaggattctctctttggtctaagttggagt
ggcagcagcgctgaggggcagcaaggagttgtggtaatagagaaaatcta
cagtaataaatacattgattaattaaaggataaaggcactcaaacttgtt
ttggggatttatagagagtatcaattgaccagggtacagtggaggtgaca
gggtatgtgtgacctatagagtgaatatgagttgatgctcaaatttgcga
aagaagcaatgaaatgtatgcatggtagttaagaacaataggcaattaaa
gaacgaatctgtgatccactgacattcctaggagagttcacatagtaggc
aatcaaaacatagagttataacattatgcaacacgtggaagtgaataatt
ccgccttgggtaatctaaactatgtgttcaaaaatatcatggaagaactt
agaaaattcctaggctcaacatgaaaacacatcttccagattctttgtga
tacgtgaaagaagccatacgagagtaattcatagataaatttgcctgtat
aaaaatgtgaaatattataactgcccaagccaagaatctcctgaaacaca
actttccaaaattagcaggtggagaataaaaagaaagatgtgatcagaaa
tttaatggaacaaatagaataacacaatcatgctaacagcagtgggttct
ttgactcataatggagagaagtaaacaggtgaggctagtaaaagtagaac
aagcaaacaacagcaaaatctacaatgaaacgactgctgtcatcaattga
gaaaa

gaattcattagaatccaattcctaatcacaaacagagcaggtatcttgca
tggcttttcattctttctctttatgcatcccattttttcaattctcataa
ttattgtttttttccatttttctattccttctctttctgtgattcacaat
ctaaaataacgaaataaaaaaaatgtcattacaataaatgactgggaagg
ataggaaaataggagcagatgagtctgtctctgaatctcaagctagacca
cacctctgtactgtgaacttacttaagaggttgtccacatctttggtaat
tacacctgcatcttaggtttgctgccatcatcactacctttaattctctt
agtctgtgatgcttattttttagggtgctttttcaagagctagcccttac
caaaaactaaatgaggtgaaaattattttaggagcaatctctatttttgc
tccacaatcttacctaagattagtagcaatgaagcagtcactctctttga
gaagcctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtctg
tgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgtctgtgtgtgttcttc
cctctagagaagtcaacattattgtctcatgatttaactttgtgatatct
gtgttcagtttttagggcattggtagtctaaaagtgtatgagcaaagaca
cttgaactcccatggggaatggtttacaattcaaagtgttgccaggaaga
ctgtgttagagatctgcagagagcacttagctttcctgagaactcagaca
tagctgttgggatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_28283424_28284593
seq2: B6Ng01-253N02.b_46_1200

seq1  GAATTCTACCTTAGATATAATGAAATGTACTCTCCAACACATGGTATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACCTTAGATATAATGAAATGTACTCTCCAACACATGGTATTTG  50

seq1  GTTATGTCTCAAGTAGCAGCATCATTAAAAAACATTCCCCATGTTTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGTCTCAAGTAGCAGCATCATTAAAAAACATTCCCCATGTTTTTGT  100

seq1  TTTTTTCTCTCTTTATACCTGTAGTTGTTGCTACAGTTATGGAAAGTGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTCTCTTTATACCTGTAGTTGTTGCTACAGTTATGGAAAGTGAT  150

seq1  TTTATCTTCAATTAGAAAATTAGAGATTTTATGGGAAAAGGTAGAATTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCAATTAGAAAATTAGAGATTTTATGGGAAAAGGTAGAATTCT  200

seq1  GAAATGTAATGAAATTTAATGCCTAATTCAGTAAGAGAGGAATAGTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTAATGAAATTTAATGCCTAATTCAGTAAGAGAGGAATAGTGACA  250

seq1  GAAAATGAGATGCATTAGACAGGAAACAATATATACCGCTATTCCAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGAGATGCATTAGACAGGAAACAATATATACCGCTATTCCAAAGG  300

seq1  AATTTTTCCTGGACAAGAATAATTTTGGAAAATCATAAAAACATAAAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCCTGGACAAGAATAATTTTGGAAAATCATAAAAACATAAAGCG  350

seq1  TCTACTCTTTTCAAGAAGGAAAGGATTCTCTCTTTGGTCTAAGTTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCTTTTCAAGAAGGAAAGGATTCTCTCTTTGGTCTAAGTTGGAGT  400

seq1  GGCAGCAGCGCTGAGGGGCAGCAAGGAGTTGTGGTAATAGAGAAAATCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCGCTGAGGGGCAGCAAGGAGTTGTGGTAATAGAGAAAATCTA  450

seq1  CAGTAATAAATACATTGATTAATTAAAGGATAAAGGCACTCAAACTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATAAATACATTGATTAATTAAAGGATAAAGGCACTCAAACTTGTT  500

seq1  TTGGGGATTTATAGAGAGTATCAATTGACCAGGGTACAGTGGAGGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGATTTATAGAGAGTATCAATTGACCAGGGTACAGTGGAGGTGACA  550

seq1  GGGTATGTGTGACCTATAGAGTGAATATGAGTTGATGCTCAAATTTGCGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTGTGACCTATAGAGTGAATATGAGTTGATGCTCAAATTTGCGA  600

seq1  AAGAAGCAATGAAATGTATGCATGGTAGTTAAGAACAATAGGCAATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAATGAAATGTATGCATGGTAGTTAAGAACAATAGGCAATTAAA  650

seq1  GAACGAATCTGTGATCCACTGACATTCCTAGGAGAGTTCACATAGTAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGAATCTGTGATCCACTGACATTCCTAGGAGAGTTCACATAGTAGGC  700

seq1  AATCAAAACATAGAGTTATAACATTATGCAACACGTGGAAGTGAATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAACATAGAGTTATAACATTATGCAACACGTGGAAGTGAATAATT  750

seq1  CCGCCTTGGGTAATCTAAACTATGTGTTCAAAAATATCATGGAAGAACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTTGGGTAATCTAAACTATGTGTTCAAAAATATCATGGAAGAACTT  800

seq1  AGAAAATTCCTAGGCTCAACATGAAAACACATCTTCCAGATTCTTTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTCCTAGGCTCAACATGAAAACACATCTTCCAGATTCTTTGTGA  850

seq1  TACGTGAAAGAAGCCATACGAGAGTAATTCATAGATAAATTTGCCTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTGAAAGAAGCCATACGAGAGTAATTCATAGATAAATTTGCCTGTAT  900

seq1  AAAAATGTGAAATATTATAACTGCCCAAGCCAAGAATCTCCTGAAACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTGAAATATTATAACTGCCCAAGCCAAGAATCTCCTGAAACACA  950

seq1  AC-TTCCAAAATTAGCAGGTGGAGATAAAAAAGAAAGATGTGATCAGAAA  999
      || ||||||||||||||||||||||  |||||||||||||||||||||||
seq2  ACTTTCCAAAATTAGCAGGTGGAGAATAAAAAGAAAGATGTGATCAGAAA  1000

seq1  -TTAATGGAACAAAATAGAATAACAACAAATCATGCTAACAGCAGTGGGT  1048
       |||||||||| |||||||||||||   ||||||||||||||||||||||
seq2  TTTAATGGAAC-AAATAGAATAACA--CAATCATGCTAACAGCAGTGGGT  1047

seq1  TCTTTGACTCCATAAATGAGAGAGGTAAACA-GTGAAGCTAGCCAAAAAG  1097
      ||||||||| |||||  |||||| ||||||| |||| |||||   |||||
seq2  TCTTTGACT-CATAATGGAGAGAAGTAAACAGGTGAGGCTAG--TAAAAG  1094

seq1  TAGAACAAAAGCAAACAAACAGCAAAAACCCAAACAAATGAAAACAGACT  1147
      ||||||  |||||||| |||||||||| |    || |||||||   ||||
seq2  TAGAAC--AAGCAAAC-AACAGCAAAATC---TAC-AATGAAA--CGACT  1135

seq1  GCTGTTCATCAAAATAGAGAAAA  1170
      |||| |||||  ||| |||||||
seq2  GCTG-TCATC--AATTGAGAAAA  1155


seq1: chr18_28414548_28415355
seq2: B6Ng01-253N02.g_65_880 (reverse)

seq1  AAGAT-CCAACAGCTATGTCTGAGTTCTCAGG-AAGCTAAGTGCTCTCTG  48
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGATCCCAACAGCTATGTCTGAGTTCTCAGGAAAGCTAAGTGCTCTCTG  50

seq1  CAGATCTCT-ACACAGTCTTCCTGGCAACACTTTG-ATTGT-AACCATT-  94
      ||||||||| ||||||||||||||||||||||||| ||||| ||||||| 
seq2  CAGATCTCTAACACAGTCTTCCTGGCAACACTTTGAATTGTAAACCATTC  100

seq1  CCCATGGGAGTTCAAGTGTCTTTGCTCATACACTTTTAGACTACCAATGC  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGAGTTCAAGTGTCTTTGCTCATACACTTTTAGACTACCAATGC  150

seq1  CCT-AAAACTGAACACAGATATCACAAAGTT-AATCATGAGACAATAATG  192
      ||| ||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTAAAAACTGAACACAGATATCACAAAGTTAAATCATGAGACAATAATG  200

seq1  TTGACTTCTCTAGAGGGAAGAACACACACAGACACACACAGACACACACA  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCTCTAGAGGGAAGAACACACACAGACACACACAGACACACACA  250

seq1  GACACACACAGACACACAGACACACAGACACACACACACACACACACACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACAGACACACAGACACACAGACACACACACACACACACACACA  300

seq1  CACACACAAAGGCTTCTCAAAGAGAGTGACTGCTTCATTGCTACTAATCT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACAAAGGCTTCTCAAAGAGAGTGACTGCTTCATTGCTACTAATCT  350

seq1  TAGGTAAGATTGTGGAGCAAAAATAGAGATTGCTCCTAAAATAATTTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGATTGTGGAGCAAAAATAGAGATTGCTCCTAAAATAATTTTCA  400

seq1  CCTCATTTAGTTTTTGGTAAGGGCTAGCTCTTGAAAAAGCACCCTAAAAA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTAGTTTTTGGTAAGGGCTAGCTCTTGAAAAAGCACCCTAAAAA  450

seq1  ATAAGCATCACAGACTAAGAGAATTAAAGGTAGTGATGATGGCAGCAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATCACAGACTAAGAGAATTAAAGGTAGTGATGATGGCAGCAAAC  500

seq1  CTAAGATGCAGGTGTAATTACCAAAGATGTGGACAACCTCTTAAGTAAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATGCAGGTGTAATTACCAAAGATGTGGACAACCTCTTAAGTAAGT  550

seq1  TCACAGTACAGAGGTGTGGTCTAGCTTGAGATTCAGAGACAGACTCATCT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGTACAGAGGTGTGGTCTAGCTTGAGATTCAGAGACAGACTCATCT  600

seq1  GCTCCTATTTTCCTATCCTTCCCAGTCATTTATTGTAATGACATTTTTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTATTTTCCTATCCTTCCCAGTCATTTATTGTAATGACATTTTTTT  650

seq1  TATTTCGTTATTTTAGATTGTGAATCACAGAAAGAGAAGGAATAGAAAAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCGTTATTTTAGATTGTGAATCACAGAAAGAGAAGGAATAGAAAAA  700

seq1  TGGAAAAAAACAATAATTATGAGAATTGAAAAAATGGGATGCATAAAGAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAACAATAATTATGAGAATTGAAAAAATGGGATGCATAAAGAG  750

seq1  AAAGAATGAAAAGCCATGCAAGATACCTGCTCTGTTTGTGATTAGGAATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGAAAAGCCATGCAAGATACCTGCTCTGTTTGTGATTAGGAATT  800

seq1  GGATTCTAATGAATTC  808
      ||||||||||||||||
seq2  GGATTCTAATGAATTC  816


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