BAC Information

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BAC

Clone NameB6Ng01-255F09
Chromosome18 (Build37)
Map Location 89,431,970 - 89,433,070
singlet/doubletsinglet
Overlap geneCd226
Upstream geneLOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6, Rttn
Downstream geneDok6, LOC383320, LOC620693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-255F09.bB6Ng01-255F09.g
ACCGA061566GA061567
length4181,110
definitionB6Ng01-255F09.b B6Ng01-255F09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tacaggaaaaccaaaagagttgactaacctggacctttggcgttctcaga
gtcagaaccaccagccaaagagcacacacaggctgggcctaggcctccct
gctcatatatatcagatgtgcaagcttgactttcatgtgggtcctaaata
agtggatcaggggttatctcagaagctgttgcctgtatgtgggttatgtt
ctatctgggctgccttgtctgacctcagtggtagaggaagcatctagcct
cacacagacttgaaatgcagtgggtgggggaggggatacccaggagttcc
tacctgcttacaggggaaggggagagggaatgggggaagaattgtgggac
agtgggaaagggtttccaccaccactattctctgaaacatctccctgatg
ctacttctctcctctcaa
gaattcctcacattttcttctttaaatgcaaccactgaaattcaataaac
attgagaaattccacctgtggagttgtcttaagtgctgttcctcaggaga
tgttcatcttgcttttggagattgggcctctccctggcttagggcttgcc
aattcagcccagggtcctgcttacttctgaagtggaatatagtgttatac
cacagtagactttttcatgtggatagaagtcaggtccttgtattggtatg
gcaggtgctattaacattattgtttttaaagatttatttgtattactttt
atctgtattgtgtatgtgggtgtgagtggaagtgcttttggaagcaatag
gtgtcaggttctcagcagttgcagttacagacaattttgagccagtgtat
agattatggggacctgtgtaagaagagtaaccactgaaccatcttttcag
ccccatattcttgttcttgatgctgaacccaaattaatcaaggaagcaat
aaaaatctttagtagtcataagaattaaggaggctttcaagaaaaacttt
ccccgctcaacccatctgttcttagattctttgagtttgattcctatcct
gccatgattaatggatcctttcttcatttctccttctttctttggtggga
atttattaaattcataattcatactacaacttttttcttctaggtggaac
caataaacattttatccttcccatcgttggagggttagtttcactgttac
ttgtcatcctaattatcatcattttcattttatataacaggtaagtaagg
caagttatgctgagtcttattaatcttgaatgattctgatatttaagatt
ttctataacaacccaacaacttatgaagcaacttgggattcatgtgtgag
tgtacagtaggtacataggtaattggctgcttttcaaaagggacaaaagg
ggggggggcaattggagtacttattatagaccaaagcctgggagtcactc
actttaagagttggtcatgcgcccttacattcatgcaaattcttctgttc
tacatcatacttaacttctgctttcctcacgggaaatagcctggtaagtt
taaagaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89431970_89433070
seq2: B6Ng01-255F09.g_66_1175

seq1  GAATTCCTCACATTTTCTTCTTTAAATGCAACCACTGAAATTCAATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCACATTTTCTTCTTTAAATGCAACCACTGAAATTCAATAAAC  50

seq1  ATTGAGAAATTCCACCTGTGGAGTTGTCTTAAGTGCTGTTCCTCAGGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGAAATTCCACCTGTGGAGTTGTCTTAAGTGCTGTTCCTCAGGAGA  100

seq1  TGTTCATCTTGCTTTTGGAGATTGGGCCTCTCCCTGGCTTAGGGCTTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATCTTGCTTTTGGAGATTGGGCCTCTCCCTGGCTTAGGGCTTGCC  150

seq1  AATTCAGCCCAGGGTCCTGCTTACTTCTGAAGTGGAATATAGTGTTATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGCCCAGGGTCCTGCTTACTTCTGAAGTGGAATATAGTGTTATAC  200

seq1  CACAGTAGACTTTTTCATGTGGATAGAAGTCAGGTCCTTGTATTGGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTAGACTTTTTCATGTGGATAGAAGTCAGGTCCTTGTATTGGTATG  250

seq1  GCAGGTGCTATTAACATTATTGTTTTTAAAGATTTATTTGTATTACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGCTATTAACATTATTGTTTTTAAAGATTTATTTGTATTACTTTT  300

seq1  ATCTGTATTGTGTATGTGGGTGTGAGTGGAAGTGCTTTTGGAAGCAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTATTGTGTATGTGGGTGTGAGTGGAAGTGCTTTTGGAAGCAATAG  350

seq1  GTGTCAGGTTCTCAGCAGTTGCAGTTACAGACAATTTTGAGCCAGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAGGTTCTCAGCAGTTGCAGTTACAGACAATTTTGAGCCAGTGTAT  400

seq1  AGATTATGGGGACCTGTGTAAGAAGAGTAACCACTGAACCATCTTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATGGGGACCTGTGTAAGAAGAGTAACCACTGAACCATCTTTTCAG  450

seq1  CCCCATATTCTTGTTCTTGATGCTGAACCCAAATTAATCAAGGAAGCAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATATTCTTGTTCTTGATGCTGAACCCAAATTAATCAAGGAAGCAAT  500

seq1  AAAAATCTTTAGTAGTCATAAGAATTAAGGAGGCTTTCAAGAAAAACTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTTTAGTAGTCATAAGAATTAAGGAGGCTTTCAAGAAAAACTTT  550

seq1  CCCCGCTCAACCCATCTGTTCTTAGATTCTTTGAGTTTGATTCCTATCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGCTCAACCCATCTGTTCTTAGATTCTTTGAGTTTGATTCCTATCCT  600

seq1  GCCATGATTAATGGATCCTTTCTTCATTTCTCCTTCTTTCTTTGGTGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGATTAATGGATCCTTTCTTCATTTCTCCTTCTTTCTTTGGTGGGA  650

seq1  ATTTATTAAATTCATAATTCATACTACAACTTTTTTCTTCTAGGTGGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAAATTCATAATTCATACTACAACTTTTTTCTTCTAGGTGGAAC  700

seq1  CAATAAACATTTTATCCTTCCCATCGTTGGAGGGTTAGTTTCACTGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACATTTTATCCTTCCCATCGTTGGAGGGTTAGTTTCACTGTTAC  750

seq1  TTGTCATCCTAATTATCATCATTTTCATTTTATATAACAGGTAAGTAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCCTAATTATCATCATTTTCATTTTATATAACAGGTAAGTAAGG  800

seq1  CAAGTTATGCTGAGTCTTATTAATCTTGAATGATTCTGATATTTAAGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTATGCTGAGTCTTATTAATCTTGAATGATTCTGATATTTAAGATT  850

seq1  TTCTATAACAACCCAACAACTTATGAAGCAACTTGGGATTCATGTGTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAACAACCCAACAACTTATGAAGCAACTTGGGATTCATGTGTGAG  900

seq1  TGTACAGTTAGGTACATAGGTAATT-GCTGCTTTTCAAAAAGGGACAAAA  949
      ||||||| ||||||||||||||||| |||||||||| |||||||||||||
seq2  TGTACAG-TAGGTACATAGGTAATTGGCTGCTTTTC-AAAAGGGACAAAA  948

seq1  -GGGGGGGGGCAATGGGAGTAC-TATTATAGACCAAAGC--TGGAGTCAC  995
       ||||||||||||| ||||||| ||||||||||||||||   ||||||||
seq2  GGGGGGGGGGCAATTGGAGTACTTATTATAGACCAAAGCCTGGGAGTCAC  998

seq1  TCAC-TTAAGAGTTGGCAGTGCGCCCTTACATTCATGCAAATTTCTCTGT  1044
      |||| |||||||||||   ||||||||||||||||||||||||  |||||
seq2  TCACTTTAAGAGTTGGTCATGCGCCCTTACATTCATGCAAATTCTTCTGT  1048

seq1  TCTACATCCATCTTCACTTCTGCCTCCTCCACGGG-AATAGC--TGTAAG  1091
      ||||||||   ||| |||||||| | |  |||||| ||||||   |||||
seq2  TCTACATCATACTTAACTTCTGCTTTCCTCACGGGAAATAGCCTGGTAAG  1098

seq1  TT--GAGAAGCT  1101
      ||   |||||||
seq2  TTTAAAGAAGCT  1110