BAC Information

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BAC

Clone NameB6Ng01-258G04
Chromosome18 (Build37)
Map Location 87,958,228 - 87,959,417
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-258G04.bB6Ng01-258G04.g
ACCGA063836GA063837
length1,1691,180
definitionB6Ng01-258G04.b B6Ng01-258G04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgtgtctagcttgttgtgctgtgggacagtcaccatttcttc
ttcttcttgtgatatcagctcctattatggtcatctccatatcaccatct
aaatgttctcacagtgtgcttagaatctcttctgctaccctttgttcctt
tgtgtgattttaccattacatgaaggttttgttgttgttgttttgtttct
tgcattacatttcgctctttgaaaacattcataggagctgaatatgttcc
ttgcaggtagagtgctaatctcatctgccagagacccagactccaatgtc
ttacaagactatcacaactaccaacaatagaaaagtgtagttgtagataa
gtatagtgtctctaggctgtaatcccaacaacttgtgagactaaggtagg
tttaccatgacttccatgctaaggtgagctacatagtgagttctgagata
gtctgcactacaaagtgatactgtctctcattggatcaaaagtaaagtga
ttgagagaaaatgaaatgaaaaggaacatagaaataatattctgaggtta
ctagactcctcagaatcttgaactctgactccagataaatatctgaacat
gacagatactcattatcacttcatctattctcctatctggctataagaat
gggatttcaggattaatttatatcttgatttttcactctaataacacatc
atccctacatttggatgcattcatctgtcttgttctttggatgtctgttc
attcactgcgttctattgctatattccagtgctttccaacttgtccacag
ttttaacattttctaccttaaaaaaaaaacttgtggatggccttttttat
tatcaccttgatatgtcataattacatatagatattcataatttacaatg
tagaaaaataacatttggatcagtattatgggcatctctttatgatcgct
cagtatgatatgcaatacatttttttaaattttcaaagctttgccatgtg
gctaaaattatactcagatagatatataaaatatatcatttatagatgta
ggacacaacgagttcagttcagaacaactggcaattaaatccgattgaat
tcagtgagttatgtttcagacaaatctaagtctgccagttgtcttactta
taatagattgcttataata

gaattcctgatatttccaagacttttatcatgaataggtgttgaatcttg
tcaaatgctttctcctcatctaacaagatggtcatgtggtttttgtcttt
gagtttgtttatataatggattacgttggtggatttccatatattaaacc
atccctgcatgcctggaataaaacctacttagtcagaatggatgattgct
ttaatgtgttcttggattcagttagtgagaattttattgagtatttttgc
attgatattcataagggaatttggtctgaagttctctatctttgttggat
atttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttt
ggtagagtaccttctacttctattttgtggaatagtttgtgcagaactgg
aattagatcttctttgatggtctgatagaactctgtaccaaacccatctg
gtcctgtgctgtttttggctggtagactattaatgactgcttctatttct
ttaggggatatgggactgattagatctttaacttgatcctgatttaactt
tgttacctggtatctgtctagaaatttgtccatttagtccagattttcca
gttttgttgaatatagccttttgtagaaggatctgatggtattttggatt
tcttcaggatctgttgttatgtctcccttttcatttcttattttgttaat
taggattttgtccctgtgccctcttgtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctagtttggttaattctttga
atagttcttcttgtttccacttggttgattttgcccctgagtttgattat
ttcctgccatctactcctcttgggtgaattttctcctttttttttatagc
atttagatgtgttgtcaagctgcttgtgtgtgctctctctctagtttctt
tttagaggcactcagagctatgagttccctctagaaatgctttcatgtgt
cccatagttggtatgttgtgcttcatttcataaacgcttaaaagtcttta
attcttttaatcttctggaccaagaaatcatggaagagtgtgtcagttct
aatggaatgtggcttcccaattaggtgttatgagtcaagcctaggtcaat
ggggtccgtaatgaagaaatgtgcacatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_87958228_87959417
seq2: B6Ng01-258G04.b_43_1211

seq1  GAATTCCATGTGTCTAGCTTGTTGTGCTGTGGGACAGTCACCATTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGTGTCTAGCTTGTTGTGCTGTGGGACAGTCACCATTTCTTC  50

seq1  TTCTTCTTGTGATATCAGCTCCTATTATGGTCATCTCCATATCACCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTGTGATATCAGCTCCTATTATGGTCATCTCCATATCACCATCT  100

seq1  AAATGTTCTCACAGTGTGCTTAGAATCTCTTCTGCTACCCTTTGTTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTCTCACAGTGTGCTTAGAATCTCTTCTGCTACCCTTTGTTCCTT  150

seq1  TGTGTGATTTTACCATTACATGAAGGTTTTGTTGTTGTTGTTTTGTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATTTTACCATTACATGAAGGTTTTGTTGTTGTTGTTTTGTTTCT  200

seq1  TGCATTACATTTCGCTCTTTGAAAACATTCATAGGAGCTGAATATGTTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTACATTTCGCTCTTTGAAAACATTCATAGGAGCTGAATATGTTCC  250

seq1  TTGCAGGTAGAGTGCTAATCTCATCTGCCAGAGACCCAGACTCCAATGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTAGAGTGCTAATCTCATCTGCCAGAGACCCAGACTCCAATGTC  300

seq1  TTACAAGACTATCACAACTACCAACAATAGAAAAGTGTAGTTGTAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGACTATCACAACTACCAACAATAGAAAAGTGTAGTTGTAGATAA  350

seq1  GTATAGTGTCTCTAGGCTGTAATCCCAACAACTTGTGAGACTAAGGTAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGTCTCTAGGCTGTAATCCCAACAACTTGTGAGACTAAGGTAGG  400

seq1  TTTACCATGACTTCCATGCTAAGGTGAGCTACATAGTGAGTTCTGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATGACTTCCATGCTAAGGTGAGCTACATAGTGAGTTCTGAGATA  450

seq1  GTCTGCACTACAAAGTGATACTGTCTCTCATTGGATCAAAAGTAAAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCACTACAAAGTGATACTGTCTCTCATTGGATCAAAAGTAAAGTGA  500

seq1  TTGAGAGAAAATGAAATGAAAAGGAACATAGAAATAATATTCTGAGGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGAAAATGAAATGAAAAGGAACATAGAAATAATATTCTGAGGTTA  550

seq1  CTAGACTCCTCAGAATCTTGAACTCTGACTCCAGATAAATATCTGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACTCCTCAGAATCTTGAACTCTGACTCCAGATAAATATCTGAACAT  600

seq1  GACAGATACTCATTATCACTTCATCTATTCTCCTATCTGGCTATAAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGATACTCATTATCACTTCATCTATTCTCCTATCTGGCTATAAGAAT  650

seq1  GGGATTTCAGGATTAATTTATATCTTGATTTTTCACTCTAATAACACATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTCAGGATTAATTTATATCTTGATTTTTCACTCTAATAACACATC  700

seq1  ATCCCTACATTTGGATGCATTCATCTGTCTTGTTCTTTGGATGTCTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTACATTTGGATGCATTCATCTGTCTTGTTCTTTGGATGTCTGTTC  750

seq1  ATTCACTGCGTTCTATTGCTATATTCCAGTGCTTTCCAACTTGTCCACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACTGCGTTCTATTGCTATATTCCAGTGCTTTCCAACTTGTCCACAG  800

seq1  TTTTAACATTTTCTACCTTAAAAAAAAAACTTGTGGATGGCCTTTTTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACATTTTCTACCTTAAAAAAAAAACTTGTGGATGGCCTTTTTTAT  850

seq1  TATCACCTTGATATGTCATAATTACATATAGATATTCATAATTTACAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACCTTGATATGTCATAATTACATATAGATATTCATAATTTACAATG  900

seq1  TAGAAAAATAACATTTGGATCAGTATTATGGGCATCTCTTTATGATCGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAATAACATTTGGATCAGTATTATGGGCATCTCTTTATGATCGCT  950

seq1  CAGTATGATATGCAATACATTTTTTTAAATTTTCAAAAGCTTTGCCATGT  1000
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGTATGATATGCAATACATTTTTTTAAATTTTC-AAAGCTTTGCCATGT  999

seq1  GGCTAAAAATTATACTCAGATAAGATATATAAAATATATCATTTATAGAT  1050
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGCT-AAAATTATACTCAGAT-AGATATATAAAATATATCATTTATAGAT  1047

seq1  GTAGAACACAAAACGAGTTTCAGTTTCAGAACAACT-GCATTTAAATCCC  1099
      |||| ||||  |||||| ||||| |||||||||||| ||| |||||||| 
seq2  GTAGGACAC--AACGAG-TTCAG-TTCAGAACAACTGGCAATTAAATCCG  1093

seq1  AATTTGAAATTCAGTGAGTAAATGTTTCCAGGACAAAAATCTAAACATTC  1149
      |  ||| ||||||||||||  |||||||    | | |||||||   | ||
seq2  A--TTG-AATTCAGTGAGT-TATGTTTC----AGACAAATCTA---AGTC  1132

seq1  TTGCCACAGTTGTCTTACTTATTAAATAGA-TGCTTATAATA  1190
       |||  ||||||||||||||||  |||||| |||||||||||
seq2  -TGC--CAGTTGTCTTACTTAT--AATAGATTGCTTATAATA  1169


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