BAC Information

Click to search

BAC

Clone NameB6Ng01-260L18
Chromosome18 (Build37)
Map Location 46,234,501 - 46,353,841
singlet/doubletdoublet
Overlap geneTrim36
Upstream geneLOC225457, LOC100042900, Kcnn2
Downstream geneLOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260L18.bB6Ng01-260L18.g
ACCGA065583GA065584
length1,1011,143
definitionB6Ng01-260L18.b B6Ng01-260L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,352,738 - 46,353,841)(46,234,501 - 46,235,666)
sequence
gaattcttttagagtcagtggtgaccacagcctcatgttaagcatggtct
ttatactaaggagcatatgtgtgtatgtgtgagtacccagaagttccagg
ctgcagagcttccactctgagctgtttgcactgggaagttttatctttaa
acctttcgtctactctacttggtttctcccactgataggacggggggggg
ggcactttttaatcttgtgaattttccctctattttttcagaaaagcatc
tctttctaagctgcatttaaagactatctttttctgtgcctgccttatgc
agtggagtccccttgtttagtatttatatccacgtatctactccatcaga
gtaaacagtagtactttcatgcattatgtatacatgtttttttttcccaa
ctcacacatgaataaaaatacatcttagagaggtggggggcttggaaggt
gagactgtttgaaatgtggcagtcatttccgaaggtctggtttgtgaatc
agtggtcacaaatgtcagggctgtcacaaatgtcagcagttttaaaggac
caggtgtcatcgtgttgcagatgtaataacacctttcgtttatgggcaga
catgataagacacacttgaaaaggaagccagaaaccctgtttgtagcact
gaatgtagaaggaatgtatttctaaaaattagtttttaaccattggtttt
actaaaggattagaccctaagctgtccagtgtagtatacactagttgtga
aagtgcttgaaataggacttttctgattaaatatagtattttctgctgta
tatataaaatgcttactagatttccaaagcttctgataacaaagacagat
ttaatgctttttatcttattacattctgagactgtatataatggatctag
tgggttaataatatcagaactaaacttatgtcttaactttttattgtgga
tattagagagattaaatgtacatgtgctgtggcctcatgtgtttcatggg
ataatattgctaataatatttatagaactttaacaaaatgcctttgagaa
gcataaggttctgtatattgtcattacctatccaggtgtgtgcaaacgaa
a
gaattctacagcgtagtagagtgactattcgcaatagcccaactattgaa
ttaacaaacctagaagcgaggaacgcatgagctctgtgatgtttaatcat
gcttgtcagcttcacacacctcacatgagggaagctcaattgaggaactg
cccgaatcagattgccctggggtcctgtttatgaggcattttcttgattg
tcagttgatgtgggaaacccagctcactgcgggcagtatcatccctaggc
aggtaagccttatgtgtataagaaaggtggctgattaaaccagggaaaag
cactccagtaagcagtattccaccatggtctctacttcagttcctgccct
aagtccttttcttggcttccttttgttgtaaactataagccaaacaaact
ctttctaccctgaagttgcctttggccagtattttatcacagcaacagaa
agcagactgagagagtttctaacataaagaaacagtaaggagaagaatat
aataaattcatttacctgagtattaaaatatcactctacctgggtatggt
ggtgcacacaattagtctcagcccttggatggcagaggtaagaatttaaa
gccagcctagtatacatacagagactgtttcaaataaataaataaaacaa
gtaaataaataagtaaaatgtcacactttaaaccaaaatgtgcatagtta
ctgtatattaattaaaaaacaaaaatttcaaactcaattataataattaa
ataagtataaaaatttgtccaaaaggtatagtggtttgtttctcaaatta
atgcattacactttatttagccttcttgtgatgatgtgagaagacaaagg
gaagttctttatttacagtttgcttctggtgtttctgaataatcactttc
actggacttgcatgtggaggtcaccattaagtcaaacagagattatttgg
gccataaacattaccacacatttatacttacatctatagacagcagatgg
ctcagagctatggagtggaggcaccatagcagcaccagattatcatccct
aagtcaaatttattttaaataaaactctgattttactatccgattctctc
ctgctgaatattgtgtttcacatgatctgtgtgccattcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_46352738_46353841
seq2: B6Ng01-260L18.b_45_1145 (reverse)

seq1  TTTCTGTTTG--CACACCTGGATGGGTAATTGACATATATACAGAAACTT  48
      |||| |||||  ||||||||||| ||||| ||||| |||||||| ||| |
seq2  TTTC-GTTTGCACACACCTGGATAGGTAA-TGACA-ATATACAG-AACCT  46

seq1  TATGC-TCTCAAAGCCTTTTGTTTAAAAGTCTATTAAATATATATAGCAA  97
      ||||| |||||||| | |||  |||||  |||| |||||||   ||||||
seq2  TATGCTTCTCAAAGGCATTTTGTTAAAGTTCTA-TAAATATTATTAGCAA  95

seq1  TATTATCCCAATGAAACACATGA-GCCACAGCACAATGTACATTTAATCT  146
      ||||||||| ||||||||||||| |||||||||| |||||||||||||||
seq2  TATTATCCC-ATGAAACACATGAGGCCACAGCAC-ATGTACATTTAATCT  143

seq1  CTCTAATATCCACAAT-AAAAGTTAAGACATAAGTTTAGTTCTGATATTA  195
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTAATATCCACAATAAAAAGTTAAGACATAAGTTTAGTTCTGATATTA  193

seq1  TTTAACCCACTAGATCCATTATATACAGTCTCAGAATGTAATAAGATAAA  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTAACCCACTAGATCCATTATATACAGTCTCAGAATGTAATAAGATAAA  242

seq1  AAGCATTAAATCTGTCTTTGTTATCAGAAGCTTTGGAAATCTAGTAAGCA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTAAATCTGTCTTTGTTATCAGAAGCTTTGGAAATCTAGTAAGCA  292

seq1  TTTTATATATACAGCAGAAAATACTATATTTAATCAGAAAAGTCCTATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATACAGCAGAAAATACTATATTTAATCAGAAAAGTCCTATTT  342

seq1  CAAGCACTTTCACAACTAGTGTATACTACACTGGACAGCTTAGGGTCTAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACTTTCACAACTAGTGTATACTACACTGGACAGCTTAGGGTCTAA  392

seq1  TCCTTTAGTAAAACCAATGGTTAAAAACTAATTTTTAGAAATACATTCCT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAGTAAAACCAATGGTTAAAAACTAATTTTTAGAAATACATTCCT  442

seq1  TCTACATTCAGTGCTACAAACAGGGTTTCTGGCTTCCTTTTCAAGTGTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATTCAGTGCTACAAACAGGGTTTCTGGCTTCCTTTTCAAGTGTGT  492

seq1  CTTATCATGTCTGCCCATAAACGAAAGGTGTTATTACATCTGCAACACGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCATGTCTGCCCATAAACGAAAGGTGTTATTACATCTGCAACACGA  542

seq1  TGACACCTGGTCCTTTAAAACTGCTGACATTTGTGACAGCCCTGACATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACCTGGTCCTTTAAAACTGCTGACATTTGTGACAGCCCTGACATTT  592

seq1  GTGACCACTGATTCACAAACCAGACCTTCGGAAATGACTGCCACATTTCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACTGATTCACAAACCAGACCTTCGGAAATGACTGCCACATTTCA  642

seq1  AACAGTCTCACCTTCCAAGCCCCCCACCTCTCTAAGATGTATTTTTATTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCTCACCTTCCAAGCCCCCCACCTCTCTAAGATGTATTTTTATTC  692

seq1  ATGTGTGAGTTGGGAAAAAAAAACATGTATACATAATGCATGAAAGTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGAGTTGGGAAAAAAAAACATGTATACATAATGCATGAAAGTACT  742

seq1  ACTGTTTACTCTGATGGAGTAGATACGTGGATATAAATACTAAACAAGGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTACTCTGATGGAGTAGATACGTGGATATAAATACTAAACAAGGG  792

seq1  GACTCCACTGCATAAGGCAGGCACAGAAAAAGATAGTCTTTAAATGCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCACTGCATAAGGCAGGCACAGAAAAAGATAGTCTTTAAATGCAGC  842

seq1  TTAGAAAGAGATGCTTTTCTGAAAAAATAGAGGGAAAATTCACAAGATTA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAGAGATGCTTTTCTGAAAAAATAGAGGGAAAATTCACAAGATTA  892

seq1  AAAAGTGCCCCCCCCCCCGTCCTATCAGTGGGAGAAACCAAGTAGAGTAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGCCCCCCCCCCCGTCCTATCAGTGGGAGAAACCAAGTAGAGTAG  942

seq1  ACGAAAGGTTTAAAGATAAAACTTCCCAGTGCAAACAGCTCAGAGTGGAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAAGGTTTAAAGATAAAACTTCCCAGTGCAAACAGCTCAGAGTGGAA  992

seq1  GCTCTGCAGCCTGGAACTTCTGGGTACTCACACATACACACATATGCTCC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCAGCCTGGAACTTCTGGGTACTCACACATACACACATATGCTCC  1042

seq1  TTAGTATAAAGACCATGCTTAACATGAGGCTGTGGTCACCACTGACTCTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATAAAGACCATGCTTAACATGAGGCTGTGGTCACCACTGACTCTA  1092

seq1  AAAGAATTC  1104
      |||||||||
seq2  AAAGAATTC  1101

seq1: chr18_46234501_46235666
seq2: B6Ng01-260L18.g_66_1208

seq1  GAATTCTACAGCGTAGTAGAGTGACTATTCGCAATAGCCCAACTATTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGCGTAGTAGAGTGACTATTCGCAATAGCCCAACTATTGAA  50

seq1  TTAACAAACCTAGAAGCGAGGAACGCATGAGCTCTGTGATGTTTAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAACCTAGAAGCGAGGAACGCATGAGCTCTGTGATGTTTAATCAT  100

seq1  GCTTGTCAGCTTCACACACCTCACATGAGGGAAGCTCAATTGAGGAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTCAGCTTCACACACCTCACATGAGGGAAGCTCAATTGAGGAACTG  150

seq1  CCCGAATCAGATTGCCCTGGGGTCCTGTTTATGAGGCATTTTCTTGATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAATCAGATTGCCCTGGGGTCCTGTTTATGAGGCATTTTCTTGATTG  200

seq1  TCAGTTGATGTGGGAAACCCAGCTCACTGCGGGCAGTATCATCCCTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGATGTGGGAAACCCAGCTCACTGCGGGCAGTATCATCCCTAGGC  250

seq1  AGGTAAGCCTTATGTGTATAAGAAAGGTGGCTGATTAAACCAGGGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGCCTTATGTGTATAAGAAAGGTGGCTGATTAAACCAGGGAAAAG  300

seq1  CACTCCAGTAAGCAGTATTCCACCATGGTCTCTACTTCAGTTCCTGCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCAGTAAGCAGTATTCCACCATGGTCTCTACTTCAGTTCCTGCCCT  350

seq1  AAGTCCTTTTCTTGGCTTCCTTTTGTTGTAAACTATAAGCCAAACAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTTTCTTGGCTTCCTTTTGTTGTAAACTATAAGCCAAACAAACT  400

seq1  CTTTCTACCCTGAAGTTGCCTTTGGCCAGTATTTTATCACAGCAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACCCTGAAGTTGCCTTTGGCCAGTATTTTATCACAGCAACAGAA  450

seq1  AGCAGACTGAGAGAGTTTCTAACATAAAGAAACAGTAAGGAGAAGAATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGAGAGAGTTTCTAACATAAAGAAACAGTAAGGAGAAGAATAT  500

seq1  AATAAATTCATTTACCTGAGTATTAAAATATCACTCTACCTGGGTATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATTCATTTACCTGAGTATTAAAATATCACTCTACCTGGGTATGGT  550

seq1  GGTGCACACAATTAGTCTCAGCCCTTGGATGGCAGAGGTAAGAATTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACACAATTAGTCTCAGCCCTTGGATGGCAGAGGTAAGAATTTAAA  600

seq1  GCCAGCCTAGTATACATACAGAGACTGTTTCAAATAAATAAATAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTAGTATACATACAGAGACTGTTTCAAATAAATAAATAAAACAA  650

seq1  GTAAATAAATAAGTAAAATGTCACACTTTAAACCAAAATGTGCATAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATAAGTAAAATGTCACACTTTAAACCAAAATGTGCATAGTTA  700

seq1  CTGTATATTAATTAAAAAACAAAAATTTCAAACTCAATTATAATAATTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTAATTAAAAAACAAAAATTTCAAACTCAATTATAATAATTAA  750

seq1  ATAAGTATAAAAATTTGTCCAAAAGGTATAGTGGTTTGTTTCTCAAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATAAAAATTTGTCCAAAAGGTATAGTGGTTTGTTTCTCAAATTA  800

seq1  ATGCATTACACTTTATTTAGCCTTCTTGTGATGATGTGAGAAGACAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTACACTTTATTTAGCCTTCTTGTGATGATGTGAGAAGACAAAGG  850

seq1  GAAGTTCTTTATTTACAGTTTGCTTCTGGTGTTTCTGAATAATCACTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTTTATTTACAGTTTGCTTCTGGTGTTTCTGAATAATCACTTTC  900

seq1  ACTGGACTTGCATGTGGAGGTCACCATTAAGTCAAACAGAGATTATTT-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACTGGACTTGCATGTGGAGGTCACCATTAAGTCAAACAGAGATTATTTGG  950

seq1  GCCATAAACATTACCACACATTTATACTTACAATCTATAGACAAGCAAGA  999
      ||||||||||||||||||||||||||||||| |||||||||| ||| |||
seq2  GCCATAAACATTACCACACATTTATACTTAC-ATCTATAGAC-AGC-AGA  997

seq1  TGGCTCCAGAGCTAT-GAGTGGGAAGGCACCATAGCCAGCACCCAAGATT  1048
      ||||| ||||||||| ||||||  ||||||||||| |||||||  |||||
seq2  TGGCT-CAGAGCTATGGAGTGG--AGGCACCATAG-CAGCACC--AGATT  1041

seq1  ATCCATCCCTAAAGTCAAATTTATTTTAAATTAAAAAACTCTGATTTTTA  1098
      || ||||||| ||||||||||||||||||||   |||||||||| |||||
seq2  AT-CATCCCT-AAGTCAAATTTATTTTAAAT---AAAACTCTGA-TTTTA  1085

seq1  CTTATTCAGATTTCTCCTTCTTGCTGAATATATGTGTTTTCACACATGAT  1148
      ||   || || |||||  || |||||||||| |||||||   ||||||||
seq2  CT--ATCCGA-TTCTC--TCCTGCTGAATAT-TGTGTTT---CACATGAT  1126

seq1  CTGTGTGCACATTCATGT  1166
      |||||||| |||||||||
seq2  CTGTGTGC-CATTCATGT  1143