BAC Information

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BAC

Clone NameB6Ng01-263B12
Chromosome18 (Build37)
Map Location 31,423,395 - 31,580,652
singlet/doubletdoublet
Overlap geneRit2, EG666130
Upstream genePik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneSyt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263B12.bB6Ng01-263B12.g
ACCGA067348GA067349
length9451,114
definitionB6Ng01-263B12.b B6Ng01-263B12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,579,693 - 31,580,652)(31,423,395 - 31,424,513)
sequence
gaattccttgagctaaattccttccattctcccctgtctctcattgctgg
agtcagagttctccaaactctaaaagagtctcattttattcataatctta
acccagtttctctttgctttttgccacagggctttttggaagacagggag
gagcattgtctttacataggcatagccttgaagggtgtgaaaaacagtct
atatggtggcagaaaatgttctgaattggttcaggaatggattaaaatgc
aggaatggattaaaatgcccacagcaaaagccatccctacaatgctttgt
tagtaacttcttcctttggtctcaaactgtatttccagttatcttcaaga
taaactaattgcagaggggaaactgggaaaggggataacatttgaaatgt
aaataagtaaaatatccaataaaaaagataaactaaatgcttgagagtga
cctaaacaaaaacatgcagaaatgcaacaaaacaatgtagcaaaatagat
ctcatttttatattggtcataactttatttattttggtaaatatatttat
atgtttgaaaaattattttctaatgtttcataattgtttcagatagaacc
aaaatataaaattttagagatattcttttagatattacaaatatttatga
tcagatttatcagtccatatactgatgaattgaattagtctataactaat
gaattgaatttcagtgttgttaaaacatacttgaaatacctgtaatactg
taaattattctttttcattatgtttttttcatatactacaatgtatttat
ttataaacaggcacaaaagaacaaatcctaatttttcttttgtaaattct
atattcttagttaaccacaatgattccaaaagaagaatactttctaattg
ctaatatagactgggaatttaagttgaggcacaattctcttattc
gaattctgaaatcttccgactgggaacaaaaggcaaacccaacaaagact
tggagggtagatttgaggcattggacacgtctgaatagcccccagtatca
gagaggatcttgtggtgatgagtcccttgggttttgccataggggatgac
catggacatagcttttcaatagatatgattgttacaacccttgaatcgcc
atcttcaaacagagaaagaaagccatgtctcattactgctctaatcagta
gtacttaaaatgtccaaaaactattttatctttacttatgaagttttctt
tttcatggtctgaattcggaaaaactggtactttactctagcttctatga
tggaggttacacaggcaaacccaccctttcaaggggttatataaattcag
tgccagcagagacgttttgtggataaactgcatgagccagttatttatta
aagaaggaaaatagctaataaaaagatttatttgtatttattataggtac
tctctaacatgccttctattgttctctaatatattataatcagcagacca
atttggggccctctttgatattacaatctcctttattgttagagttaaat
cacaaaggcctctcgcccttgactttcctaatgtggagcactatgtataa
aatgagttactgcaaataagacaagggctgttgccataaacctgtcaact
tcatctctgggattttctttccaaatagcacgacacacttctaacaatta
ctttgcattgaaaagaggcaagcctctattaaacttaggcatttatggat
ctcgtgtttcaacacattcccagcaatacaaaggcattgggaatattaag
catggagctttttgaactgtttggggggtgaaaagctgctgcgcgtgctt
gcattaagctgggactctgtttagttagcacaagagatgctcacttactg
ttggataacatttcggttgtactgccatgcagcttccttcactctgctaa
ggcacatcagacggtcaggggagcagagctggcttcttctagtaatgtgt
caaacagaaacaatccttcatcgcttatattcattaaagcagcagcagaa
tataagcaatgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_31579693_31580652
seq2: B6Ng01-263B12.b_49_993 (reverse)

seq1  GAATAAGAGAAATTGGTGCTTCAACTTAAATATCCCAGTTCTATATTAGC  50
      |||||||||||  | |||| ||||||||||| |||||| |||||||||||
seq2  GAATAAGAGAA--TTGTGCCTCAACTTAAAT-TCCCAG-TCTATATTAGC  46

seq1  AAATTAAGATATGTTATCTTCTTTTTGAGAATCAATTGTGGTATAACTAA  100
      ||  | ||| | ||  |||||||||   ||||| |||||||| ||||| |
seq2  AA--TTAGA-AAGTATTCTTCTTTT--GGAATC-ATTGTGGT-TAACT-A  88

seq1  AGAATATAGACATTTAACAAAAGAAAAATAAGGATTTGTTCTTTTGTG-C  149
      |||||||||| |||| ||||||||||||| |||||||||||||||||| |
seq2  AGAATATAGA-ATTT-ACAAAAGAAAAATTAGGATTTGTTCTTTTGTGCC  136

seq1  TG-TTATAAATAAAATACA-TGTAGGTATATGAAAAAAACATAATGAAAA  197
      || |||||||| ||||||| |||| |||||||||||||||||||||||||
seq2  TGTTTATAAAT-AAATACATTGTA-GTATATGAAAAAAACATAATGAAAA  184

seq1  AGAATAATTTACAAGTATTACAGGTATTTCAAGTATGTTATAAACAACAC  247
      |||||||||||| |||||||||||||||||||||||||| | ||||||||
seq2  AGAATAATTTAC-AGTATTACAGGTATTTCAAGTATGTT-TTAACAACAC  232

seq1  TGAAATTCAATTCATTAGTTATAGACTAATTCAATTCATCAGTATATGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCAATTCATTAGTTATAGACTAATTCAATTCATCAGTATATGGA  282

seq1  CTGATAAATCTGATCATAAATATTTGTAATATCTAAAAGAATATCTCTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATAAATCTGATCATAAATATTTGTAATATCTAAAAGAATATCTCTAA  332

seq1  AATTTTATATTTTGGTTCTATCTGAAACAATTATGAAACATTAGAAAATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTATATTTTGGTTCTATCTGAAACAATTATGAAACATTAGAAAATA  382

seq1  ATTTTTCAAACATATAAATATATTTACCAAAATAAATAAAGTTATGACCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCAAACATATAAATATATTTACCAAAATAAATAAAGTTATGACCA  432

seq1  ATATAAAAATGAGATCTATTTTGCTACATTGTTTTGTTGCATTTCTGCAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAATGAGATCTATTTTGCTACATTGTTTTGTTGCATTTCTGCAT  482

seq1  GTTTTTGTTTAGGTCACTCTCAAGCATTTAGTTTATCTTTTTTATTGGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTAGGTCACTCTCAAGCATTTAGTTTATCTTTTTTATTGGAT  532

seq1  ATTTTACTTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTCCCCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTACTTATTTACATTTCAAATGTTATCCCCTTTCCCAGTTTCCCCTC  582

seq1  TGCAATTAGTTTATCTTGAAGATAACTGGAAATACAGTTTGAGACCAAAG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAGTTTATCTTGAAGATAACTGGAAATACAGTTTGAGACCAAAG  632

seq1  GAAGAAGTTACTAACAAAGCATTGTAGGGATGGCTTTTGCTGTGGGCATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGTTACTAACAAAGCATTGTAGGGATGGCTTTTGCTGTGGGCATT  682

seq1  TTAATCCATTCCTGCATTTTAATCCATTCCTGAACCAATTCAGAACATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCCATTCCTGCATTTTAATCCATTCCTGAACCAATTCAGAACATTT  732

seq1  TCTGCCACCATATAGACTGTTTTTCACACCCTTCAAGGCTATGCCTATGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCACCATATAGACTGTTTTTCACACCCTTCAAGGCTATGCCTATGT  782

seq1  AAAGACAATGCTCCTCCCTGTCTTCCAAAAAGCCCTGTGGCAAAAAGCAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAATGCTCCTCCCTGTCTTCCAAAAAGCCCTGTGGCAAAAAGCAA  832

seq1  AGAGAAACTGGGTTAAGATTATGAATAAAATGAGACTCTTTTAGAGTTTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTGGGTTAAGATTATGAATAAAATGAGACTCTTTTAGAGTTTG  882

seq1  GAGAACTCTGACTCCAGCAATGAGAGACAGGGGAGAATGGAAGGAATTTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCTGACTCCAGCAATGAGAGACAGGGGAGAATGGAAGGAATTTA  932

seq1  GCTCAAGGAATTC  960
      |||||||||||||
seq2  GCTCAAGGAATTC  945

seq1: chr18_31423395_31424513
seq2: B6Ng01-263B12.g_68_1181

seq1  GAATTCTGAAATCTTCCGACTGGGAACAAAAGGCAAACCCAACAAAGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAAATCTTCCGACTGGGAACAAAAGGCAAACCCAACAAAGACT  50

seq1  TGGAGGGTAGATTTGAGGCATTGGACACGTCTGAATAGCCCCCAGTATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGTAGATTTGAGGCATTGGACACGTCTGAATAGCCCCCAGTATCA  100

seq1  GAGAGGATCTTGTGGTGATGAGTCCCTTGGGTTTTGCCATAGGGGATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGATCTTGTGGTGATGAGTCCCTTGGGTTTTGCCATAGGGGATGAC  150

seq1  CATGGACATAGCTTTTCAATAGATATGATTGTTACAACCCTTGAATCGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACATAGCTTTTCAATAGATATGATTGTTACAACCCTTGAATCGCC  200

seq1  ATCTTCAAACAGAGAAAGAAAGCCATGTCTCATTACTGCTCTAATCAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCAAACAGAGAAAGAAAGCCATGTCTCATTACTGCTCTAATCAGTA  250

seq1  GTACTTAAAATGTCCAAAAACTATTTTATCTTTACTTATGAAGTTTTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTAAAATGTCCAAAAACTATTTTATCTTTACTTATGAAGTTTTCTT  300

seq1  TTTCATGGTCTGAATTCGGAAAAACTGGTACTTTACTCTAGCTTCTATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGTCTGAATTCGGAAAAACTGGTACTTTACTCTAGCTTCTATGA  350

seq1  TGGAGGTTACACAGGCAAACCCACCCTTTCAAGGGGTTATATAAATTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTACACAGGCAAACCCACCCTTTCAAGGGGTTATATAAATTCAG  400

seq1  TGCCAGCAGAGACGTTTTGTGGATAAACTGCATGAGCCAGTTATTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGAGACGTTTTGTGGATAAACTGCATGAGCCAGTTATTTATTA  450

seq1  AAGAAGGAAAATAGCTAATAAAAAGATTTATTTGTATTTATTATAGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGAAAATAGCTAATAAAAAGATTTATTTGTATTTATTATAGGTAC  500

seq1  TCTCTAACATGCCTTCTATTGTTCTCTAATATATTATAATCAGCAGACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAACATGCCTTCTATTGTTCTCTAATATATTATAATCAGCAGACCA  550

seq1  ATTTGGGGCCCTCTTTGATATTACAATCTCCTTTATTGTTAGAGTTAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGCCCTCTTTGATATTACAATCTCCTTTATTGTTAGAGTTAAAT  600

seq1  CACAAAGGCCTCTCGCCCTTGACTTTCCTAATGTGGAGCACTATGTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGGCCTCTCGCCCTTGACTTTCCTAATGTGGAGCACTATGTATAA  650

seq1  AATGAGTTACTGCAAATAAGACAAGGGCTGTTGCCATAAACCTGTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTTACTGCAAATAAGACAAGGGCTGTTGCCATAAACCTGTCAACT  700

seq1  TCATCTCTGGGATTTTCTTTCCAAATAGCACGACACACTTCTAACAATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGGGATTTTCTTTCCAAATAGCACGACACACTTCTAACAATTA  750

seq1  CTTTGCATTGAAAAGAGGCAAGCCTCTATTAAACTTAGGCATTTATGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCATTGAAAAGAGGCAAGCCTCTATTAAACTTAGGCATTTATGGAT  800

seq1  CTCGTGTTTCAACACATTCCCAGCAATACAAAGGCATTGGGAATATTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTGTTTCAACACATTCCCAGCAATACAAAGGCATTGGGAATATTAAG  850

seq1  CATGGAGCTTTTTGAACTGTTTGGGGGGTGAAAAGCTGCTGCGCGTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCTTTTTGAACTGTTTGGGGGGTGAAAAGCTGCTGCGCGTGCTT  900

seq1  GCATTAAGCTGGGACTCTGTTTAGTTAGCACAAGAGATGCTCACTTACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGCTGGGACTCTGTTTAGTTAGCACAAGAGATGCTCACTTACTG  950

seq1  TTGGATAACATTTCGGTTGTACTGCCATGCAGCTTCCTTCACTCTGCTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAACATTTCGGTTGTACTGCCATGCAGCTTCCTTCACTCTGCTAA  1000

seq1  GGCACATCAGACGGTCAGGGGGAAGCAGGAGCTGGCTTCTTCTAGTAATG  1050
      |||||||||||||||||||||  |||| ||||||||||||||||||||| 
seq2  GGCACATCAGACGGTCAGGGG--AGCA-GAGCTGGCTTCTTCTAGTAAT-  1046

seq1  GTGTCAAACAGAAAACCACCCTTCATCGCTTATATTCATTTAAAGCAGCA  1100
      ||||||||||| |||| | ||||||||||||||||||| |||||||||||
seq2  GTGTCAAACAG-AAACAATCCTTCATCGCTTATATTCA-TTAAAGCAGCA  1094

seq1  GCAG-ATATAGCAAATGTCT  1119
      |||| |||||   |||||||
seq2  GCAGAATATAAGCAATGTCT  1114