BAC Information

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BAC

Clone NameB6Ng01-263I19
Chromosome18 (Build37)
Map Location 61,613,769 - 61,768,374
singlet/doubletdoublet
Overlap gene4933429F08Rik, Csnk1a1
Upstream gene2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1, LOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675
Downstream geneIl17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263I19.bB6Ng01-263I19.g
ACCGA067690GA067691
length844951
definitionB6Ng01-263I19.b B6Ng01-263I19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,613,769 - 61,614,609)(61,767,401 - 61,768,374)
sequence
gaattccacggaaggtaacaggacaagcaaggcccagtgaccctagagcc
aaacagctttgggtgtgctgagcccccggcctgagagccaggatagagat
gaattgcctttgaacctgtacaaacctttgagaggcattgagcttcctgc
tgaggggtggagccaatatttttgttgtttggttgttttttttttttttt
tttttttggcttttgtttgtttgttttcgggacagggtttctctgcatag
ccctggctgtcctggaactccctctgtagacaaggctggcctcgaactca
gaaatccgcctgtcttggcctcccaagtgctgggattaaaggcgtgcgtc
aaggacacagggcatcagctcaagtcacaggagcctgcgctgtgtcccta
tcttcttggtttattgactctgtccctggctacactgtaggtactccgag
gcaggggactgcgtcttgttttttcttagttatcaatgacagtgggctcg
ttactgaattactttttaaaaaagatttatcatctgtttacttgcttaca
atatgtgtgtgtgtgtgtgcacgcgcatctgtgtcacagcacacacgtga
ggtcagaagacaactttggggaagtcagttctccctttcgcttcatttca
aaatcaagcctgtcttcttttctgccactgtcctgtatggtcaagctttc
accagttctcctgtctctgcctcctatctctccacaggagtgctaggatt
acagacatccgacactacactgactttcttacttgggtttcccggggtgg
actcaagtttgtcgggctagcatggcaagtgctttttttgtact
gaattctaatccttagcatccatacaagtcagggggtgtgcacatgtaag
cccatacctggggttagaaaaaggtggctacccagagcacactgattggg
ctagctcaggttgactgagctaaatctataaataggttgactatttattg
atgggctggcaagctccagcacagtaggtaaaggtgcttgctgccaagcc
tgagcctgaacacatatagcagaaggagagaaccagttcacacagatgta
tgcataagttgtccccataaatgtatatgtatgtatgaaatgatagctac
gatgaccacagtggattttattaacatttgagcagcaagtccttaacctg
acttcattccattcacgaccagcaaaatgcagaacatgtatatatatata
tatatatatatatatatatatatatatatatataaccaaggtcttgtcat
ctcagacatactaggccatgcatcaggtcctaatttatcctgtctttcct
gtctttgtctgtgtgtttgtttttgagacagggtgtagccctggctgtcc
tggagtttgctctgtagaccaggctggccttgaacccagagatcgacctg
cctctgcctctccagtgctgggattaaaggcgtgcaccactacacttggc
ttactctgctttctacttggcatctctttttgccaggattgtcaaacttg
actgtgcatgtcctgtgtgaaactgctagacccttcccattctatgggtc
taggtcaagaatgtgactctctgcagccaaatagagttcaacccctagcc
tggggataaaaactgagacactgtagaagagaagaagaagaagatgagaa
gaggatgacgatgaagaagagaagagagaagagagagaagagaaagaggg
ggaagggagagaagagagaagataagagagaagaggaggaggaggaggag
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_61613769_61614609
seq2: B6Ng01-263I19.b_48_891

seq1  GAATTCCACGGAAGGTAACAGGACAAGCAAGGCCCAGTGACCCTAGAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGAAGGTAACAGGACAAGCAAGGCCCAGTGACCCTAGAGCC  50

seq1  AAACAGCTTTGGGTGTGCTGAGCCCCCGGCCTGAGAGCCAGGATAGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCTTTGGGTGTGCTGAGCCCCCGGCCTGAGAGCCAGGATAGAGAT  100

seq1  GAATTGCCTTTGAACCTGTACAAACCTTTGAGAGGCATTGAGCTTCCTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCCTTTGAACCTGTACAAACCTTTGAGAGGCATTGAGCTTCCTGC  150

seq1  TGAGGGGTGGAGCCAATATTTTTGTTGTTTGGTTGTTTTTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTGGAGCCAATATTTTTGTTGTTTGGTTGTTTTTTTTTTTTTTT  200

seq1  TTTTTTTGGCTTTTGTTTGTTTGTTTTCGGGACAGGGTTTCTCTGCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGGCTTTTGTTTGTTTGTTTTCGGGACAGGGTTTCTCTGCATAG  250

seq1  CCCTGGCTGTCCTGGAACTCCCTCTGTAGACAAGGCTGGCCTCGAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTCCTGGAACTCCCTCTGTAGACAAGGCTGGCCTCGAACTCA  300

seq1  GAAATCCGCCTGTCTTGGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCGCCTGTCTTGGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGTC  350

seq1  AAGGACACAGGGCATCAGCTCAAGTCACAGGAGCCTGCGCTGTGTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACACAGGGCATCAGCTCAAGTCACAGGAGCCTGCGCTGTGTCCCTA  400

seq1  TCTTCTTGGTTTATTGACTCTGTCCCTGGCTACACTGTAGGTACTCCGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGGTTTATTGACTCTGTCCCTGGCTACACTGTAGGTACTCCGAG  450

seq1  GCAGGGGACTGCGTCTTGTTTTTTCTTAGTTATCAATGACAGTGGGCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGACTGCGTCTTGTTTTTTCTTAGTTATCAATGACAGTGGGCTCG  500

seq1  TTACTGAATTACTTTTTAAAAAAGATTTATCATCTGTTTACTTGCTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAATTACTTTTTAAAAAAGATTTATCATCTGTTTACTTGCTTACA  550

seq1  ATATGTGTGTGTGTGTGTGCACGCGCATCTGTGTCACAGCACACACGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTGTGTGTGTGTGCACGCGCATCTGTGTCACAGCACACACGTGA  600

seq1  GGTCAGAAGACAACTTTGGGGAAGTCAGTTCTCCCTTTCGCTTCATTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAAGACAACTTTGGGGAAGTCAGTTCTCCCTTTCGCTTCATTTCA  650

seq1  GAGTCAAGCCTGTC-TCCTTTCTGCCACTGTCCTGTATGGTCAAGCTTCA  699
       | ||||||||||| || ||||||||||||||||||||||||||||||  
seq2  AAATCAAGCCTGTCTTCTTTTCTGCCACTGTCCTGTATGGTCAAGCTTTC  700

seq1  GCCAGTTCTCCTGTCTCTGCCTCCTATCTCTCCACAGGAGTGCTAGGATT  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCTCCTGTCTCTGCCTCCTATCTCTCCACAGGAGTGCTAGGATT  750

seq1  ACAGACATCAGACACTACACTGACTTTCTTACTTGGGTTCCCCGGGGTGG  799
      ||||||||| ||||||||||||||||||||||||||||| ||||||||||
seq2  ACAGACATCCGACACTACACTGACTTTCTTACTTGGGTTTCCCGGGGTGG  800

seq1  ACTC-AGGTTGTCGGGCTAGCATGGCAAGTGC-TTTTGTGTACT  841
      |||| || |||||||||||||||||||||||| |||| ||||||
seq2  ACTCAAGTTTGTCGGGCTAGCATGGCAAGTGCTTTTTTTGTACT  844

seq1: chr18_61767401_61768374
seq2: B6Ng01-263I19.g_68_1018 (reverse)

seq1  TCTCCTCCTCCTCCTCCTCTTCTTCTCTT-TCTTCTTCCTCTTCTTCCTC  49
      |||||||||||||||||||||| |||||| ||||||  |||||    |||
seq2  TCTCCTCCTCCTCCTCCTCTTC-TCTCTTATCTTCT--CTCTT----CTC  43

seq1  TTCCCCTTCCCCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  99
      |  ||||||||||          ||||  ||||||   ||||||   |||
seq2  T--CCCTTCCCCC----------TCTTTCTCTTCTCTCTCTTCT--CTCT  79

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  149
      || |||||||| || || || ||||| || |||||||||||||| |||||
seq2  TC-TCTTCTTCATCGTCATCCTCTTC-TCATCTTCTTCTTCTTC-TCTTC  126

seq1  TACAGTGTCTCAGTTTTTATCCCCAGGCTAGGGGTTGAACTCTATTTGGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGTCTCAGTTTTTATCCCCAGGCTAGGGGTTGAACTCTATTTGGC  176

seq1  TGCAGAGAGTCACATTCTTGACCTAGACCCATAGAATGGGAAGGGTCTAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGAGTCACATTCTTGACCTAGACCCATAGAATGGGAAGGGTCTAG  226

seq1  CAGTTTCACACAGGACATGCACAGTCAAGTTTGACAATCCTGGCAAAAAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTCACACAGGACATGCACAGTCAAGTTTGACAATCCTGGCAAAAAG  276

seq1  AGATGCCAAGTAGAAAGCAGAGTAAGCCAAGTGTAGTGGTGCACGCCTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCAAGTAGAAAGCAGAGTAAGCCAAGTGTAGTGGTGCACGCCTTT  326

seq1  AATCCCAGCACTGGAGAGGCAGAGGCAGGTCGATCTCTGGGTTCAAGGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTGGAGAGGCAGAGGCAGGTCGATCTCTGGGTTCAAGGCC  376

seq1  AGCCTGGTCTACAGAGCAAACTCCAGGACAGCCAGGGCTACACCCTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTCTACAGAGCAAACTCCAGGACAGCCAGGGCTACACCCTGTCT  426

seq1  CAAAAACAAACACACAGACAAAGACAGGAAAGACAGGATAAATTAGGACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACACACAGACAAAGACAGGAAAGACAGGATAAATTAGGACC  476

seq1  TGATGCATGGCCTAGTATGTCTGAGATGACAAGACCTTGGTTATATATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCATGGCCTAGTATGTCTGAGATGACAAGACCTTGGTTATATATAT  526

seq1  ATATATATATATATATATATATATATATATATATATACATGTTCTGCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATACATGTTCTGCATT  576

seq1  TTGCTGGTCGTGAATGGAATGAAGTCAGGTTAAGGACTTGCTGCTCAAAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTCGTGAATGGAATGAAGTCAGGTTAAGGACTTGCTGCTCAAAT  626

seq1  GTTAATAAAATCCACTGTGGTCATCGTAGCTATCATTTCATACATACATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAAAATCCACTGTGGTCATCGTAGCTATCATTTCATACATACATA  676

seq1  TACATTTATGGGGACAACTTATGCATACATCTGTGTGAACTGGTTCTCTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTATGGGGACAACTTATGCATACATCTGTGTGAACTGGTTCTCTC  726

seq1  CTTCTGCTATATGTGTTCAGGCTCAGGCTTGGCAGCAAGCACCTTTACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTATATGTGTTCAGGCTCAGGCTTGGCAGCAAGCACCTTTACCT  776

seq1  ACTGTGCTGGAGCTTGCCAGCCCATCAATAAATAGTCAACCTATTTATAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTGGAGCTTGCCAGCCCATCAATAAATAGTCAACCTATTTATAG  826

seq1  ATTTAGCTCAGTCAACCTGAGCTAGCCCAATCAGTGTGCTCTGGGTAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCTCAGTCAACCTGAGCTAGCCCAATCAGTGTGCTCTGGGTAGCC  876

seq1  ACCTTTTTCTAACCCCAGGTATGGGCTTACATGTGCACACCCCCTGACTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTTCTAACCCCAGGTATGGGCTTACATGTGCACACCCCCTGACTT  926

seq1  GTATGGATGCTAAGGATTAGAATTC  974
      |||||||||||||||||||||||||
seq2  GTATGGATGCTAAGGATTAGAATTC  951