BAC Information

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BAC

Clone NameB6Ng01-265O21
Chromosome18 (Build37)7 (Build37)
Map Location 54,138,912 - 54,139,242116,731,039 - 116,731,702
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042430, Snx2, Gm1859, Snx24, Ppic, Prdm6, Ccdc100, Csnk1g3
Downstream geneEG433184, LOC667360, EG545257, LOC100042489, Zfp608
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O21.bB6Ng01-265O21.g
ACCGA069451GA069452
length783664
definitionB6Ng01-265O21.b B6Ng01-265O21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,138,912 - 54,139,242)(116,731,039 - 116,731,702)
sequence
gaattcactaagtagagcaggctgacctcaaattcatggaaatccacctg
cctctgctgagtactgggattaagggtgtgtaccaccatgcccagcccaa
cagaacatttgaaaacatttgatattgccgttaactcatgttctgcaatt
gaaaggtaatgtcatatttagttctctgcatattccacgagttgtgctga
cattctgagtcttgggctggggatgtggctcagttagttagtagagcact
tgcctagcatgcaagaagccctgggtttgatcctcagcgcctcacagaac
tgggaatgacaacacactcctggaaccctaacactcgggaagcattggca
agaggatcagaagttttgagttatcctcagctgtttattgagtgtgaggg
cagtctgggctacatgagagcttatgatgagacttccagctttgcacata
gatttggaaccaaatttagactctatcctcctctagattaaaaatttgag
ctaagtcttcttttacatcaatcatatatagagacagagacacacacaca
cacacacacacacacacacacacacacacacacacacacacacatatata
tatatatatatatatatatatatatatatatatatatatatatatatata
tatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagacagagagag
agagagagaaaatatatatagatatagagagag

gaattctctgtcaggaatcaggaagaaaaccaattctaagttttccctgt
taggatgaatgggtttgctttgatagggcatgttaattagggcagtcaaa
agaggggctttgattcctggacttcaatactttgatagctagaccttggt
agtcagcatcaggagaaggaagtgaataagggaatagtctttggtggcta
gctgtaggggtgtaatcatcagttaagcaagaaggaggggataggagaga
gtaagacttgccagagtcatgtttgtcatgctctggtctaccagagccct
tcactttttctaaattctgcctgtgagccattccagcaaattatcaaacc
cgtgggagaggggtgtgagaggaagccctcaaaatgtccagaaatatggg
tgactgagactagtgagttgaggcagtcataagagactaagcccttaaac
tgtatgtagggtttatactaactccaagcagtcagtgtcaaaatgaaact
ggattacagacttctaagttggagtccagagctacagacctggctgctgt
gggttgggtgctgtgggatgagggagcacggtatgtctggtgccacaagg
gtgtgagcagaaacagaccatagtggtaggaaacagagaaagtgggggtt
gggagggcagaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_54138912_54139242
seq2: B6Ng01-265O21.b_625_828 (reverse)

seq1  CTCTCTC---------------TCTCTCTCTCTCTCTCTCTCTCTCTCTC  35
      |||||||               | ||||||||||||||||| ||||||||
seq2  CTCTCTCTATATCTATATATATTTTCTCTCTCTCTCTCTCTGTCTCTCTC  50

seq1  TCTCTTTCACACACACACACACACACACACACACACACACACACACACAC  85
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCACACACACACACACACACACACACACACACACACACACACAC  100

seq1  ACACACACACACATATATATGAGACTTACCACACAAATTATAACCAGTCT  135
      ||||||||||||||||||||               |  ||||        
seq2  ACACACACACACATATATAT---------------ATATATA--------  127

seq1  TGGTGCAAGTTATA-AAATATTTGATTGGTCCAGGAATGTTAGCCTGACC  184
                |||| | |||| |                           
seq2  ----------TATATATATATAT---------------------------  140

seq1  ATTCCAGGACTCAGGTGACATAATGAGGCAGATCTCTGAGTTTGAGGACA  234
                       | |||                            
seq2  -----------------ATATA----------------------------  145

seq1  GCCTGATCTACATCATGAGTTCCAGGTGAACAGAGCTACATGGTTAAGAC  284
           || || ||                | | |  || ||         
seq2  ----TATATATAT----------------ATATATATATAT---------  166

seq1  TCTGTCTCAATATATATATATCTGGGTCTATATGTGTGTGTGTGTGT  331
               |||||||||||| |   | |||||||||||||||||||
seq2  ---------ATATATATATATATATATATATATGTGTGTGTGTGTGT  204


seq1: chr7_116731039_116731702
seq2: B6Ng01-265O21.g_67_730

seq1  GAATTCTCTGTCAGGAATCAGGAAGAAAACCAATTCTAAGTTTTCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTCAGGAATCAGGAAGAAAACCAATTCTAAGTTTTCCCTGT  50

seq1  TAGGATGAATGGGTTTGCTTTGATAGGGCATGTTAATTAGGGCAGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATGAATGGGTTTGCTTTGATAGGGCATGTTAATTAGGGCAGTCAAA  100

seq1  AGAGGGGCTTTGATTCCTGGACTTCAATACTTTGATAGCTAGACCTTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCTTTGATTCCTGGACTTCAATACTTTGATAGCTAGACCTTGGT  150

seq1  AGTCAGCATCAGGAGAAGGAAGTGAATAAGGGAATAGTCTTTGGTGGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCATCAGGAGAAGGAAGTGAATAAGGGAATAGTCTTTGGTGGCTA  200

seq1  GCTGTAGGGGTGTAATCATCAGTTAAGCAAGAAGGAGGGGATAGGAGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGGGGTGTAATCATCAGTTAAGCAAGAAGGAGGGGATAGGAGAGA  250

seq1  GTAAGACTTGCCAGAGTCATGTTTGTCATGCTCTGGTCTACCAGAGCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGACTTGCCAGAGTCATGTTTGTCATGCTCTGGTCTACCAGAGCCCT  300

seq1  TCACTTTTTCTAAATTCTGCCTGTGAGCCATTCCAGCAAATTATCAAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTTCTAAATTCTGCCTGTGAGCCATTCCAGCAAATTATCAAACC  350

seq1  CGTGGGAGAGGGGTGTGAGAGGAAGCCCTCAAAATGTCCAGAAATATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGAGAGGGGTGTGAGAGGAAGCCCTCAAAATGTCCAGAAATATGGG  400

seq1  TGACTGAGACTAGTGAGTTGAGGCAGTCATAAGAGACTAAGCCCTTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGACTAGTGAGTTGAGGCAGTCATAAGAGACTAAGCCCTTAAAC  450

seq1  TGTATGTAGGGTTTATACTAACTCCAAGCAGTCAGTGTCAAAATGAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTAGGGTTTATACTAACTCCAAGCAGTCAGTGTCAAAATGAAACT  500

seq1  GGATTACAGACTTCTAAGTTGGAGTCCAGAGCTACAGACCTGGCTGCTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTACAGACTTCTAAGTTGGAGTCCAGAGCTACAGACCTGGCTGCTGT  550

seq1  GGGTTGGGTGCTGTGGGATGAGGGAGCACGGTATGTCTGGTGCCACAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGGGTGCTGTGGGATGAGGGAGCACGGTATGTCTGGTGCCACAAGG  600

seq1  GTGTGAGCAGAAACAGACCATAGTGGTAGGAAACAGAGAAAGTGGGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAGCAGAAACAGACCATAGTGGTAGGAAACAGAGAAAGTGGGGGTT  650

seq1  GGGAGGGCAGAGGT  664
      ||||||||||||||
seq2  GGGAGGGCAGAGGT  664


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