BAC Information

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BAC

Clone NameB6Ng01-266L23
Chromosome18 (Build37)
Map Location 27,441,196 - 27,550,736
singlet/doubletdoublet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646, EG271505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266L23.bB6Ng01-266L23.g
ACCGA070063GA070064
length1,1381,116
definitionB6Ng01-266L23.b B6Ng01-266L23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,549,591 - 27,550,736)(27,441,196 - 27,442,139)
sequence
gaattcacctgagtctgtcacagcttctctcattaggtccattgttcgga
aggatgttgaatccatttagctccaatgtaaataaatatacttccaaaaa
tactagcatgcagattaaaatcatattagtaatgaaattaaagtaaaagt
tatcatgtatcctaagcattttctatgaaaaagcattacttcccaagatc
atgctttccagctctcggcaacaactaacacctcaagttctgtttaatcc
ttctttattgcatggtaaagtcacatatttccttaaaatactttatttgt
atgtttaattatgtatatgtgtgcaatgaaggggtgtgcttgtgagtgga
gctcttactaaggttagaaaagtgtgtcaaaccccttcagctggggttat
aaggatttggtagctacctgaaatggatactggtaagtgatcttggattc
tttaaaggattcttaataaaaatgcatgttattaaccatatctctacagc
catgctaaaattacttctattcaatcttcctggatgctgagtgcatcaat
aactatggagaaattacagttgagatctgacacagaacaaggctctagat
accttaatacctgaaatatacagaaaatatagagacaaatctgatggcac
acattttagaatggaaatatgaaaggcaatttgattcttttgaaaggtgg
ttcctatgtcctagttacagcagcatcaatctgatggcctagacataacg
tgatgagattgtaatgggctgatcacaagagagccttggtgcccattaga
agggttgatttttagatttctgtagccttgtaaaaactgacatggtatga
gcgccagtaacagaaccctgagggacaaagactagaggattgttatgtct
tgattgctaaatgaaatgtagtgaggtctaagctatgtgaaataactttt
ctcaaaggtttaagacaggagcatagaacagtataagaggtgttcatgga
gatttctgtgttgtgtatttggagatcagtccactgtggtagcacatcct
tacttaggccagttgtcatcagctgcctttagagaggctagttgtaacat
ggaagccctgaaagaaatgctgaaaatatcggattctc

gaattcagagatctgcctgcctctgttaagcacagaggctaaactagctg
ggtggggcccaatctgaaatgaccatttttaccacacctggacctaacct
tgctctgttccaggctaattctaaactcaggaatttgtctgcatttgtaa
gcatagagggaaaacaaaaacaaaaacacaaaaccttaactgggtgggat
ctcctgctatcaccacgacataaatcttggtatctccttgcctattatct
ttctgacaggttggctcatattgtagttgcttttgttcctttaaattcat
gaagcccctcatatagttcatactgcatctttttttttttttggcatagt
tgagaaattacatgttttcaaacacatgtttttagagttactttccacag
tcttaagggatgtcctgaagatcccagcatttaccattttcctaagatac
tagccataccttaacttcctggactcagactgctgtttgattttaaagga
gtcatttcctttaacagggaggaatattcttggaggaacatgaaaatatg
tacattattatacacacaagctttatgcccacagcagctagtgacactta
tggagacccacgtctgccctccctagaggcaggaactgtgtcattctgtc
cccactaaggacattctatacccgggcacactcggcctgaaagagcctgc
tactggtggtgcttgattcaagattgtctattcataaaaactctggcaca
tttactaattatagagttttacatttatgttacacaattcccaagtgcct
ggtacaaaagcaatactggccatgcctttccggaagtatttgatttttgt
tttttgtttttaggatttttttcgagacagggcttctctgtgtagtcctg
gctctcctggaactcactctgtagaccaggctgggcctggaactcagaaa
tctgcctgcctctgcctcccaatgctgggataaagcatgagccaccactg
cccagctgtatttgaaacagctttgaagaacttctatatccagcacttta
ctctaataaagacagaaacaactcgagcctatccactctattttatacat
aggcctggataaatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_27549591_27550736
seq2: B6Ng01-266L23.b_43_1180 (reverse)

seq1  GAGAAT-CGATATTTTTCAGCA-TTCTCTCA-GGCT--CATGTT-CACCT  44
      |||||| ||||| ||||||||| |||| ||| ||||  |||||| || ||
seq2  GAGAATCCGATA-TTTTCAGCATTTCTTTCAGGGCTTCCATGTTACAACT  49

seq1  AG-CTCTCTTAAAGCAGCTGATGGCCACTGGCCTAAGTAAGGATGGTGCT  93
      || |||||| || |||||||||| | |||||||||||||||||| |||||
seq2  AGCCTCTCTAAAGGCAGCTGATGACAACTGGCCTAAGTAAGGAT-GTGCT  98

seq1  ACCCACAGTGGACTGGATCCTCCCAAATTAACCACAACCACCAAGAAAAT  143
      | |||||||||||| ||||   ||||||    ||||| |||  || ||||
seq2  A-CCACAGTGGACT-GATC--TCCAAAT---ACACAA-CAC--AG-AAAT  137

seq1  CTCCATGAACACCTCTTATACTGTTCTATTGCTCCCTGTCTTAAACCTTT  193
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CTCCATGAACACCTCTTATACTGTTCTA-TGCT-CCTGTCTTAAACCTTT  185

seq1  GAGAAAAGTTATTTCACATAGCTTAGACCTCACTACATTTCATTTAGCAA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTTATTTCACATAGCTTAGACCTCACTACATTTCATTTAGCAA  235

seq1  TCAAGACATAACAATCCTCTAGTCTTTGTCCCTCAGGGTTCTGTTACTGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGACATAACAATCCTCTAGTCTTTGTCCCTCAGGGTTCTGTTACTGG  285

seq1  CGCTCATACCATGTCAGTTTTTACAAGGCTACAGAAATCTAAAAATCAAC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCATACCATGTCAGTTTTTACAAGGCTACAGAAATCTAAAAATCAAC  335

seq1  CCTTCTAATGGGCACCAAGGCTCTCTTGTGATCAGCCCATTACAATCTCA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTAATGGGCACCAAGGCTCTCTTGTGATCAGCCCATTACAATCTCA  385

seq1  TCACGTTATGTCTAGGCCATCAGATTGATGCTGCTGTAACTAGGACATAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTTATGTCTAGGCCATCAGATTGATGCTGCTGTAACTAGGACATAG  435

seq1  GAACCACCTTTCAAAAGAATCAAATTGCCTTTCATATTTCCATTCTAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACCTTTCAAAAGAATCAAATTGCCTTTCATATTTCCATTCTAAAA  485

seq1  TGTGTGCCATCAGATTTGTCTCTATATTTTCTGTATATTTCAGGTATTAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCATCAGATTTGTCTCTATATTTTCTGTATATTTCAGGTATTAA  535

seq1  GGTATCTAGAGCCTTGTTCTGTGTCAGATCTCAACTGTAATTTCTCCATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCTAGAGCCTTGTTCTGTGTCAGATCTCAACTGTAATTTCTCCATA  585

seq1  GTTATTGATGCACTCAGCATCCAGGAAGATTGAATAGAAGTAATTTTAGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGATGCACTCAGCATCCAGGAAGATTGAATAGAAGTAATTTTAGC  635

seq1  ATGGCTGTAGAGATATGGTTAATAACATGCATTTTTATTAAGAATCCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTAGAGATATGGTTAATAACATGCATTTTTATTAAGAATCCTTT  685

seq1  AAAGAATCCAAGATCACTTACCAGTATCCATTTCAGGTAGCTACCAAATC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCAAGATCACTTACCAGTATCCATTTCAGGTAGCTACCAAATC  735

seq1  CTTATAACCCCAGCTGAAGGGGTTTGACACACTTTTCTAACCTTAGTAAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCCCAGCTGAAGGGGTTTGACACACTTTTCTAACCTTAGTAAG  785

seq1  AGCTCCACTCACAAGCACACCCCTTCATTGCACACATATACATAATTAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACTCACAAGCACACCCCTTCATTGCACACATATACATAATTAAA  835

seq1  CATACAAATAAAGTATTTTAAGGAAATATGTGACTTTACCATGCAATAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATAAAGTATTTTAAGGAAATATGTGACTTTACCATGCAATAAA  885

seq1  GAAGGATTAAACAGAACTTGAGGTGTTAGTTGTTGCCGAGAGCTGGAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTAAACAGAACTTGAGGTGTTAGTTGTTGCCGAGAGCTGGAAAG  935

seq1  CATGATCTTGGGAAGTAATGCTTTTTCATAGAAAATGCTTAGGATACATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCTTGGGAAGTAATGCTTTTTCATAGAAAATGCTTAGGATACATG  985

seq1  ATAACTTTTACTTTAATTTCATTACTAATATGATTTTAATCTGCATGCTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTACTTTAATTTCATTACTAATATGATTTTAATCTGCATGCTA  1035

seq1  GTATTTTTGGAAGTATATTTATTTACATTGGAGCTAAATGGATTCAACAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTTGGAAGTATATTTATTTACATTGGAGCTAAATGGATTCAACAT  1085

seq1  CCTTCCGAACAATGGACCTAATGAGAGAAGCTGTGACAGACTCAGGTGAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGAACAATGGACCTAATGAGAGAAGCTGTGACAGACTCAGGTGAA  1135

seq1  TTC  1146
      |||
seq2  TTC  1138


seq1: chr18_27441196_27442139
seq2: B6Ng01-266L23.g_246_1182

seq1  AAAACCTTAACTGGGTGGGATCTCCTGCTATCACCACGACATAAATCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTAACTGGGTGGGATCTCCTGCTATCACCACGACATAAATCTTG  50

seq1  GTATCTCCTTGCCTATTATCTTTCTGACAGGTTGGCTCATATTGTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCTCCTTGCCTATTATCTTTCTGACAGGTTGGCTCATATTGTAGTTG  100

seq1  CTTTTGTTCCTTTAAATTCATGAAGCCCCTCATATAGTTCATACTGCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTCCTTTAAATTCATGAAGCCCCTCATATAGTTCATACTGCATC  150

seq1  TTTTTTTTTTTTTGGCATAGTTGAGAAATTACATGTTTTCAAACACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTGGCATAGTTGAGAAATTACATGTTTTCAAACACATGT  200

seq1  TTTTAGAGTTACTTTCCACAGTCTTAAGGGATGTCCTGAAGATCCCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGTTACTTTCCACAGTCTTAAGGGATGTCCTGAAGATCCCAGCA  250

seq1  TTTACCATTTTCCTAAGATACTAGCCATACCTTAACTTCCTGGACTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCATTTTCCTAAGATACTAGCCATACCTTAACTTCCTGGACTCAGA  300

seq1  CTGCTGTTTGATTTTAAAGGAGTCATTTCCTTTAACAGGGAGGAATATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTTTGATTTTAAAGGAGTCATTTCCTTTAACAGGGAGGAATATTC  350

seq1  TTGGAGGAACATGAAAATATGTACATTATTATACACACAAGCTTTATGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGAACATGAAAATATGTACATTATTATACACACAAGCTTTATGCC  400

seq1  CACAGCAGCTAGTGACACTTATGGAGACCCACGTCTGCCCTCCCTAGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGCTAGTGACACTTATGGAGACCCACGTCTGCCCTCCCTAGAGG  450

seq1  CAGGAACTGTGTCATTCTGTCCCCACTAAGGACATTCTATACCCGGGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGTGTCATTCTGTCCCCACTAAGGACATTCTATACCCGGGCAC  500

seq1  ACTCGGCCTGAAAGAGCCTGCTACTGGTGGTGCTTGATTCAAGATTGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGCCTGAAAGAGCCTGCTACTGGTGGTGCTTGATTCAAGATTGTCT  550

seq1  ATTCATAAAAACTCTGGCACATTTACTAATTATAGAGTTTTACATTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAAAAACTCTGGCACATTTACTAATTATAGAGTTTTACATTTATG  600

seq1  TTACACAATTCCCAAGTGCCTGGTACAAAAGCAATACTGGCCATGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAATTCCCAAGTGCCTGGTACAAAAGCAATACTGGCCATGCCTTT  650

seq1  CCGGAAGTATTTGATTTTTGTTTTTTGTTTTTAGGATTTTTTTCGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGTATTTGATTTTTGTTTTTTGTTTTTAGGATTTTTTTCGAGACA  700

seq1  GGGCTTCTCTGTGTAGTCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCTCTGTGTAGTCCTGGCTCTCCTGGAACTCACTCTGTAGACCAG  750

seq1  GCT-GGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAATGCTGG  799
      ||| ||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GCTGGGCCTGGAACTCAGAAATCTGCCTGCCTCTGCCTCCC-AATGCTGG  799

seq1  GATTAAAGGCATGAGCCACCACTGCCCAGCTGTATTTGAAACCAGCTTTG  849
      |||  || ||||||||||||||||||||||||||||||||| ||||||||
seq2  GAT--AAAGCATGAGCCACCACTGCCCAGCTGTATTTGAAA-CAGCTTTG  846

seq1  AAG-ACTTCTATATTCAAGCACCTTTACTCT-ATAAAGACCAGAAACAAA  897
      ||| ||||||||| || |||| ||||||||| ||||||| ||||||||| 
seq2  AAGAACTTCTATA-TCCAGCA-CTTTACTCTAATAAAGA-CAGAAACAAC  893

seq1  TTCAGAGCTATTCAACTCTATTTTATTACATAGGCTTGGATAAATAC  944
      |   ||||   || ||||||||||| ||||||||| |||||||||||
seq2  T--CGAGCCTATCCACTCTATTTTA-TACATAGGCCTGGATAAATAC  937


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