BAC Information

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BAC

Clone NameB6Ng01-270P07
Chromosome18 (Build37)
Map Location 57,098,991 - 57,222,342
singlet/doubletdoublet
Overlap geneC330018D20Rik
Upstream geneLOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3
Downstream geneMegf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-270P07.bB6Ng01-270P07.g
ACCGA073163GA073164
length9171,165
definitionB6Ng01-270P07.b B6Ng01-270P07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,098,991 - 57,099,890)(57,221,196 - 57,222,342)
sequence
gaattcactttattttaaaacagtggctgcagataattccctttaccaac
aaggctcactgctccagggctctgtttccatggaatttctgaaaactgac
cagggtctaaaagctgtacatttcatcttgcttgttgtcaaaggttagtc
tacgagtctccataaaactggcacaccagccaaccaaatcctggggtggg
ggtgggggtctctgtaggaagctggtattcttataagtgaattgctgaat
tacagaaacttcaggtaacctccacagcaaagattggtggtgttgcctac
agatattaggatcttttacaaatcttcaaattaggcaaataaatgcccct
cagaaatccaacctaaattcccaaggaggtatgagtgggatcaagatcaa
gtggcccagaaagggctttctccctaaggttcagggctgacattagctag
agtggacagtcacaggaatcatgcaattgtggactaaatagttgtaaagt
ggacctgaccctttaaactttgaccttttcaaagcaaaatgtagaaatat
tttaaaatccaggcttgttttcttcttgtttttccaagaagctgaacaca
cacacaaatgagctgtgagtttgtgggccaacatatttataaaacctacc
cagattcccaaggtatggagtcctgccctcctcattcttgccctagtctc
atttgtgaaatacaaagtgaaaggtatcttttgaccacataattctttgt
gtcacatggaagagatgagcaaacagattacaggggcttcctttctgcaa
cttttttttactgcactgtcttccctgtgaccatagttttgtgtttcttt
gttttggtaccgaaaaaggaatacgtttgatgttggggaaaggagctttc
aaaggatgatcaaggtt
gaattctctgtcacagagtgtgtatgccccagtgtattcctctaatttca
cattttcataagtcatcgtccacttggaccaggacacatatgagtgacag
atcaaactgctctgccgccaaacagaacggctgagctgctgtatcctagc
tggaaagccctccctactttaacggtttttaaaacacttgctttcaggaa
acccatcttggaattacaaagttctaaaacttctctctcatgtaggttat
ttgataattgataattacatttattaaattttaattcttggtgatggaga
gatagattgcttagttgggaagaacactgccttgctcttccagaagaccc
aagttcgattcccaacacacatatggcagctcacaactgtctgtaactcc
aggtccagggaatttaatatcttctgccctctgccctgtgcattaggcat
gcatgtggtgcacagacgtgcatgcagtcaaaacactcacacatttaaaa
aaaacagttataattcttttacatttaaaaatacaatcaaaacaaaagat
tgcactgtgaattataagccctcttcccagtgtaccttccctccaattaa
cactcatactacattgcatgctatgccaataacatttatcccccttcctt
tatgcaactgtttagaacagcatccacgttgcatctggcttctttcactt
ggagaatacttcccatcaatacataccgagttactttattttcttccaca
accccatggctccatttctattgtctgctgtttaacttactttcaatgct
cttctcctgtaatcaatattacaaagtgtatctttgccccccaccttttt
tttaaatttgtaagaaccaatttaacgagctccttgctttccatagtaat
ccctgctagctttcctaatcttccaccttcctggaaagtttatctattca
ataagatgggccttgttgagccatcaacaaaagtcttcagaaaaagagca
gcatttcttcagcagtagaaattcttccccactggggttttcatcattct
ttccccatcactcttccaccacctctcgaccttactgccccatgctgaat
acaaaacaatcctggagctgttgtacttcacacttctgaacctaacatct
cttgcctttaattcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_57098991_57099890
seq2: B6Ng01-270P07.b_44_960

seq1  GAATTCACTTTATTTTAAAACAGTGGCTGCAGATAATTCCCTTTACCAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATTTTAAAACAGTGGCTGCAGATAATTCCCTTTACCAAC  50

seq1  AAGGCTCACTGCTCCAGGGCTCTGTTTCCATGGAATTTCTGAAAACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACTGCTCCAGGGCTCTGTTTCCATGGAATTTCTGAAAACTGAC  100

seq1  CAGGGTCTAAAAGCTGTACATTTCATCTTGCTTGTTGTCAAAGGTTAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCTAAAAGCTGTACATTTCATCTTGCTTGTTGTCAAAGGTTAGTC  150

seq1  TACGAGTCTCCATAAAACTGGCACACCAGCCAACCAAATCCTGGGGTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGAGTCTCCATAAAACTGGCACACCAGCCAACCAAATCCTGGGGTGGG  200

seq1  GGTGGGGGTCTCTGTAGGAAGCTGGTATTCTTATAAGTGAATTGCTGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTCTCTGTAGGAAGCTGGTATTCTTATAAGTGAATTGCTGAAT  250

seq1  TACAGAAACTTCAGGTAACCTCCACAGCAAAGATTGGTGGTGTTGCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAACTTCAGGTAACCTCCACAGCAAAGATTGGTGGTGTTGCCTAC  300

seq1  AGATATTAGGATCTTTTACAAATCTTCAAATTAGGCAAATAAATGCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAGGATCTTTTACAAATCTTCAAATTAGGCAAATAAATGCCCCT  350

seq1  CAGAAATCCAACCTAAATTCCCAAGGAGGTATGAGTGGGATCAAGATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATCCAACCTAAATTCCCAAGGAGGTATGAGTGGGATCAAGATCAA  400

seq1  GTGGCCCAGAAAGGGCTTTCTCCCTAAGGTTCAGGGCTGACATTAGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCCAGAAAGGGCTTTCTCCCTAAGGTTCAGGGCTGACATTAGCTAG  450

seq1  AGTGGACAGTCACAGGAATCATGCAATTGTGGACTAAATAGTTGTAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACAGTCACAGGAATCATGCAATTGTGGACTAAATAGTTGTAAAGT  500

seq1  GGACCTGACCCTTTAAACTTTGACCTTTTCAAAGCAAAATGTAGAAATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTGACCCTTTAAACTTTGACCTTTTCAAAGCAAAATGTAGAAATAT  550

seq1  TTTAAAATCCAGGCTTGTTTTCTTCTTGTTTTTCCAAGAAGCTGAACACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCCAGGCTTGTTTTCTTCTTGTTTTTCCAAGAAGCTGAACACA  600

seq1  CACACAAATGAGCTGTGAG-TTGTGGGCCAACATATTTATAAAACCTACC  649
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CACACAAATGAGCTGTGAGTTTGTGGGCCAACATATTTATAAAACCTACC  650

seq1  CAGATTCCCAAGGTATGGAGTCCTG-CCTCCTCATTCTTG-CCTAGTCTC  697
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  CAGATTCCCAAGGTATGGAGTCCTGCCCTCCTCATTCTTGCCCTAGTCTC  700

seq1  A-TTGTGAAATAC-AAGTG-AAGGTATC-TTTGACCACAT-ATTCTTTGT  742
      | ||||||||||| ||||| |||||||| ||||||||||| |||||||||
seq2  ATTTGTGAAATACAAAGTGAAAGGTATCTTTTGACCACATAATTCTTTGT  750

seq1  GTCACATGGAAGAGATGAGCAAACAGATTACAGGG--CTCCTTTCTGCA-  789
      |||||||||||||||||||||||||||||||||||   ||||||||||| 
seq2  GTCACATGGAAGAGATGAGCAAACAGATTACAGGGGCTTCCTTTCTGCAA  800

seq1  -CTTTTTTTACTGCACTGTCTT-CCTGTGACCATAG-TTTGTGTTTCTTT  836
        |||||||||||||||||||| ||||||||||||| |||||||||||||
seq2  CTTTTTTTTACTGCACTGTCTTCCCTGTGACCATAGTTTTGTGTTTCTTT  850

seq1  GTTTTGGTACCG-AGAAGGAATA-GGTTGATGTT-GGGAAAGGAGCTTTC  883
      |||||||||||| | |||||||| | |||||||| |||||||||||||||
seq2  GTTTTGGTACCGAAAAAGGAATACGTTTGATGTTGGGGAAAGGAGCTTTC  900

seq1  AAATGATGATAAAGGTT  900
      ||| |||||| ||||||
seq2  AAAGGATGATCAAGGTT  917

seq1: chr18_57221196_57222342
seq2: B6Ng01-270P07.g_68_1232 (reverse)

seq1  CGAA-TAAAGGCAGAGGATG-TAGGTGTCAG-AGTGTG-AGTAACCAACA  46
      |||| ||||||||   |||| ||||| |||| |||||| ||||  |||||
seq2  CGAATTAAAGGCAAGAGATGTTAGGT-TCAGAAGTGTGAAGTA--CAACA  47

seq1  GCTCCAAGAT--GTTTGTA-TCAGCAT-GGGCAGTAAGTCGGAGAGGTGG  92
      |||||| |||   |||||| ||||||| ||||||||||   |||||||||
seq2  GCTCCAGGATTGTTTTGTATTCAGCATGGGGCAGTAAGGTCGAGAGGTGG  97

seq1  TGG-AGAGTGATGGGGAAAGATGGATGAAA--CCCAGTGGG--AG-ATTT  136
      ||| |||||||||||||||||  |||||||  |||||||||  || ||||
seq2  TGGAAGAGTGATGGGGAAAGAATGATGAAAACCCCAGTGGGGAAGAATTT  147

seq1  CTACCTGCTG-AGGAATGCTGCTC-TTTTCTG-AGACTTTTGTTGATGGC  183
      ||| |||||| || |||||||||| ||||||| |||||||||||||||||
seq2  CTA-CTGCTGAAGAAATGCTGCTCTTTTTCTGAAGACTTTTGTTGATGGC  196

seq1  TCAACAAGGCCCATCTTATTGAATAGATAAAC-TTCCAGGAAGGTGGAAG  232
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAACAAGGCCCATCTTATTGAATAGATAAACTTTCCAGGAAGGTGGAAG  246

seq1  ATTAGG-AAGCTAGCAGGGATTACTATGGAAAGCAAGGAGCTCGTT-AAT  280
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTAGGAAAGCTAGCAGGGATTACTATGGAAAGCAAGGAGCTCGTTAAAT  296

seq1  TGGTTCTTACAA--TTTAAAAAAAGGTGGGGGGCAAAGATACACTTTGTA  328
      ||||||||||||  || |||||||||||||||||||||||||||||||||
seq2  TGGTTCTTACAAATTTAAAAAAAAGGTGGGGGGCAAAGATACACTTTGTA  346

seq1  ATATTGATTACAGGAGAAGAGCATTGAAAGTAAGTTAAACAGCAGACAAT  378
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGATTACAGGAGAAGAGCATTGAAAGTAAGTTAAACAGCAGACAAT  396

seq1  AGAAATGGAGCCATGGGGTTGTGGAAGAAAATAAAGTAACTCGGTATGTA  428
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGAGCCATGGGGTTGTGGAAGAAAATAAAGTAACTCGGTATGTA  446

seq1  TTGATGGGAAGTATTCTCCAAGTGAAAGAAGCCAGATGCAACGTGGATGC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGGAAGTATTCTCCAAGTGAAAGAAGCCAGATGCAACGTGGATGC  496

seq1  TGTTCTAAACAGTTGCATAAAGGAAGGGGGATAAATGTTATTGGCATAGC  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTAAACAGTTGCATAAAGGAAGGGGGATAAATGTTATTGGCATAGC  546

seq1  ATGCAATGTAGTATGAGTGTTAATTGGAGGGAAGGTACACTGGGAAGAGG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAATGTAGTATGAGTGTTAATTGGAGGGAAGGTACACTGGGAAGAGG  596

seq1  GCTTATAATTCACAGTGCAATCTTTTGTTTTGATTGTATTTTTAAATGTA  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATAATTCACAGTGCAATCTTTTGTTTTGATTGTATTTTTAAATGTA  646

seq1  AAAGAATTATAACTGTTTTTTTTAAATGTGTGAGTGTTTTGACTGCATGC  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATTATAACTGTTTTTTTTAAATGTGTGAGTGTTTTGACTGCATGC  696

seq1  ACGTCTGTGCACCACATGCATGCCTAATGCACAGGGCAGAGGGCAGAAGA  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGTGCACCACATGCATGCCTAATGCACAGGGCAGAGGGCAGAAGA  746

seq1  TATTAAATTCCCTGGACCTGGAGTTACAGACAGTTGTGAGCTGCCATATG  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTCCCTGGACCTGGAGTTACAGACAGTTGTGAGCTGCCATATG  796

seq1  TGTGTTGGGAATCGAACTTGGGTCTTCTGGAAGAGCAAGGCAGTGTTCTT  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGGAATCGAACTTGGGTCTTCTGGAAGAGCAAGGCAGTGTTCTT  846

seq1  CCCAACTAAGCAATCTATCTCTCCATCACCAAGAATTAAAATTTAATAAA  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTAAGCAATCTATCTCTCCATCACCAAGAATTAAAATTTAATAAA  896

seq1  TGTAATTATCAATTATCAAATAACCTACATGAGAGAGAAGTTTTAGAACT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTATCAATTATCAAATAACCTACATGAGAGAGAAGTTTTAGAACT  946

seq1  TTGTAATTCCAAGATGGGTTTCCTGAAAGCAAGTGTTTTAAAAACCGTTA  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATTCCAAGATGGGTTTCCTGAAAGCAAGTGTTTTAAAAACCGTTA  996

seq1  AAGTAGGGAGGGCTTTCCAGCTAGGATACAGCAGCTCAGCCGTTCTGTTT  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGGGAGGGCTTTCCAGCTAGGATACAGCAGCTCAGCCGTTCTGTTT  1046

seq1  GGCGGCAGAGCAGTTTGATCTGTCACTCATATGTGTCCTGGTCCAAGTGG  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCAGAGCAGTTTGATCTGTCACTCATATGTGTCCTGGTCCAAGTGG  1096

seq1  ACGATGACTTATGAAAATGTGAAATTAGAGGAATACACTGGGGCATACAC  1128
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGACTTATGAAAATGTGAAATTAGAGGAATACACTGGGGCATACAC  1146

seq1  ACTCTGTGACAGAGAATTC  1147
      |||||||||||||||||||
seq2  ACTCTGTGACAGAGAATTC  1165