BAC Information

Click to search

BAC

Clone NameB6Ng01-272F22
Chromosome18 (Build37)
Map Location 18,751,522 - 18,863,470
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040647
Downstream geneLOC100040658, LOC665624, LOC665629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272F22.bB6Ng01-272F22.g
ACCGA074215GA074216
length1,1601,093
definitionB6Ng01-272F22.b B6Ng01-272F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,862,309 - 18,863,470)(18,751,522 - 18,752,622)
sequence
gaattcattagctaattcatgtttggtgtctggttgaattaaaagttatc
tatataatttaacaagcatgtattacctagtccattttcaacttaattga
tttcttaataaaaacttgtaaacactctatctaattgacttttgagacag
tgattacaatgctgtccagcaggagagagcactcagcaaatggtgcttga
tttatgcatatcacaggcagatcttttgttttattacagtgtgtgtagac
ttgacctaaagaaatgaagactgctgtgttccagccataaaaaagcaagg
gagttctttgaaccaatatattttgttgtgtgattaaattttttaaaaag
tgattaaagatgtgtttgagagagtatttttaaaatagtttaatgtaaag
atataatattatttttaatttgtattgttatagttgcttaaataagtacc
actaaaaatgtcaaaatctatcttattttactttcttgcaaattatattt
acactaatattaataatattattaattaaaagtatgttttatgtacattt
atattttctcttacaaatcttattaatttcttgttgaataaagtttcaag
tcatttacaacagacctatttgataaagaattaatgaaaaatgggactaa
ttataaattatctggttaattcactatctttctattatgaacaatatttt
aatgtgtttgtcataatttcaattctctagaaaatgaaggttatatacta
cactcctttctctttttatttttctaaagatatctgctctaatgactagt
tttgaatgttaagtggattgtgtcagatatcagctaaaggtgaagtcaat
gaggacatttctgaaaggatcaaccagtaagagacaactcttctgattag
gcagcatcatcctgtaggagctctgatttgaggagctccaagaaattaaa
gcatttactaggtactaagattagaacaattagtattctctaggatgagc
tacataggaacagactcagacataaacacacacacacacacacacacaca
catacacagagaagtgagagaagaagtagaggagagagagagagaagaag
aggatccatccgaatatttgttcgtgccatgggattgtgataataataac
taaaataaaa
gaattccatctaatattgttttaagtatgtgtatctcttctttaaaacct
caagatatgtggatttttgtttaataaaatatacctcactgacaatcact
gccattgccctgaatatattatgaatcctttaccataatctcttttgtca
aaataagtgagacacatatataccacataagcaactcttgcagtaataag
gctgtagattttttattcatatcacaaccacaaactttgttaaatgcagt
ttattagtgaaagggaaaacatttgacccatcatcaattaaactcagtat
aaaattttagattcttcagtgtaacacacaccacaatgacacacacaatg
acacacacagtgaagcacacacacacgcaaacacacacacacacacacag
agaaagagagagagagagagagggagagagagaatcatgattatcaccaa
agagatatttggatgtgctcttttcttaattatactgtaaattcttcaca
ttttcttcataataagttcaaatattcttgacagagaagataatggttta
cattactttttatggtaaaattctagtttacacagtgttctaataataat
gaaaaagaaatagggtcacttgaatggacagtctgagtttaacacacaat
atttgtaaacacagccatttgtatatcttatcatacttcaggactcaaca
cttagattaaataatcagttaacttgttgttactagggaacaagtgactg
atttcctttcaacaaaataagagcagaaattgtgctctttgcttccttgc
tgatctttaaaatctcccacacagtgttctatactgtctctgattctttt
ggatacagagaatgcaagaggagagtctacaaaccatttatttctgggat
aagagaaagagatatgaacctgagttatattagttatattagtgttaatt
taagaatgcaataatctcattattgttatcattttcaaaaatatatagta
agatttttaggacactacattgctgtacagcagagtgctcgtctttctca
ctggggtattgtattctttatttgaatttgattgaacatattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_18862309_18863470
seq2: B6Ng01-272F22.b_45_1204 (reverse)

seq1  TTTTATTTTAGTTATTATGTAT-ACACATCCAT-GCACGAACATATATTT  48
      |||||||||||||||||| ||| |||   |||| ||||||||| ||||| 
seq2  TTTTATTTTAGTTATTAT-TATCACAATCCCATGGCACGAACAAATATT-  48

seq1  CTGTATGATCCCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTCTCA  97
        | |||   |||||   |||||||||||||| |||| ||   |||||||
seq2  -CGGATGGATCCTCTTCTTCTCTCTCTCTCTC-CTCTACTTCTTCTCTCA  96

seq1  C-TCTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGTCTGAG  146
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTTTATGTCTGAG  146

seq1  TCTGTTTCCTATTGTAGCTCATCCCTAGAGAATACTAATTGTTCTAATCT  196
      |||| |||||| |||||||||| |||||||||||||||||||||||||||
seq2  TCTG-TTCCTA-TGTAGCTCAT-CCTAGAGAATACTAATTGTTCTAATCT  193

seq1  TAGTACCTAGTAAATGCCTTAATTTCTTGGAGCTCCTCAAATCAGAGCTC  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAGTACCTAGTAAATGCTTTAATTTCTTGGAGCTCCTCAAATCAGAGCTC  243

seq1  CTACAGGATGATGCTGCCTAATCAGAAGAGTTGTCTCTTACTGGTTGATC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGATGATGCTGCCTAATCAGAAGAGTTGTCTCTTACTGGTTGATC  293

seq1  CTTTCAGAAATGTCCTCATTGACTTCACC-TTAGCTGATATCTGACACAA  345
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTTTCAGAAATGTCCTCATTGACTTCACCTTTAGCTGATATCTGACACAA  343

seq1  TCCACTTAACATTCAAAACTAGTCATTAGAGCAGATATCTTTAGAAAAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTAACATTCAAAACTAGTCATTAGAGCAGATATCTTTAGAAAAAT  393

seq1  AAAAAGAGAAAGGAGTGTAGTATATAACCTTCATTTTCTAGAGAATTGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGAAAGGAGTGTAGTATATAACCTTCATTTTCTAGAGAATTGAA  443

seq1  ATTATGACAAACACATTAAAATATTGTTCATAATAGAAAGATAGTGAATT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGACAAACACATTAAAATATTGTTCATAATAGAAAGATAGTGAATT  493

seq1  AACCAGATAATTTATAATTAGTCCCATTTTTCATTAATTCTTTATCAAAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGATAATTTATAATTAGTCCCATTTTTCATTAATTCTTTATCAAAT  543

seq1  AGGTCTGTTGTAAATGACTTGAAACTTTATTCAACAAGAAATTAATAAGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTTGTAAATGACTTGAAACTTTATTCAACAAGAAATTAATAAGA  593

seq1  TTTGTAAGAGAAAATATAAATGTACATAAAACATACTTTTAATTAATAAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGAGAAAATATAAATGTACATAAAACATACTTTTAATTAATAAT  643

seq1  ATTATTAATATTAGTGTAAATATAATTTGCAAGAAAGTAAAATAAGATAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATATTAGTGTAAATATAATTTGCAAGAAAGTAAAATAAGATAG  693

seq1  ATTTTGACATTTTTAGTGGTACTTATTTAAGCAACTATAACAATACAAAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACATTTTTAGTGGTACTTATTTAAGCAACTATAACAATACAAAT  743

seq1  TAAAAATAATATTATATCTTTACATTAAACTATTTTAAAAATACTCTCTC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATAATATTATATCTTTACATTAAACTATTTTAAAAATACTCTCTC  793

seq1  AAACACATCTTTAATCACTTTTTAAAAAATTTAATCACACAACAAAATAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCTTTAATCACTTTTTAAAAAATTTAATCACACAACAAAATAT  843

seq1  ATTGGTTCAAAGAACTCCCTTGCTTTTTTATGGCTGGAACACAGCAGTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCAAAGAACTCCCTTGCTTTTTTATGGCTGGAACACAGCAGTCT  893

seq1  TCATTTCTTTAGGTCAAGTCTACACACACTGTAATAAAACAAAAGATCTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTTTAGGTCAAGTCTACACACACTGTAATAAAACAAAAGATCTG  943

seq1  CCTGTGATATGCATAAATCAAGCACCATTTGCTGAGTGCTCTCTCCTGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGATATGCATAAATCAAGCACCATTTGCTGAGTGCTCTCTCCTGCT  993

seq1  GGACAGCATTGTAATCACTGTCTCAAAAGTCAATTAGATAGAGTGTTTAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCATTGTAATCACTGTCTCAAAAGTCAATTAGATAGAGTGTTTAC  1043

seq1  AAGTTTTTATTAAGAAATCAATTAAGTTGAAAATGGACTAGGTAATACAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTATTAAGAAATCAATTAAGTTGAAAATGGACTAGGTAATACAT  1093

seq1  GCTTGTTAAATTATATAGATAACTTTTAATTCAACCAGACACCAAACATG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTTAAATTATATAGATAACTTTTAATTCAACCAGACACCAAACATG  1143

seq1  AATTAGCTAATGAATTC  1162
      |||||||||||||||||
seq2  AATTAGCTAATGAATTC  1160

seq1: chr18_18751522_18752622
seq2: B6Ng01-272F22.g_68_1160

seq1  GAATTCCATCTAATATTGTTTTAAGTATGTGTATCTCTTCTTTAAAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTAATATTGTTTTAAGTATGTGTATCTCTTCTTTAAAACCT  50

seq1  CAAGATATGTGGATTTTTGTTTAATAAAATATACCTCACTGACAATCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATGTGGATTTTTGTTTAATAAAATATACCTCACTGACAATCACT  100

seq1  GCCATTGCCCTGAATATATTATGAATCCTTTACCATAATCTCTTTTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTGCCCTGAATATATTATGAATCCTTTACCATAATCTCTTTTGTCA  150

seq1  AAATAAGTGAGACACATATATACCACATAAGCAACTCTTGCAGTAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGAGACACATATATACCACATAAGCAACTCTTGCAGTAATAAG  200

seq1  GCTGTAGATTTTTTATTCATATCACAACCACAAACTTTGTTAAATGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGATTTTTTATTCATATCACAACCACAAACTTTGTTAAATGCAGT  250

seq1  TTATTAGTGAAAGGGAAAACATTTGACCCATCATCAATTAAACTCAGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGTGAAAGGGAAAACATTTGACCCATCATCAATTAAACTCAGTAT  300

seq1  AAAATTTTAGATTCTTCAGTGTAACACACACCACAATGACACACACAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTAGATTCTTCAGTGTAACACACACCACAATGACACACACAATG  350

seq1  ACACACACAGTGAAGCACACACACACGCAAACACACACACACACACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGTGAAGCACACACACACGCAAACACACACACACACACACAG  400

seq1  AGAAAGAGAGAGAGAGAGAGAGGGAGAGAGAGAATCATGATTATCACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAGAGAGAGAGAGGGAGAGAGAGAATCATGATTATCACCAA  450

seq1  AGAGATATTTGGATGTGCTCTTTTCTTAATTATACTGTAAATTCTTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATATTTGGATGTGCTCTTTTCTTAATTATACTGTAAATTCTTCACA  500

seq1  TTTTCTTCATAATAAGTTCAAATATTCTTGACAGAGAAGATAATGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATAATAAGTTCAAATATTCTTGACAGAGAAGATAATGGTTTA  550

seq1  CATTACTTTTTATGGTAAAATTCTAGTTTACACAGTGTTCTAATAATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTTTTTATGGTAAAATTCTAGTTTACACAGTGTTCTAATAATAAT  600

seq1  GAAAAAGAAATAGGGTCACTTGAATGGACAGTCTGAGTTTAACACACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAAATAGGGTCACTTGAATGGACAGTCTGAGTTTAACACACAAT  650

seq1  ATTTGTAAACACAGCCATTTGTATATCTTATCATACTTCAGGACTCAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAAACACAGCCATTTGTATATCTTATCATACTTCAGGACTCAACA  700

seq1  CTTAGATTAAATAATCAGTTAACTTGTTGTTACTAGGGAACAAGTGACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATTAAATAATCAGTTAACTTGTTGTTACTAGGGAACAAGTGACTG  750

seq1  ATTTCCTTTCAACAAAATAAGAGCAGAAATTGTGCTCTTTGCTTCCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTCAACAAAATAAGAGCAGAAATTGTGCTCTTTGCTTCCTTGC  800

seq1  TGATCTTTAAAATCTCCCACACAGTGTTCTATACTGTCTCTGATTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTTAAAATCTCCCACACAGTGTTCTATACTGTCTCTGATTCTTTT  850

seq1  GGATACAGAGAATGCAAGAGGAGAGTCTACAAACCATTTATTTCTGGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACAGAGAATGCAAGAGGAGAGTCTACAAACCATTTATTTCTGGGAT  900

seq1  AAGAGAAAGAGATATGAACCTGAGTTATATTAGTTATATTAGTGTTAATT  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGAGAAAGAGATATGAACCTGAGTTATATTAGTTATATTAGTGTTAA-T  949

seq1  TTAAGAATGCAATAATTCTCATTATTGTTATCATTTTCAAAAAATTATAT  1000
      ||||||||||||||| |||||||||||||||||||||||||||  |||||
seq2  TTAAGAATGCAATAA-TCTCATTATTGTTATCATTTTCAAAAA--TATAT  996

seq1  AATAA-ATTTTTAGAACAACTACATTTCCTGTTACAGCAGAGTGGTTCGT  1049
      | ||| |||||||| || |||||| || ||| ||||||||||| | ||||
seq2  AGTAAGATTTTTAGGAC-ACTACA-TTGCTG-TACAGCAGAGT-GCTCGT  1042

seq1  CTTTCTCACTGGGGTATTGTATTCTTTTATTTG-ATTTGATTTGAACATA  1098
      |||||||||||||||||||||||| |||||||| |||||| |||||||||
seq2  CTTTCTCACTGGGGTATTGTATTC-TTTATTTGAATTTGA-TTGAACATA  1090

seq1  TTT  1101
      |||
seq2  TTT  1093