BAC Information

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BAC

Clone NameB6Ng01-273N21
Chromosome18 (Build37)
Map Location 31,924,542 - 32,122,731
singlet/doubletdoublet
Overlap geneAmmecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17, Myo7b
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549
Downstream geneIws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273N21.bB6Ng01-273N21.g
ACCGA075325GA075326
length1,0421,099
definitionB6Ng01-273N21.b B6Ng01-273N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,121,684 - 32,122,731)(31,924,542 - 31,925,635)
sequence
gaattccacattcagtgagaaaccccatcttaaaaaaaaacatttgagag
caattaagaaaacacttgagtccctttaatcccagaacttgggaggcaga
ggcggatttctgagttccaggacagccaggactatacggaaaaaccctgt
cacagaaaaaaaaaaaaaaaaattcacatgaacatggatataccatacac
acacacaaaatatagggtgaatagacctcagaatagtggcttgggaagcc
tccttcccatgctaggtcctgggcctcacgtgcttcctttctgtacagtc
catggaagtgggcagcagtagtcgggtgagagacctatgtgagggcatag
gcaccaggctccagctggcctcctgggatggctgcagcctcttcatcaag
atcacagacaaggtgagcaacttggtaggccaaggagggggctgagcaag
atcctcttggctgaggaggttccccatgaccagcagacctcagcctaccc
agaagactctgctagccaggcccctcagtgcacagctggggctgttggca
caaagcaggtagagtcttggagtcccaccccctgcttgtcaatctcaatg
agcctccagcccacccagcccaaacacacagctactggatccagctcccc
cagggctccttggaggatacaccctggaagctgccatgcctgcctttccc
ctcttccctaaggtcatcagtctgaaggaaggagacttcttttttgacag
cttgaggcaggtatctgactgggtgaagaagaacaggccccagaaagaag
gtgaggagggcatctctctggaggggtggctgcctgctgcatcactgaaa
tgttccagaccctccttccattcttgatcatccccaagctcccctagaca
tgcaaatgactaacttcctgcagggtgagagaggtattccaaggtgctcc
tcacgcctgggagatgggtctaggaacatttctggagacagttctacgca
gcttgatgaaatgagttgaggcccaggaagggagaacaggga
gaattccaggagctctctgggattccctagtaccctgaatcaggttgcga
ctcctgagacaccaagtctcatagcctgaacagtgaccagagtcttgatc
tttccgtcaaacccagaccagagcccgtgaactactctaatgaatcgtat
gtatgtatggccttgagttccacctacctctgcctccgagtgcaggcatt
aaaagtgtgtgccaccaacttccagccatttagcatagttaaacatagag
ttctaggacagttagagctatgtagagagacgctgtctcagagcaaacaa
accccacaagaccataaaatagtcctttgtggtagcaggtacacaaaaga
tgttatagcttgcctgagtttgcagtcagactttggatctcagagttgga
atttgagccagagttggcagcagctagatcgttccatctaagccaagatt
ctgtcctcagaagttgggggtgtttctggttgttttgtaatgggcttttt
ttttttttttttttttgaaagagacacacagggaaaaaggaaggccattt
tgcttgtccatgtcagtcagtacagccttgtgttcttgaactaatactgg
ctttgatacttatgaatgataattatgaattatgtgaaattatttatgtt
aattcctgaaatcataaatttccacccaggcaaataaatactataatgga
ccactaaaagtcccagcatttagagcttttttttttttgtgagacagggt
ttgtcagtgtagctctggcttactctgtgaccaagagggcctcagagatc
ctcttgcttctgcctcctcagtgctgggattaaaggggtctcattttctg
gctttacatcaggcttatttaaaataagtcacacaagagccaagttgact
ttacggctgaagcatccaaattactgggataagcacttctactaaaggca
tggacccaccattggcctgaaccaatgtcttacttgcctgagaacaagac
caccttgagtactgggactctaaaggtggtgagcacagtactcaccttat
tccccaggtaagttgtatccatctgtgcagtagccctttgggtcatctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_32121684_32122731
seq2: B6Ng01-273N21.b_47_1088 (reverse)

seq1  TCCCTGTCCTCCCCTCTCCTGGGCCCTCAACTCATTTTCATCAAGCTGCG  50
      ||||||| |||||   ||||||| |||||||||| |||||||||||||||
seq2  TCCCTGTTCTCCC--TTCCTGGG-CCTCAACTCA-TTTCATCAAGCTGCG  46

seq1  TAGGAACTGTCTCCAGAAATGTCCCTAGACCCATCTCCCAGGCGTGAGGA  100
      || ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TA-GAACTGTCTCCAGAAATGTTCCTAGACCCATCTCCCAGGCGTGAGGA  95

seq1  GCACCCTTGGATACCTCTCTCACCCTGCAGGAAGTTAGTCATTTGCATGT  150
      ||||| | | ||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGGAATACCTCTCTCACCCTGCAGGAAGTTAGTCATTTGCATGT  145

seq1  CTAGGGGAGCTTGGGGATGATCAAGAATGGAAGGAGGGTCTGGAACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGAGCTTGGGGATGATCAAGAATGGAAGGAGGGTCTGGAACATTT  195

seq1  CAGTGATGCAGCAGGCAGCCACCCCCTCCAGAGAGATGCCCTCCTCACCT  250
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGTGATGCAGCAGGCAGCCA-CCCCTCCAGAGAGATGCCCTCCTCACCT  244

seq1  TCTTTCTGGGGCCTGTTCTTCTTCACCCAGTCAGATACCTGCCTCAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGGGGCCTGTTCTTCTTCACCCAGTCAGATACCTGCCTCAAGCT  294

seq1  GTCAAAAAAGAAGTCTCCTTCCTTCAGACTGATGACCTTAGGGAAGAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAAAAGAAGTCTCCTTCCTTCAGACTGATGACCTTAGGGAAGAGGG  344

seq1  GAAAGGCAGGCATGGCAGCTTCCAGGGTGTATCCTCCAAGGAGCCCTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCAGGCATGGCAGCTTCCAGGGTGTATCCTCCAAGGAGCCCTGGG  394

seq1  GGAGCTGGATCCAGTAGCTGTGTGTTTGGGCTGGGTGGGCTGGAGGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGATCCAGTAGCTGTGTGTTTGGGCTGGGTGGGCTGGAGGCTCA  444

seq1  TTGAGATTGACAAGCAGGGGGTGGGACTCCAAGACTCTACCTGCTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGATTGACAAGCAGGGGGTGGGACTCCAAGACTCTACCTGCTTTGTG  494

seq1  CCAACAGCCCCAGCTGTGCACTGAGGGGCCTGGCTAGCAGAGTCTTCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGCCCCAGCTGTGCACTGAGGGGCCTGGCTAGCAGAGTCTTCTGG  544

seq1  GTAGGCTGAGGTCTGCTGGTCATGGGGAACCTCCTCAGCCAAGAGGATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTGAGGTCTGCTGGTCATGGGGAACCTCCTCAGCCAAGAGGATCT  594

seq1  TGCTCAGCCCCCTCCTTGGCCTACCAAGTTGCTCACCTTGTCTGTGATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGCCCCCTCCTTGGCCTACCAAGTTGCTCACCTTGTCTGTGATCT  644

seq1  TGATGAAGAGGCTGCAGCCATCCCAGGAGGCCAGCTGGAGCCTGGTGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAAGAGGCTGCAGCCATCCCAGGAGGCCAGCTGGAGCCTGGTGCCT  694

seq1  ATGCCCTCACATAGGTCTCTCACCCGACTACTGCTGCCCACTTCCATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCTCACATAGGTCTCTCACCCGACTACTGCTGCCCACTTCCATGGA  744

seq1  CTGTACAGAAAGGAAGCACGTGAGGCCCAGGACCTAGCATGGGAAGGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAGAAAGGAAGCACGTGAGGCCCAGGACCTAGCATGGGAAGGAGG  794

seq1  CTTCCCAAGCCACTATTCTGAGGTCTATTCACCCTATATTTTGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAAGCCACTATTCTGAGGTCTATTCACCCTATATTTTGTGTGTGT  844

seq1  GTATGGTATATCCATGTTCATGTGAATTTTTTTTTTTTTTTTTCTGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTATATCCATGTTCATGTGAATTTTTTTTTTTTTTTTTCTGTGAC  894

seq1  AGGGTTTTTCCGTATAGTCCTGGCTGTCCTGGAACTCAGAAATCCGCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTCCGTATAGTCCTGGCTGTCCTGGAACTCAGAAATCCGCCTC  944

seq1  TGCCTCCCAAGTTCTGGGATTAAAGGGACTCAAGTGTTTTCTTAATTGCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCCAAGTTCTGGGATTAAAGGGACTCAAGTGTTTTCTTAATTGCT  994

seq1  CTCAAATGTTTTTTTTTAAGATGGGGTTTCTCACTGAATGTGGAATTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATGTTTTTTTTTAAGATGGGGTTTCTCACTGAATGTGGAATTC  1042

seq1: chr18_31924542_31925635
seq2: B6Ng01-273N21.g_65_1163

seq1  GAATTCCAGGAGCTCTCTGGGATTCCCTAGTACCCTGAATCAGGTTGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGCTCTCTGGGATTCCCTAGTACCCTGAATCAGGTTGCGA  50

seq1  CTCCTGAGACACCAAGTCTCATAGCCTGAACAGTGACCAGAGTCTTGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGAGACACCAAGTCTCATAGCCTGAACAGTGACCAGAGTCTTGATC  100

seq1  TTTCCGTCAAACCCAGACCAGAGCCCGTGAACTACTCTAATGAATCGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTCAAACCCAGACCAGAGCCCGTGAACTACTCTAATGAATCGTAT  150

seq1  GTATGTATGGCCTTGAGTTCCACCTACCTCTGCCTCCGAGTGCAGGCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGGCCTTGAGTTCCACCTACCTCTGCCTCCGAGTGCAGGCATT  200

seq1  AAAAGTGTGTGCCACCAACTTCCAGCCATTTAGCATAGTTAAACATAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTGTGTGCCACCAACTTCCAGCCATTTAGCATAGTTAAACATAGAG  250

seq1  TTCTAGGACAGTTAGAGCTATGTAGAGAGACGCTGTCTCAGAGCAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGACAGTTAGAGCTATGTAGAGAGACGCTGTCTCAGAGCAAACAA  300

seq1  ACCCCACAAGACCATAAAATAGTCCTTTGTGGTAGCAGGTACACAAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACAAGACCATAAAATAGTCCTTTGTGGTAGCAGGTACACAAAAGA  350

seq1  TGTTATAGCTTGCCTGAGTTTGCAGTCAGACTTTGGATCTCAGAGTTGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATAGCTTGCCTGAGTTTGCAGTCAGACTTTGGATCTCAGAGTTGGA  400

seq1  ATTTGAGCCAGAGTTGGCAGCAGCTAGATCGTTCCATCTAAGCCAAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGCCAGAGTTGGCAGCAGCTAGATCGTTCCATCTAAGCCAAGATT  450

seq1  CTGTCCTCAGAAGTTGGGGGTGTTTCTGGTTGTTTTGTAATGGGCTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTCAGAAGTTGGGGGTGTTTCTGGTTGTTTTGTAATGGGCTTTTT  500

seq1  TTTTTTTTTTTTTTTTGAAAGAGACACACAGGGAAAAAGGAAGGCCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTGAAAGAGACACACAGGGAAAAAGGAAGGCCATTT  550

seq1  TGCTTGTCCATGTCAGTCAGTACAGCCTTGTGTTCTTGAACTAATACTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCCATGTCAGTCAGTACAGCCTTGTGTTCTTGAACTAATACTGG  600

seq1  CTTTGATACTTATGAATGATAATTATGAATTATGTGAAATTATTTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATACTTATGAATGATAATTATGAATTATGTGAAATTATTTATGTT  650

seq1  AATTCCTGAAATCATAAATTTCCACCCAGGCAAATAAATACTATAATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGAAATCATAAATTTCCACCCAGGCAAATAAATACTATAATGGA  700

seq1  CCACTAAAAGTCCCAGCATTTAGAGC-TTTTTTTTTTTGTGAGACAGGGT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCACTAAAAGTCCCAGCATTTAGAGCTTTTTTTTTTTTGTGAGACAGGGT  750

seq1  TTGTCAGTGTAGCTCTGGCTTACTCTGTGACCAAGAGGGCCTCAGAGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGTGTAGCTCTGGCTTACTCTGTGACCAAGAGGGCCTCAGAGATC  800

seq1  CTCTTGCTTCTGCCTCCTCAGTGCTGGGATTAAAGGGGTC-CA-TCTCTG  847
      |||||||||||||||||||||||||||||||||||||||| || | ||||
seq2  CTCTTGCTTCTGCCTCCTCAGTGCTGGGATTAAAGGGGTCTCATTTTCTG  850

seq1  GCTTTACATCAGGCTTATTTAAAATAAGTCACACAAGAGCCAAG-TGACT  896
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCTTTACATCAGGCTTATTTAAAATAAGTCACACAAGAGCCAAGTTGACT  900

seq1  TTACGGCTGAAGCATCCAAATTACTGGGATAAGCACTTCTACTAAAGGCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACGGCTGAAGCATCCAAATTACTGGGATAAGCACTTCTACTAAAGGCA  950

seq1  TGGA-CCACCATTGG-CTGAACCAATGTTCTTAACTG-CTGAG-ACAAGA  992
      |||| |||||||||| ||||||||||| |||||  || ||||| ||||||
seq2  TGGACCCACCATTGGCCTGAACCAATG-TCTTACTTGCCTGAGAACAAGA  999

seq1  CCACC-TGAGTACTGGGA--CTAAAGGT-GTGAGCCACCAGTACTCACAT  1038
      ||||| ||||||||||||  |||||||| ||||||   |||||||||| |
seq2  CCACCTTGAGTACTGGGACTCTAAAGGTGGTGAGC--ACAGTACTCACCT  1047

seq1  TATTTTCCCCAAGTTAAGTTGTAT-CATCTGTGCAAAGTAAGCCTTTGGG  1087
      ||||   ||| || |||||||||| |||||||||  ||||  ||||||||
seq2  TATT---CCCCAGGTAAGTTGTATCCATCTGTGC--AGTAGCCCTTTGGG  1092

seq1  TCATCTC  1094
      |||||||
seq2  TCATCTC  1099