BAC Information

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BAC

Clone NameB6Ng01-275D01
Chromosome18 (Build37)
Map Location 86,225,390 - 86,307,058
singlet/doubletdoublet
Overlap geneLOC545270
Upstream geneLOC100039765, LOC665382, LOC545269
Downstream geneLOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275D01.bB6Ng01-275D01.g
ACCGA076296GA076297
length1,1421,106
definitionB6Ng01-275D01.b B6Ng01-275D01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,225,390 - 86,226,528)(86,305,954 - 86,307,058)
sequence
gaattctcaacagaggaatcttgaatggctgaaaagtatttaagaaatgt
tcaaagtccttattcatgagggaaatgtgaatgaagacaattctgagatt
acacccatcagaatggctaagataaaaaacagaagagctagcacatgctg
gcatggatgatgtgtaaggagaacatgtcttcattcatggtgtgagtaca
aacttgtacaaccactttgaaaatcaacttggcaatttctcagaaaactg
gaaatagttctaccttaagacacaaaagatgctccaacatcccacaaata
catttgcaggaagcaggatgtaaagtgaataagtaaaagaaattaaatta
aattaaaaaaaaataaatgcacacacagagaaccaaacatgtgcatgtat
acatggaagcccacttgtatgtgttcacacatatgtacacataatttgta
tcatatttcatgaataattaatgaggaaagctacttactaagtataccta
cttaatctttccttacgagttttttgtttgtttgtttcttttagagacac
agtctatctcagttgcttttaacagacatcatgaccaaggcaactcttgt
aaggacagcatatatttggggctggcttacaagttcagaggttcagtcta
ttatcatcaaggaaggagcatggcagtatccaggcaggcatggtgcagaa
ggaactgagagttcaacatcttcatttgaaggaggctggtggaagactaa
cttccagacagctagggtgagggttttaaagcccacacccacagagatac
acctattccaacaaggccacacctactccaacagggccacaccttttaat
actgcccattccctgagccaagcatatgcaaaccatcacagggtcttcgt
taatagctttgtcaatgacctgaagcttagatgcttttgccttagtctct
tgagtgtttgtgctgcatccctacatgaacacatacagcacagtcatttt
tcttttcaatttttattataacaataagaagcttattgcttagataaatt
ggagttttatgaagattggcatcactaaaatatctctgtcaattaaagca
ttactgactgcagcgttagtcaatcagctacacatgggtaac

gaattccagcagagtttgaggaatgcaaaccctagtagaactagggatga
aaaaatgagagtaagtttggaatgtttttcaatctacttctgggtgcttt
tgactggtccctctttgatcatagactgctgcctttgtagcctcaggaca
gacacacacacacacatacacagagagagagagagacagagagagagaga
gagacagagtcagagacagagagagacagagagacagagagagagacaga
gtgagacagagacagatagagagacagagagacgagagagatgagagaga
tgagcgagacgagagagatatctacagacaatattgtgcatttttagaaa
ttttaacattttatatgattatagacaatttttaaagcaactgttgaatt
cctttataaacttatttctcctaaatagttagcctgcattcttagtttta
atcttctctttgtctcttctcttcttggtaagtataggagaaaggataca
tttgctaaaacttgttcagtataatcaacttctgccatcattaaaatttt
ctattgaattttcatctcaattttatttgatttcttctcactttgaatct
ttattatttatttccttttaattgctttggatttgtcaggtttcaactag
tttatgaaatgcagtgcttgatatggcgaggtgggaatggagagatggct
cagcagttaacagaacatccaagttcagtcccgagcatccacatcctgag
acccacagtaactccagctccagcagcagggtgtccaatgccctcaccta
gtgtctgagggcattgcaatacatttaaagtatttattatatacataaaa
tatatacattagacatatctttaaataatataaaatgtttcacagaggaa
tattgttttataatattttaaatattcttacagctttaaacagcccttga
agttacaagttattctttccaggtggtgtacttgcctgtatccaaatcag
ttttgggtaggttgtgttttgttttcaatttatttctaaatgtttctggc
ttggccttatgattgtttatcatctgtgtagggaagatgttcattgcaca
tgtttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_86225390_86226528
seq2: B6Ng01-275D01.b_43_1184

seq1  GAATTCTCAACAGAGGAATCTTGAATGGCTGAAAAGTATTTAAGAAATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAGAGGAATCTTGAATGGCTGAAAAGTATTTAAGAAATGT  50

seq1  TCAAAGTCCTTATTCATGAGGGAAATGTGAATGAAGACAATTCTGAGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCCTTATTCATGAGGGAAATGTGAATGAAGACAATTCTGAGATT  100

seq1  ACACCCATCAGAATGGCTAAGATAAAAAACAGAAGAGCTAGCACATGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCATCAGAATGGCTAAGATAAAAAACAGAAGAGCTAGCACATGCTG  150

seq1  GCATGGATGATGTGTAAGGAGAACATGTCTTCATTCATGGTGTGAGTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGATGATGTGTAAGGAGAACATGTCTTCATTCATGGTGTGAGTACA  200

seq1  AACTTGTACAACCACTTTGAAAATCAACTTGGCAATTTCTCAGAAAACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGTACAACCACTTTGAAAATCAACTTGGCAATTTCTCAGAAAACTG  250

seq1  GAAATAGTTCTACCTTAAGACACAAAAGATGCTCCAACATCCCACAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTTCTACCTTAAGACACAAAAGATGCTCCAACATCCCACAAATA  300

seq1  CATTTGCAGGAAGCAGGATGTAAAGTGAATAAGTAAAAGAAATTAAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCAGGAAGCAGGATGTAAAGTGAATAAGTAAAAGAAATTAAATTA  350

seq1  AATTAAAAAAAAATAAATGCACACACAGAGAACCAAACATGTGCATGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAAAAAAATAAATGCACACACAGAGAACCAAACATGTGCATGTAT  400

seq1  ACATGGAAGCCCACTTGTATGTGTTCACACATATGTACACATAATTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGAAGCCCACTTGTATGTGTTCACACATATGTACACATAATTTGTA  450

seq1  TCATATTTCATGAATAATTAATGAGGAAAGCTACTTACTAAGTATACCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTTCATGAATAATTAATGAGGAAAGCTACTTACTAAGTATACCTA  500

seq1  CTTAATCTTTCCTTACGAGTTTTTTGTTTGTTTGTTTCTTTTAGAGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTTTCCTTACGAGTTTTTTGTTTGTTTGTTTCTTTTAGAGACAC  550

seq1  AGTCTATCTCAGTTGCTTTTAACAGACATCATGACCAAGGCAACTCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTATCTCAGTTGCTTTTAACAGACATCATGACCAAGGCAACTCTTGT  600

seq1  AAGGACAGCATATATTTGGGGCTGGCTTACAAGTTCAGAGGTTCAGTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACAGCATATATTTGGGGCTGGCTTACAAGTTCAGAGGTTCAGTCTA  650

seq1  TTATCATCAAGGAAGGAGCATGGCAGTATCCAGGCAGGCATGGTGCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCAAGGAAGGAGCATGGCAGTATCCAGGCAGGCATGGTGCAGAA  700

seq1  GGAACTGAGAGTTCAACATCTTCATTTGAAGGAGGCTGGTGGAAGACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGAGAGTTCAACATCTTCATTTGAAGGAGGCTGGTGGAAGACTAA  750

seq1  CTTCCAGACAGCTAGGGTGAGGGTTTTAAAGCCCACACCCACAGAGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGACAGCTAGGGTGAGGGTTTTAAAGCCCACACCCACAGAGATAC  800

seq1  ACCTATTCCAACAAGGCCACACCTACTCCAACAGGGCCACACCTTTTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTCCAACAAGGCCACACCTACTCCAACAGGGCCACACCTTTTAAT  850

seq1  ACTGCCCATTCCCTGAGCCAAGCATATGCAAACCATCACAGGGTCTTCGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCATTCCCTGAGCCAAGCATATGCAAACCATCACAGGGTCTTCGT  900

seq1  TAATAGCTTTGTCAATGACCTGAAGCTTAGATGCTTTTGCCTTAGTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCTTTGTCAATGACCTGAAGCTTAGATGCTTTTGCCTTAGTCTCT  950

seq1  TGAGTGTTTGTGCTGCATCCCTACATGAACACATACAGCACAGTCATTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTTGTGCTGCATCCCTACATGAACACATACAGCACAGTCATTTT  1000

seq1  --CTTTCAATTTTTATATAAACAAT-AGAAGC-TATTGCTTAGATAAA-T  1045
         |||||||||||||   |||||| |||||| ||||||||||||||| |
seq2  TCTTTTCAATTTTTATTATAACAATAAGAAGCTTATTGCTTAGATAAATT  1050

seq1  GGAGTTTTAATGAGATTTGCATCACTAAAATATCTCTGTTCAATAAAAGC  1095
      |||||||||   ||||| |||||||||||||||||||| ||||| |||||
seq2  GGAGTTTTATGAAGATTGGCATCACTAAAATATCTCTG-TCAATTAAAGC  1099

seq1  AATACTGACTGCAGCGTAATTCCATTCAGGCTACACAT-GGTAAC  1139
      | ||||||||||||||| | | || ||| ||||||||| ||||||
seq2  ATTACTGACTGCAGCGTTAGT-CAATCA-GCTACACATGGGTAAC  1142


seq1: chr18_86305954_86307058
seq2: B6Ng01-275D01.g_65_1170 (reverse)

seq1  CAAACATGTGAAAATGAAACAATCTCCTAAACAACAGATGGATTAAACAA  50
      ||||||||||  ||||||   |||| |   || |||||||   ||||| |
seq2  CAAACATGTG-CAATGAA--CATCTTCCCTAC-ACAGATG--ATAAAC-A  43

seq1  ATCATAAGGCAAACCAAGAAACATTTAGAAATAAA-TGAAAACAAAACAC  99
      |||||||||| || | ||||||||||||||||||| ||||||||||||||
seq2  ATCATAAGGCCAAGCCAGAAACATTTAGAAATAAATTGAAAACAAAACAC  93

seq1  AACCTA-CCAAAACTGA-TTGGATACA-GCAAGTACAC--ACTGG-AAGA  143
      |||||| |||||||||| ||||||||| ||||||||||   |||| ||||
seq2  AACCTACCCAAAACTGATTTGGATACAGGCAAGTACACCACCTGGAAAGA  143

seq1  ATAACTTGTAACTTCAA-GGCTGTTTAAAGCTGTAAGAATATTTAAAATA  192
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATAACTTGTAACTTCAAGGGCTGTTTAAAGCTGTAAGAATATTTAAAATA  193

seq1  TTATAAAACAATATTCCTCTGTGAAACATTTTATATTATTTAAAGATATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAACAATATTCCTCTGTGAAACATTTTATATTATTTAAAGATATG  243

seq1  TCTAATGTATATATTTTATGTATATAATAAATACTTTAAATGTATTGCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTATATATTTTATGTATATAATAAATACTTTAAATGTATTGCAA  293

seq1  TGCCCTCAGACACTAGGTGAGGGCATTGGACACCCTGCTGCTGGAGCTGG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCAGACACTAGGTGAGGGCATTGGACACCCTGCTGCTGGAGCTGG  343

seq1  AGTTACTGTGGGTCTCAGGATGTGGATGCTCGGGACTGAACTTGGATGTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTGTGGGTCTCAGGATGTGGATGCTCGGGACTGAACTTGGATGTT  393

seq1  CTGTTAACTGCTGAGCCATCTCTCCATTCCCACCTCGCCATATCAAGCAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACTGCTGAGCCATCTCTCCATTCCCACCTCGCCATATCAAGCAC  443

seq1  TGCATTTCATAAACTAGTTGAAACCTGACAAATCCAAAGCAATTAAAAGG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTTCATAAACTAGTTGAAACCTGACAAATCCAAAGCAATTAAAAGG  493

seq1  AAATAAATAATAAAGATTCAAAGTGAGAAGAAATCAAATAAAATTGAGAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAATAAAGATTCAAAGTGAGAAGAAATCAAATAAAATTGAGAT  543

seq1  GAAAATTCAATAGAAAATTTTAATGATGGCAGAAGTTGATTATACTGAAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTCAATAGAAAATTTTAATGATGGCAGAAGTTGATTATACTGAAC  593

seq1  AAGTTTTAGCAAATGTATCCTTTCTCCTATACTTACCAAGAAGAGAAGAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGCAAATGTATCCTTTCTCCTATACTTACCAAGAAGAGAAGAG  643

seq1  ACAAAGAGAAGATTAAAACTAAGAATGCAGGCTAACTATTTAGGAGAAAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAGAAGATTAAAACTAAGAATGCAGGCTAACTATTTAGGAGAAAT  693

seq1  AAGTTTATAAAGGAATTCAACAGTTGCTTTAAAAATTGTCTATAATCATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATAAAGGAATTCAACAGTTGCTTTAAAAATTGTCTATAATCATA  743

seq1  TAAAATGTTAAAATTTCTAAAAATGCACAATATTGTCTGTAGATATCTCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTAAAATTTCTAAAAATGCACAATATTGTCTGTAGATATCTCT  793

seq1  CTCGTCTCGCTCATCTCTCTCATCTCTCTCGTCTCTCTGTCTCTCTATCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTCTCGCTCATCTCTCTCATCTCTCTCGTCTCTCTGTCTCTCTATCT  843

seq1  GTCTCTGTCTCACTCTGTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGTCTCACTCTGTCTCTCTCTCTGTCTCTCTGTCTCTCTCTGTCT  893

seq1  CTGACTCTGTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTGTATGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTGTCTCTCTCTCTCTCTCTGTCTCTCTCTCTCTCTGTGTATGT  943

seq1  GTGTGTGTGTGTCTGTCCTGAGGCTACAAAGGCAGCAGTCTATGATCAAA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCTGTCCTGAGGCTACAAAGGCAGCAGTCTATGATCAAA  993

seq1  GAGGGACCAGTCAAAAGCACCCAGAAGTAGATTGAAAAACATTCCAAACT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGACCAGTCAAAAGCACCCAGAAGTAGATTGAAAAACATTCCAAACT  1043

seq1  TACTCTCATTTTTTCATCCCTAGTTCTACTAGGGTTTGCATTCCTCAAAC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCATTTTTTCATCCCTAGTTCTACTAGGGTTTGCATTCCTCAAAC  1093

seq1  TCTGCTGGAATTC  1105
      |||||||||||||
seq2  TCTGCTGGAATTC  1106


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