BAC Information

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BAC

Clone NameB6Ng01-276N08
Chromosome18 (Build37)
Map Location 88,880,901 - 89,003,318
singlet/doubletdoublet
Overlap geneLOC665497, LOC100040003, LOC623208
Upstream geneLOC329008, LOC100039961, LOC100039972, LOC623177
Downstream geneSocs6, Rttn, Cd226, Dok6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276N08.bB6Ng01-276N08.g
ACCGA077513GA077514
length1,1241,109
definitionB6Ng01-276N08.b B6Ng01-276N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,002,184 - 89,003,318)(88,880,901 - 88,882,013)
sequence
gaattctaggagaaagcagctgcaggtacaggggtgtctcttctgacttt
aatgaactgtggtctgtggttgatgatatatcctcagaatgaacacttgt
ggcgttcaccagtggctgtttatttgaagtttatagttggtactcttgag
ttcctttcagtgcaatcaaagggatttgaaatgacagtaagttttacagg
tagtgtggcttaaatataaagtgaccctggactcatgttttagacaccag
aaagtatttttacttaggtacctaatggagctatatagctaggccccttc
ctgtattattttctacttcctggttggtcacaaagtgagcagctctcctc
tattacatgtgccctaccaatatagtgttttttctaagcatatggggcca
agtggccaaagcctgaaatctcaaattgtgggccaaaataaatctaagtt
tttcacgtatttttatcgcagtgacagaaaagcaacaaatacaacagagt
aaacagaaattctttggttcatccatgttgtacttgagtgggcaagtttc
ttagggtgaggcacttgtaagtgtgtggaggtgttagaaattggtaatga
atgggtggctttatgactggctctccaattcatcccacagtatttgtttg
ctcatgctccacatgcacatgggagtggcactcatgtttagcctcatggg
tcttgttcctactaaaagaatatctagtcctaaccttgagtgaggggtgt
ggaacataagcctgttttgtgtgattattaatctcatctatcagctacct
ttccagcctatgtcaatacctgaaataaagaagcattggtaaatatttct
gcaatatacaataaatattttttcaggaaggctgtcacaatagtttaagt
ttctttctttttgtactgaatagtttgttttttttttaaaccagcagatt
ttgtttataattactacatgtacactattgtttctgaacctctcttcctt
catcttcttctgttaattgaccaccccaagcccctataaatctttccttg
tatactaattttgtttgttactgatcaacgagttaataagggctactgtg
ttgtctaagttggaactaaccatc

gaattccttaaccagacccaggggagttgggactggatggatgtggttgg
gatgacaagccaaggaatattcctaaggaacaaaaattacttgattcatc
taagttaaatcttaaagaatagagaatttaaagaatatgaaattaaagaa
tttcacaaagtaaaaacgaggacaaaggaaagggcaaatgtgcctccagg
aagaataaaagcttcacatgaaatgaaaagagtatttctgtgatgacagg
aaagcttgccgtcgtacaggacttttgaagtggaaagcagtgcaactctt
tttacaaggtaatattcctctgaaatcctcacctccctgtggcctgctgg
aactggcctgcaccctgtttccttcatgtcctcttgaatcactcagctat
acatgtaaggatctgccattgcctggcactgctacagatcctgccgatat
gaaagcaacaagcaagaacgtatgcagtcttgaagaaacagttattttaa
tgatctaaaataaaactagtaagtatttttaaagtgaaagttctcattca
ttagaaaaaggtactcattgtgaatgataaaaaaaaaaaaggaattgtgg
caaatgataatccagtaacaaaggagaatctgcccaaggtagctattgac
atttaactgaatcaaaactgcataggatcttaacatcagctgtatggtag
cactcaccacatctcagtgttcaaggcctgtgtgtggctagcagagagaa
cagagtaggcaaaaaaaaaaaaaaaaaaaacatttccagaattgggacaa
ctccataagacaggaataatctttaaaattccccataactgacagagaga
tccattgtctgatagttaacatgatacactcactaacttccacataaact
tattacactaagatttagcaagttcacagttctttctgaatcatggtgtc
atctcagcatgttttgtgaatgaccctttttggagtgggtggttcacatt
ttgggacataaaactaaatgttctttttcctgacttgtgtctaagatttc
tttgcatgacacagaggttaagaaagattgaatgattatttttagagggg
atgttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_89002184_89003318
seq2: B6Ng01-276N08.b_44_1167 (reverse)

seq1  GATGGTTAGTTCCAAACTTAGGACAACACAGGTAGCCCTTATTAAACTCT  50
      ||||||||||||| |||||| ||||||||| |||||||||||| ||||| 
seq2  GATGGTTAGTTCC-AACTTA-GACAACACA-GTAGCCCTTATT-AACTC-  45

seq1  GTGGATCAGTAAACAAAACCAAAATTAGTATACAAGGGGAAAAGATTTAT  100
      || ||||||| ||||||  ||||||||||||||||||   ||||||||||
seq2  GTTGATCAGT-AACAAA--CAAAATTAGTATACAAGG---AAAGATTTAT  89

seq1  AGGGGCTTGGGGGTGGTCAATAAACAGAAGAAGATGAAGGAAGAGAGGGT  150
      |||||||| |||||||||||| |||||||||||||||||||||||| |||
seq2  AGGGGCTT-GGGGTGGTCAATTAACAGAAGAAGATGAAGGAAGAGA-GGT  137

seq1  TCAGAACAAATAGTGTACATGTAGTAATTATAAACAAAATCTGCTGGTTT  200
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAACAATAGTGTACATGTAGTAATTATAAACAAAATCTGCTGGTTT  187

seq1  -AAAAAAAAACAAACTATTCAGTACAAAAAGAAAGAAACTTAAACTATTG  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACAAACTATTCAGTACAAAAAGAAAGAAACTTAAACTATTG  237

seq1  TGACAGCCTTCCTG-AAAAATATTTATTGTATATTGCAGAAATATTTACC  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGACAGCCTTCCTGAAAAAATATTTATTGTATATTGCAGAAATATTTACC  287

seq1  AATGCTTCTTTATTTCAGGTATTGACATAGGCTGGAAAGGTAGCTGATAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTTTATTTCAGGTATTGACATAGGCTGGAAAGGTAGCTGATAG  337

seq1  ATGAGATTAATAATCACACAAAACAGGCTTATGTTCCACACCCCTCACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTAATAATCACACAAAACAGGCTTATGTTCCACACCCCTCACTC  387

seq1  AAGGTTAGGACTAGATATTCTTTTAGTAGGAACAAGACCCATGAGGCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTAGGACTAGATATTCTTTTAGTAGGAACAAGACCCATGAGGCTAA  437

seq1  ACATGAGTGCCACTCCCATGTGCATGTGGAGCATGAGCAAACAAATACTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGTGCCACTCCCATGTGCATGTGGAGCATGAGCAAACAAATACTG  487

seq1  TGGGATGAATTGGAGAGCCAGTCATAAAGCCACCCATTCATTACCAATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGAATTGGAGAGCCAGTCATAAAGCCACCCATTCATTACCAATTT  537

seq1  CTAACACCTCCACACACTTACAAGTGCCTCACCCTAAGAAACTTGCCCAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACCTCCACACACTTACAAGTGCCTCACCCTAAGAAACTTGCCCAC  587

seq1  TCAAGTACAACATGGATGAACCAAAGAATTTCTGTTTACTCTGTTGTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTACAACATGGATGAACCAAAGAATTTCTGTTTACTCTGTTGTATT  637

seq1  TGTTGCTTTTCTGTCACTGCGATAAAAATACGTGAAAAACTTAGATTTAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTTCTGTCACTGCGATAAAAATACGTGAAAAACTTAGATTTAT  687

seq1  TTTGGCCCACAATTTGAGATTTCAGGCTTTGGCCACTTGGCCCCATATGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCCACAATTTGAGATTTCAGGCTTTGGCCACTTGGCCCCATATGC  737

seq1  TTAGAAAAAACACTATATTGGTAGGGCACATGTAATAGAGGAGAGCTGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAACACTATATTGGTAGGGCACATGTAATAGAGGAGAGCTGCT  787

seq1  CACTTTGTGACCAACCAGGAAGTAGAAAATAATACAGGAAGGGGCCTAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTGTGACCAACCAGGAAGTAGAAAATAATACAGGAAGGGGCCTAGC  837

seq1  TATATAGCTCCATTAGGTACCTAAGTAAAAATACTTTCTGGTGTCTAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTCCATTAGGTACCTAAGTAAAAATACTTTCTGGTGTCTAAAA  887

seq1  CATGAGTCCAGGGTCACTTTATATTTAAGCCACACTACCTGTAAAACTTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTCCAGGGTCACTTTATATTTAAGCCACACTACCTGTAAAACTTA  937

seq1  CTGTCATTTCAAATCCCTTTGATTGCACTGAAAGGAACTCAAGAGTACCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATTTCAAATCCCTTTGATTGCACTGAAAGGAACTCAAGAGTACCA  987

seq1  ACTATAAACTTCAAATAAACAGCCACTGGTGAACGCCACAAGTGTTCATT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATAAACTTCAAATAAACAGCCACTGGTGAACGCCACAAGTGTTCATT  1037

seq1  CTGAGGATATATCATCAACCACAGACCACAGTTCATTAAAGTCAGAAGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGATATATCATCAACCACAGACCACAGTTCATTAAAGTCAGAAGAG  1087

seq1  ACACCCCTGTACCTGCAGCTGCTTTCTCCTAGAATTC  1135
      |||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTGTACCTGCAGCTGCTTTCTCCTAGAATTC  1124


seq1: chr18_88880901_88882013
seq2: B6Ng01-276N08.g_66_1174

seq1  GAATTCCTTAACCAGACCCAGGGGAGTTGGGACTGGATGGATGTGGTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAACCAGACCCAGGGGAGTTGGGACTGGATGGATGTGGTTGG  50

seq1  GATGACAAGCCAAGGAATATTCCTAAGGAACAAAAATTACTTGATTCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAAGCCAAGGAATATTCCTAAGGAACAAAAATTACTTGATTCATC  100

seq1  TAAGTTAAATCTTAAAGAATAGAGAATTTAAAGAATATGAAATTAAAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTAAATCTTAAAGAATAGAGAATTTAAAGAATATGAAATTAAAGAA  150

seq1  TTTCACAAAGTAAAAACGAGGACAAAGGAAAGGGCAAATGTGCCTCCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAAGTAAAAACGAGGACAAAGGAAAGGGCAAATGTGCCTCCAGG  200

seq1  AAGAATAAAAGCTTCACATGAAATGAAAAGAGTATTTCTGTGATGACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAAGCTTCACATGAAATGAAAAGAGTATTTCTGTGATGACAGG  250

seq1  AAAGCTTGCCGTCGTACAGGACTTTTGAAGTGGAAAGCAGTGCAACTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTTGCCGTCGTACAGGACTTTTGAAGTGGAAAGCAGTGCAACTCTT  300

seq1  TTTACAAGGTAATATTCCTCTGAAATCCTCACCTCCCTGTGGCCTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGGTAATATTCCTCTGAAATCCTCACCTCCCTGTGGCCTGCTGG  350

seq1  AACTGGCCTGCACCCTGTTTCCTTCATGTCCTCTTGAATCACTCAGCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCCTGCACCCTGTTTCCTTCATGTCCTCTTGAATCACTCAGCTAT  400

seq1  ACATGTAAGGATCTGCCATTGCCTGGCACTGCTACAGATCCTGCCGATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTAAGGATCTGCCATTGCCTGGCACTGCTACAGATCCTGCCGATAT  450

seq1  GAAAGCAACAAGCAAGAACGTATGCAGTCTTGAAGAAACAGTTATTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAACAAGCAAGAACGTATGCAGTCTTGAAGAAACAGTTATTTTAA  500

seq1  TGATCTAAAATAAAACTAGTAAGTATTTTTAAAGTGAAAGTTCTCATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAAAATAAAACTAGTAAGTATTTTTAAAGTGAAAGTTCTCATTCA  550

seq1  TTAGAAAAAGGTACTCATTGTGAATGATAAAAAAAAAAAAGGAATTGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAAGGTACTCATTGTGAATGATAAAAAAAAAAAAGGAATTGTGG  600

seq1  CAAATGATAATCCAGTAACAAAGGAGAATCTGCCCAAGGTAGCTATTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGATAATCCAGTAACAAAGGAGAATCTGCCCAAGGTAGCTATTGAC  650

seq1  ATTTAACTGAATCAAAACTGCATAGGATCTTAACATCAGCTGTATGGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAACTGAATCAAAACTGCATAGGATCTTAACATCAGCTGTATGGTAG  700

seq1  CACTCACCACATCTCAGTGTTCAAGGCCTGTGTGTGGCTAGCAGAGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACCACATCTCAGTGTTCAAGGCCTGTGTGTGGCTAGCAGAGAGAA  750

seq1  CAGAGTAGGCAAAAAAAAAAAAAAAAAAAACATTTCCAGAATTGGGACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAGGCAAAAAAAAAAAAAAAAAAAACATTTCCAGAATTGGGACAA  800

seq1  CTCCATAAGACAGGAATAATCTTTAAAATTCCCCATAACTGACAGAGAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATAAGACAGGAATAATCTTTAAAATTCCCCATAACTGACAGAGAGA  850

seq1  TCCATTGTCTGATAGTTAACATGATACACTCACTAACTTCCACATAAAC-  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCATTGTCTGATAGTTAACATGATACACTCACTAACTTCCACATAAACT  900

seq1  TATTACACTAAGATTTAGCAAGTTCACAGTTCTTTCTGAATCATGGTGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACACTAAGATTTAGCAAGTTCACAGTTCTTTCTGAATCATGGTGTC  950

seq1  ATCTCAGCATGTTTTGTGAATGACCCTTTTT-GAGT-GGTGGTTCACATT  997
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  ATCTCAGCATGTTTTGTGAATGACCCTTTTTGGAGTGGGTGGTTCACATT  1000

seq1  TT-GGACATAAAACTAAATGTTC-TTTTCCTGACTTTGTGTCTAAGATTT  1045
      || |||||||||||||||||||| |||||||||| |||||||||||||||
seq2  TTGGGACATAAAACTAAATGTTCTTTTTCCTGAC-TTGTGTCTAAGATTT  1049

seq1  CTTTGCAATGACAACCAAGAGG-TAAGAAAGATTTGAAATGATTATTTTT  1094
      |||||| ||||||    ||||| |||||||||||   |||||||||||||
seq2  CTTTGC-ATGACA---CAGAGGTTAAGAAAGATT--GAATGATTATTTTT  1093

seq1  AAGAGGGGGATGTTTCTGA  1113
       ||| ||||||| ||||||
seq2  -AGA-GGGGATG-TTCTGA  1109


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