BAC Information

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BAC

Clone NameB6Ng01-279A01
Chromosome18 (Build37)
Map Location 83,782,617 - 83,938,823
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik, LOC665284
Downstream geneTshz1, Zadh2, LOC669856, Zfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279A01.bB6Ng01-279A01.g
ACCGA079097GA079098
length1,1511,096
definitionB6Ng01-279A01.b B6Ng01-279A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,782,617 - 83,783,752)(83,937,728 - 83,938,823)
sequence
gaattcctcgcacaaaatcctgctcactagttttttttttttcctttacc
tttgtaaatgattgtaactaaaattagggaacagcatgtgtcagaagaac
tactattttctccctccttttgtcttggtttggtgaatagcaatgatgac
cttgcaaaaacaagcattggtaccagaagaagtgtgaattgcaaagcaca
cgtcacgtgaaagtcacgatgtccccgctacatcttttaatgcctttaag
tccccttgagcaccacaggtcaaatgtaaatttcatcgtgaaatgagatt
gaataaatggccaactccgtgagaaatctgtcttccttacctggctctac
attgcttcctctaatcatgtttaagacaccactttctgacagtgccttca
aagaatgtttcacagagagagtatcgttctcaaaaagaaaaatagacagt
gacagagcttctggataaaatcctgtgatttcatttactaaagaacatca
acagtcaaataaggtcatgttaagaaaacttgaaggaaacagaaaattta
attggaggtatagataccatgatttaataattggaggcaaccttagacac
ggtaatagtatcttccatagtggccaacgtaccttacagatatacttcct
ttgtttctaattaattaatttctttgtttgtttgtttacatcccaaacac
tgccctcgctcctggtcgccccctcacatactcactcctccatgcccctc
cccttcacctctaagagggtgccccacagcgtatccctccaccctggctc
atcacctctctacaggattaggtgcatcttcttctactgaggccagacaa
gataacctttctgctacgtatgtgccaggggcctcagaacagtccatgaa
tgctctttggtttggtggctcagtctctgagaactctcgggagatccagg
ttaatttagcccctgttcgtcttccctttggggtttccataccccttcag
agccttcaatccctttcctcaactcttcaataaggaacccaacttcttca
gttcagctgctaagtagaagttctttccatgggacagtttattgctagat
gcttatatttgaatagcataacagaagattcattataggtgtctgggact
g
gaattctgagattcagggttaacatatcaatatctggatttgggtcacac
agagtggggtacccatcactgtctttgattttgtttctttagcaattcct
cccttctactgtacttctctgtggacttccctggcaaacttgccttcctg
tgggtctcagatttctaccaggtcctcgctcagtctctggcgtgatactt
ccttctgtgaacccactttctctgtaacctttcatcctggctgtctcctc
tcttcttctattccatcccaagtgactacccttcatttatttatcttggc
tggaattaccagcttatttcttttatttcccctttgcctctggtgcttaa
cactggaccatctgtgccacttttacttactattaaattcaccaaatgct
tcctgacacctactacgtgttaggttctgtgtgagggaagccttgccaga
ggcagatggagacaacctagatgcccctccaaggcacagggttttaccgg
gaacttagaccctcagacttgtagccaatcctgagtcggtgttggccaaa
cagagagtggttgacagtgttcttggacccatctcgactgcaggaagcac
acccagactttagccacactagggtggtacccactttgtgaaaaaccaaa
gaaggttgttgaggctctggtctaacaaacaagagatccatgaacacagc
cactgtcacggtgaccgtgaatgttgagaaaaggttcaggaaggatgcgt
gacccaacagtggtgtgctcttgaaggtctaagtgctggccagggtggag
aactcaggaaagagggaagcagaagaaagagaaaccgtgggaagtgatgg
gggacctcagagacagtgggagggcaggacacacagcgattttgcctgga
tgttcgggcatgactgcgaaggtgctccatgctgcatacagtgtgagtgg
gcctaggtagtttctaggccaagaatgggcttaaggaagccacctgggta
ggtgtaaatcgggcttccctaagaaaggatggattggatgcacagatatt
atgcactatcccttgctagacttatgacgattagccacccacacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_83782617_83783752
seq2: B6Ng01-279A01.b_45_1195

seq1  GAATTCCTCGCACAAAATCCTGCTCACTAGTTTTTTTTTTTTCCTTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCGCACAAAATCCTGCTCACTAGTTTTTTTTTTTTCCTTTACC  50

seq1  TTTGTAAATGATTGTAACTAAAATTAGGGAACAGCATGTGTCAGAAGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAATGATTGTAACTAAAATTAGGGAACAGCATGTGTCAGAAGAAC  100

seq1  TACTATTTTCTCCCTCCTTTTGTCTTGGTTTGGTGAATAGCAATGATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTTCTCCCTCCTTTTGTCTTGGTTTGGTGAATAGCAATGATGAC  150

seq1  CTTGCAAAAACAAGCATTGGTACCAGAAGAAGTGTGAATTGCAAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAAAACAAGCATTGGTACCAGAAGAAGTGTGAATTGCAAAGCACA  200

seq1  CGTCACGTGAAAGTCACGATGTCCCCGCTACATCTTTTAATGCCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACGTGAAAGTCACGATGTCCCCGCTACATCTTTTAATGCCTTTAAG  250

seq1  TCCCCTTGAGCACCACAGGTCAAATGTAAATTTCATCGTGAAATGAGATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTGAGCACCACAGGTCAAATGTAAATTTCATCGTGAAATGAGATT  300

seq1  GAATAAATGGCCAACTCCGTGAGAAATCTGTCTTCCTTACCTGGCTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAATGGCCAACTCCGTGAGAAATCTGTCTTCCTTACCTGGCTCTAC  350

seq1  ATTGCTTCCTCTAATCATGTTTAAGACACCACTTTCTGACAGTGCCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCCTCTAATCATGTTTAAGACACCACTTTCTGACAGTGCCTTCA  400

seq1  AAGAATGTTTCACAGAGAGAGTATCGTTCTCAAAAAGAAAAATAGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTTTCACAGAGAGAGTATCGTTCTCAAAAAGAAAAATAGACAGT  450

seq1  GACAGAGCTTCTGGATAAAATCCTGTGATTTCATTTACTAAAGAACATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGCTTCTGGATAAAATCCTGTGATTTCATTTACTAAAGAACATCA  500

seq1  ACAGTCAAATAAGGTCATGTTAAGAAAACTTGAAGGAAACAGAAAATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCAAATAAGGTCATGTTAAGAAAACTTGAAGGAAACAGAAAATTTA  550

seq1  ATTGGAGGTATAGATACCATGATTTAATAATTGGAGGCAACCTTAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAGGTATAGATACCATGATTTAATAATTGGAGGCAACCTTAGACAC  600

seq1  GGTAATAGTATCTTCCATAGTGGCCAACGTACCTTACAGATATACTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATAGTATCTTCCATAGTGGCCAACGTACCTTACAGATATACTTCCT  650

seq1  TTGTTTCTAATTAATTAATTTCTTTGTTTGTTTGTTTACATCCCAAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTAATTAATTAATTTCTTTGTTTGTTTGTTTACATCCCAAACAC  700

seq1  TGCCCTCGCTCCTGGTCGCCCCCTCACATACTCACTCCTCCATGCCCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCGCTCCTGGTCGCCCCCTCACATACTCACTCCTCCATGCCCCTC  750

seq1  CCCTTCACCTCTAAGAGGGTGCCCCACAGCGTATCCCTCCACCCTGGCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACCTCTAAGAGGGTGCCCCACAGCGTATCCCTCCACCCTGGCTC  800

seq1  ATCACCTCTCTACAGGATTAGGTGCATCTTCTTCTACTGAGGCCAGACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCTCTACAGGATTAGGTGCATCTTCTTCTACTGAGGCCAGACAA  850

seq1  GATAACC-TTCTGCTACGTATGTGCCAGGGGCCTCAGAACAGTCCATGAA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTTTCTGCTACGTATGTGCCAGGGGCCTCAGAACAGTCCATGAA  900

seq1  TGCTCTTTGG-TTGGTGGCTCAGTCTCTGAGAACTCTC-GGAGATCCAGG  947
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  TGCTCTTTGGTTTGGTGGCTCAGTCTCTGAGAACTCTCGGGAGATCCAGG  950

seq1  TTAA-TTAG-CCCTGTTCGTCTT-CCTTTGGGGTTTCCATA-CCCTTCAG  993
      |||| |||| ||||||||||||| ||||||||||||||||| ||||||||
seq2  TTAATTTAGCCCCTGTTCGTCTTCCCTTTGGGGTTTCCATACCCCTTCAG  1000

seq1  AGCCTTCAAT-CCTTTCCTCAACTCTTCCATAAGGAACCCCAACTTCCTC  1042
      |||||||||| ||||||||||||||||| |||||||| ||||||||| ||
seq2  AGCCTTCAATCCCTTTCCTCAACTCTTCAATAAGGAA-CCCAACTTCTTC  1049

seq1  AG-TCAGCTGCTAGGTAGA--GTCTTT-CATGGGACAGTT--ATGCTAGA  1086
      || |||||||||| |||||   ||||| ||||||||||||   |||||| 
seq2  AGTTCAGCTGCTAAGTAGAAGTTCTTTCCATGGGACAGTTTATTGCTAG-  1098

seq1  ATGC-TATATGTG-ATAGCATAACAG-AGAATCATTAATAGTGCCTGGGA  1133
      |||| ||||| || |||||||||||| ||| ||||||   ||| ||||||
seq2  ATGCTTATATTTGAATAGCATAACAGAAGATTCATTATAGGTGTCTGGGA  1148

seq1  CTG  1136
      |||
seq2  CTG  1151

seq1: chr18_83937728_83938823
seq2: B6Ng01-279A01.g_70_1165 (reverse)

seq1  TAGTGTGGTGGACTAATC-TAATAAATCTAGCAATGTATATTGCATTATA  49
      ||||||||  | |||||| | |||| |||||||| | ||| ||||| |||
seq2  TAGTGTGGGTGGCTAATCGTCATAAGTCTAGCAAGGGATAGTGCATAATA  50

seq1  TCTGTGCATTCCATCCATTCTTTTTCTCTAGGGAACCCCGATTAACACCT  99
      ||||||||| | |||||| |||| |   ||||||| ||||||| ||||| 
seq2  TCTGTGCATCCAATCCATCCTTTCT---TAGGGAAGCCCGATTTACACC-  96

seq1  TACCCA-GTGGCCTCCCTTAGCCCATCCTTGGCCTAGAAAACTACCTAGG  148
      |||||| ||||| ||| | ||||||| |||||||||| ||||||||||||
seq2  TACCCAGGTGGCTTCCTTAAGCCCATTCTTGGCCTAG-AAACTACCTAGG  145

seq1  -CCACTCACACTGTATGCAGCATGGAGCACCTTCGCAGTCATGCCCGACC  197
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CCCACTCACACTGTATGCAGCATGGAGCACCTTCGCAGTCATGCCCGAAC  195

seq1  ATCCAGGC-AAATCGCTGTGTGTCCTGCCCTCCCACTGTCTCTGAGGTCC  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCAAAATCGCTGTGTGTCCTGCCCTCCCACTGTCTCTGAGGTCC  245

seq1  CCCATCACTT-CCACGGTTTCTCTTTCTTCTGCTTCCCTCTTTCCTGAGT  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCCATCACTTCCCACGGTTTCTCTTTCTTCTGCTTCCCTCTTTCCTGAGT  295

seq1  TCTCCACCCTGGCCAGCACTTAGACCTTCAAGAGCACACCACTGTTGGGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCACCCTGGCCAGCACTTAGACCTTCAAGAGCACACCACTGTTGGGT  345

seq1  CACGCATCCTTCCTGAACCTTTTCTCAACATTCACGGTCACCGTGACAGT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCATCCTTCCTGAACCTTTTCTCAACATTCACGGTCACCGTGACAGT  395

seq1  GGCTGTGTTCATGGATCTCTTGTTTGTTAGACCAGAGCCTCAACAACCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTTCATGGATCTCTTGTTTGTTAGACCAGAGCCTCAACAACCTT  445

seq1  CTTTGGTTTTTCACAAAGTGGGTACCACCCTAGTGTGGCTAAAGTCTGGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTTTTCACAAAGTGGGTACCACCCTAGTGTGGCTAAAGTCTGGG  495

seq1  TGTGCTTCCTGCAGTCGAGATGGGTCCAAGAACACTGTCAACCACTCTCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCCTGCAGTCGAGATGGGTCCAAGAACACTGTCAACCACTCTCT  545

seq1  GTTTGGCCAACACCGACTCAGGATTGGCTACAAGTCTGAGGGTCTAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCCAACACCGACTCAGGATTGGCTACAAGTCTGAGGGTCTAAGTT  595

seq1  CCCGGTAAAACCCTGTGCCTTGGAGGGGCATCTAGGTTGTCTCCATCTGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGTAAAACCCTGTGCCTTGGAGGGGCATCTAGGTTGTCTCCATCTGC  645

seq1  CTCTGGCAAGGCTTCCCTCACACAGAACCTAACACGTAGTAGGTGTCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCAAGGCTTCCCTCACACAGAACCTAACACGTAGTAGGTGTCAGG  695

seq1  AAGCATTTGGTGAATTTAATAGTAAGTAAAAGTGGCACAGATGGTCCAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGGTGAATTTAATAGTAAGTAAAAGTGGCACAGATGGTCCAGT  745

seq1  GTTAAGCACCAGAGGCAAAGGGGAAATAAAAGAAATAAGCTGGTAATTCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCACCAGAGGCAAAGGGGAAATAAAAGAAATAAGCTGGTAATTCC  795

seq1  AGCCAAGATAAATAAATGAAGGGTAGTCACTTGGGATGGAATAGAAGAAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGATAAATAAATGAAGGGTAGTCACTTGGGATGGAATAGAAGAAG  845

seq1  AGAGGAGACAGCCAGGATGAAAGGTTACAGAGAAAGTGGGTTCACAGAAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGACAGCCAGGATGAAAGGTTACAGAGAAAGTGGGTTCACAGAAG  895

seq1  GAAGTATCACGCCAGAGACTGAGCGAGGACCTGGTAGAAATCTGAGACCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCACGCCAGAGACTGAGCGAGGACCTGGTAGAAATCTGAGACCC  945

seq1  ACAGGAAGGCAAGTTTGCCAGGGAAGTCCACAGAGAAGTACAGTAGAAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGGCAAGTTTGCCAGGGAAGTCCACAGAGAAGTACAGTAGAAGG  995

seq1  GAGGAATTGCTAAAGAAACAAAATCAAAGACAGTGATGGGTACCCCACTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTGCTAAAGAAACAAAATCAAAGACAGTGATGGGTACCCCACTC  1045

seq1  TGTGTGACCCAAATCCAGATATTGATATGTTAACCCTGAATCTCAGAATT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACCCAAATCCAGATATTGATATGTTAACCCTGAATCTCAGAATT  1095

seq1  C  1096
      |
seq2  C  1096