BAC Information

Click to search

BAC

Clone NameB6Ng01-285B24
Chromosome18 (Build37)
Map Location 85,671,246 - 85,672,387
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp407, Cndp1, EG640234, Cndp2, LOC100039711, LOC100039725, B230399E16Rik, Cyb5, Fbxo15, 1700034H14Rik, LOC100039765
Downstream geneLOC665382, LOC545269, LOC545270, LOC665402, Neto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-285B24.bB6Ng01-285B24.g
ACCGA083652GA083653
length1,146848
definitionB6Ng01-285B24.b B6Ng01-285B24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattcttctctgaactctccatgcacaaatgactcttatggactc
ttggaaagaaggttccatcccattttgacatcaataatacatctttcctt
gccaacttaacaaagtctgacgttcaggaaggggctgaaatttagagtca
gatgtattaccaaaattggaaaaacaaaatcaaaatcaaaatgaacactt
tttttctcagagtcaatgctactagtttggtttagttggaaacacttttc
ttttcatgaagaaagcacgatggtgaaatttttgcaaattttccttaatt
tcttccctatcttgggcgtattggagcagaaggcttctgtcatttttaaa
taagaaatatctccaactcaaaaaatttaaacagcaaagaaaatgaagac
tttgacttttggaatccagcatatcttcaggttttttttctttctttttt
tttttttaataagctgaagcttcctggcaccctctgcagtctccacccac
tcccatgctactgcccacatctttctgcatttttgccttccagaacatac
ctaagaagccaaatctcataagagtagcaaatagaaggaatattatttct
ttcatctatgctgagtaaaaataaaagttttgtttttaaaattcataaat
gatttaaaataaaactatcatgaaaacagaaactctcggaatttgcaaat
acaaaaatgaggtaatttctttgcagtgttgcccaggtcaatccattggg
aggcaggggaaggggcagtagggattgagagagagggaaagagagaaaat
atagacaaagagaaatagagatccataaatattttatgggatattcacaa
tactcacaccccaactatgctcagagaatagttatttcatccatattgaa
ctcctgtcatgatgcaaacctagtgctaacttctacagtaaaatgatgga
gtaagctgttctgaattttttcagtaactactagaagaccaagaagaacc
tctgatgaggtcactgggaagtgacatggattgccttagaagtattatta
ctggtggtatttgccgagcagaggaagaattctggatgaaccacaatact
gtctctggagcatgcactgagatcctacatgggccaaagcatggat

gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tccaatgctttctccgcatctaaggtgaagatcatgtggtttttgtcttt
gagtttgtttatataatggatacgttgatggatttccgtacattaaacca
tccctgcatccctggaataaaatctacttagtcaggatggatggttgttt
aaatatgttcttgaattatgatggcgagaattttattgaatatttttgca
tcgatattcataagggaaattgatctgaagttctctatctttgttggatc
tttctgtggtttaggtatcagagtaattgtggcttcatagaatgagttgg
gtagataaccttctacttatagtttgtgcagaactggaattagatcttct
ttgaaggtctgatagaactctgcactaaacgcatctggtcctgggctttt
tttttggttgggggactattaatgactgcttctatttctttagaggatat
gggactgtttagattattaacttgatcctggtttaactttggtacctggt
atctgtctagaaatttgtccatttcatccaggttttccagttttgttgag
tatagccttttgtagaaggatctgatgtttttttggatttcttcaggatc
tgttgttatttctcccttttcatttctgatttttgttaattaggatgctg
tccctgtgccacctagtgagtctggctaagggtttatctatcttgttgat
tttctcaaagaaccagctccttgttgggttgatcttttgatagttcttct
tggttccacttggttgaatttgccccctgagtttttttatttccagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_85671246_85672387
seq2: B6Ng01-285B24.b_43_1188 (reverse)

seq1  ATCCATGCCTCTTGTCCATGTAAGATCTTCAGTGCAATGCTCAAGAGACA  50
      ||||||| || | | ||||||| |||| ||||||| |||||| |||||||
seq2  ATCCATG-CTTTGGCCCATGTAGGATC-TCAGTGC-ATGCTCCAGAGACA  47

seq1  GTA-TGTGGTCCTTCCAAGAATTCTTCCTCTGCTCGGCAAATACCA-CAG  98
      ||| |||||| | ||| ||||||||||||||||||||||||||||| |||
seq2  GTATTGTGGTTCATCC-AGAATTCTTCCTCTGCTCGGCAAATACCACCAG  96

seq1  TA--TATACTTCTTAGGCAAT-CATGTCACTTCCCAGTGACCTCATCAGA  145
      ||   |||||||| ||||||| ||||||||||||||||||||||||||||
seq2  TAATAATACTTCTAAGGCAATCCATGTCACTTCCCAGTGACCTCATCAGA  146

seq1  -GTTCTTCTTGGTCTTCTAGTAGTTACTG-AAAAATTCAGAACAGCTTAC  193
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTTCTTCTTGGTCTTCTAGTAGTTACTGAAAAAATTCAGAACAGCTTAC  196

seq1  T-CATCATTTTACTGTAGAAGTTAGCACTAGGTTTGCATCATGACAGGAG  242
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCATTTTACTGTAGAAGTTAGCACTAGGTTTGCATCATGACAGGAG  246

seq1  TTCAAATATGGATGAAATAACTATTCTCTGAGCATAGTTGGGGTGTGAGT  292
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-AATATGGATGAAATAACTATTCTCTGAGCATAGTTGGGGTGTGAGT  295

seq1  ATTGTGAATAT-CCATAAAATATTTATGGATCTCTATTTCTCTTTGTCTA  341
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATATCCCATAAAATATTTATGGATCTCTATTTCTCTTTGTCTA  345

seq1  TATTTTCTCTCTTTCCCTCTCTCTCAATCCCTACTGCCCCTTCCCCTGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCTCTCTTTCCCTCTCTCTCAATCCCTACTGCCCCTTCCCCTGCC  395

seq1  TCCCAATGGATTGACCTGGGCAACACTGCAAAGAAATTACCTCATTTTTG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATGGATTGACCTGGGCAACACTGCAAAGAAATTACCTCATTTTTG  445

seq1  TATTTGCAAATTCCGAGAGTTTCTGTTTTCATGATAGTTTTATTTTAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCAAATTCCGAGAGTTTCTGTTTTCATGATAGTTTTATTTTAAAT  495

seq1  CATTTATGAATTTTAAAAACAAAACTTTTATTTTTACTCAGCATAGATGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGAATTTTAAAAACAAAACTTTTATTTTTACTCAGCATAGATGA  545

seq1  AAGAAATAATATTCCTTCTATTTGCTACTCTTATGAGATTTGGCTTCTTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATAATATTCCTTCTATTTGCTACTCTTATGAGATTTGGCTTCTTA  595

seq1  GGTATGTTCTGGAAGGCAAAAATGCAGAAAGATGTGGGCAGTAGCATGGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTCTGGAAGGCAAAAATGCAGAAAGATGTGGGCAGTAGCATGGG  645

seq1  AGTGGGTGGAGACTGCAGAGGGTGCCAGGAAGCTTCAGCTTATTAAAAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGAGACTGCAGAGGGTGCCAGGAAGCTTCAGCTTATTAAAAAA  695

seq1  AAAAAAAGAAAGAAAAAAAACCTGAAGATATGCTGGATTCCAAAAGTCAA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGAAAGAAAAAAAACCTGAAGATATGCTGGATTCCAAAAGTCAA  745

seq1  AGTCTTCATTTTCTTTGCTGTTTAAATTTTTTGAGTTGGAGATATTTCTT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCATTTTCTTTGCTGTTTAAATTTTTTGAGTTGGAGATATTTCTT  795

seq1  ATTTAAAAATGACAGAAGCCTTCTGCTCCAATACGCCCAAGATAGGGAAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATGACAGAAGCCTTCTGCTCCAATACGCCCAAGATAGGGAAG  845

seq1  AAATTAAGGAAAATTTGCAAAAATTTCACCATCGTGCTTTCTTCATGAAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGGAAAATTTGCAAAAATTTCACCATCGTGCTTTCTTCATGAAA  895

seq1  AGAAAAGTGTTTCCAACTAAACCAAACTAGTAGCATTGACTCTGAGAAAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTGTTTCCAACTAAACCAAACTAGTAGCATTGACTCTGAGAAAA  945

seq1  AAAGTGTTCATTTTGATTTTGATTTTGTTTTTCCAATTTTGGTAATACAT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTTCATTTTGATTTTGATTTTGTTTTTCCAATTTTGGTAATACAT  995

seq1  CTGACTCTAAATTTCAGCCCCTTCCTGAACGTCAGACTTTGTTAAGTTGG  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCTAAATTTCAGCCCCTTCCTGAACGTCAGACTTTGTTAAGTTGG  1045

seq1  CAAGGAAAGATGTATTATTGATGTCAAAATGGGATGGAACCTTCTTTCCA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAAGATGTATTATTGATGTCAAAATGGGATGGAACCTTCTTTCCA  1095

seq1  AGAGTCCATAAGAGTCATTTGTGCATGGAGAGTTCAGAGAAGAATGAATT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCATAAGAGTCATTTGTGCATGGAGAGTTCAGAGAAGAATGAATT  1145

seq1  C  1142
      |
seq2  C  1146


| Home | SequenceCutter | Blast | Download |