BAC Information

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BAC

Clone NameB6Ng01-287G18
Chromosome18 (Build37)
Map Location 6,270,896 - 6,271,895
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp438, LOC100039442, Zeb1, EG664925, Arhgap12, Kif5b, LOC100039469
Downstream geneEG621100, LOC665028, EG622152, Epc1, LOC665047, 4921524L21Rik, LOC100039583, EG665053, Rab18, LOC620787, LOC100039635, Mkx, LOC664778, Armc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-287G18.bB6Ng01-287G18.g
ACCGA085353GA085354
length1,2291,062
definitionB6Ng01-287G18.b B6Ng01-287G18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatttttctaagacttttatcatgaatgggttttggattttg
tcaaatgctttctcagcatctaacgagatgatcatgtgatttttgtcttt
gagtttgtttatatagtggagtacattatggatttccatatattaaacca
tccctgcatccctggaatgaagcctacttaatgttcttggattctgttag
caagaattttattgagtatttttgcaccgatattcataagggaaattggt
ctgaagttctctttctttgttgggtctttatgtggtttaggtatcagagt
aattgacgcttcataaaatgaattgggtagagtaccttctgtttctattt
tgtggaatagtttaaggagaattggaattaggtcttctttgaaggtctga
tagaactctgcactaaacccatctggtcctgggctttttttttttttggt
tgggagactattaatgactgcttctatttctttaggggaaatgggactgt
ttagatcattaacatgatcctgctttaactttggtacctgatatctgtct
agaaaattgtccatttcatccagattttccagttttgttgagtattgcct
tttcaagtaggatctgatgatgttttggatttcctcatgttctgttatta
tgtctcccttttcatttctgatgttgttaattaggatactgtgcctgtgc
cctctagttagtctggctatgggtttatctatcctgttgattttctcaaa
gaaccaactcctcttttgggttgattctttgaatagttctttttgtttcc
ccttggttgatgtcagccctgagtttgattatttttctgctgtcctctcc
tcttgggtacatttgcttcattttgttgtagagcttttaggtgtgctgtc
aaactgctagtgtatgctctgtctagtttctttttggcagcacctcagag
ctattgagttttcctcttagactgcctttcattgtgtcccatagttgggg
tatgttgttgcttcattttccatttaaacctctaaaagtctttatctctt
cctttatttctttccttgaccaagtatcattgagtagaggtgtttgttca
gtttcacgtgaatggttgtgccctaatattatttaatgttgtaattggag
atcggccatgggatctggaagaagtccaggtaatttcaggacctttggat
ccgtgtcgagggatcggtttggtgcgaac
gaattcaaagcccagggttggctcaaggactacctagggcattggtgaag
gccaggaagcaaagtttgattatgcttaggtatttggcaagtcattgctt
ggaggcacctataataaaacaatactgaaaggaagcacacagatccattt
gcaggggcaaaattgaagcatatgtgctatgggatgccacagttccagga
aactgagtttctgtgaaactcttcgcctcaggtctgcttccaggtttcta
aacctgtcaagcaagtcactactggagtgcatgtagcagtgggcttaaga
ctctcaccctagttgcctggaagtcagcctttggatgaagacatagaact
ctcagctctgcctgtgccatgcctgcctggatgctgccatgctcccacct
tgatgataatggactgaacttctggacctgtaaggcagccccaattaaat
gttgggtttttttttttttttttttttttctataagacttgccttggtca
tggtgtctgttcacagcagtaaaaccctaactaagacagctttgcgtcac
aaagtcatatatatatagggcacatcaggttttcccacagtacctataag
ctgggctttcctaaacatgtgctcaccactaggaaagggctgagagagaa
ggtcagttttgtggaatcaaataaccagcctgtgtcaactgaggattcag
gacagaaacacctatctaaactgtggcgctgaagtgacagtcacaggaca
aagatctgttcaagagtaaatttccattttctcactacaaacagggttat
ctgataccttggatgcaaggaaacaaagcaaacaagactctgtataattt
tctagatatagaaaggctatgcccatttttcccacattcaggaggagggc
tgatggggaatttctcgctttacttaattctgtacttttcatttctttcg
aggtaagccatatgtttgattgtgttattaaaattctaataaaataactt
ataaaataacaacataaaaggtcacaagtttggggttgcctttggtcagg
cccagggaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_6270896_6271895
seq2: B6Ng01-287G18.g_110_1131

seq1  ATTGGTGAAGGCCAGGAAGCAAAGTTTGATTATGCTTAGGTATTTGGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTGAAGGCCAGGAAGCAAAGTTTGATTATGCTTAGGTATTTGGCAA  50

seq1  GTCATTGCTTGGAGGCACCTATAATAAAACAATACTGAAAGGAAGCACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTGCTTGGAGGCACCTATAATAAAACAATACTGAAAGGAAGCACAC  100

seq1  AGATCCATTTGCAGGGGCAAAATTGAAGCATATGTGCTATGGGATGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCATTTGCAGGGGCAAAATTGAAGCATATGTGCTATGGGATGCCAC  150

seq1  AGTTCCAGGAAACTGAGTTTCTGTGAAACTCTTCGCCTCAGGTCTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGAAACTGAGTTTCTGTGAAACTCTTCGCCTCAGGTCTGCTTC  200

seq1  CAGGTTTCTAAACCTGTCAAGCAAGTCACTACTGGAGTGCATGTAGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTCTAAACCTGTCAAGCAAGTCACTACTGGAGTGCATGTAGCAGT  250

seq1  GGGCTTAAGACTCTCACCCTAGTTGCCTGGAAGTCAGCCTTTGGATGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAAGACTCTCACCCTAGTTGCCTGGAAGTCAGCCTTTGGATGAAG  300

seq1  ACATAGAACTCTCAGCTCTGCCTGTGCCATGCCTGCCTGGATGCTGCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAACTCTCAGCTCTGCCTGTGCCATGCCTGCCTGGATGCTGCCAT  350

seq1  GCTCCCACCTTGATGATAATGGACTGAACTTCTGGACCTGTAAGGCAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCACCTTGATGATAATGGACTGAACTTCTGGACCTGTAAGGCAGCC  400

seq1  CCAATTAAATGTTGGGTTTTTTTTTTTTTTTTTTTTTTTCTATAAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTAAATGTTGGGTTTTTTTTTTTTTTTTTTTTTTTCTATAAGACTT  450

seq1  GCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGTCATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACAGC  500

seq1  TTTGCGTCACAAAGTCATATATATATAGGGCACATCAGGTTTTCCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGTCACAAAGTCATATATATATAGGGCACATCAGGTTTTCCCACAG  550

seq1  TACCTATAAGCTGGGCTTTCCTAAACATGTGCTCACCACTAGGAAAGGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATAAGCTGGGCTTTCCTAAACATGTGCTCACCACTAGGAAAGGGC  600

seq1  TGAGAGAGAAGGTCAGTTTTGTGGAATCAAATAACCAGCCTGTGTCAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGAGAAGGTCAGTTTTGTGGAATCAAATAACCAGCCTGTGTCAACT  650

seq1  GAGGATTCAGGACAGAAACACCTATCTAAACTGTGGCGCTGAAGTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATTCAGGACAGAAACACCTATCTAAACTGTGGCGCTGAAGTGACAG  700

seq1  TCACAGGACAAAGATCTGTTCAAGAGTAAATTTCCA-TTTCTCACTACAA  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCACAGGACAAAGATCTGTTCAAGAGTAAATTTCCATTTTCTCACTACAA  750

seq1  ACA-GGTTATCTGATACCTT-GATGCAA-GAAACAAAGCAAACAAGACTC  796
      ||| |||||||||||||||| ||||||| |||||||||||||||||||||
seq2  ACAGGGTTATCTGATACCTTGGATGCAAGGAAACAAAGCAAACAAGACTC  800

seq1  TGTATA--TTTCTAGATA-AGAAA-GCTATGCCCCATTTTCCCACATTCA  842
      ||||||  |||||||||| ||||| |||||||||  ||||||||||||||
seq2  TGTATAATTTTCTAGATATAGAAAGGCTATGCCCATTTTTCCCACATTCA  850

seq1  -GAGTA-GGCTGATGGGGAATT--TCACTTTACTTA--TCTGTACTTTTC  886
       ||| | |||||||||||||||  || |||||||||  ||||||||||||
seq2  GGAGGAGGGCTGATGGGGAATTTCTCGCTTTACTTAATTCTGTACTTTTC  900

seq1  ATTTCTTTCGA-GTAAG-CATATG-TTGAT--TGTTATTAAAATTCATAT  931
      ||||||||||| ||||| |||||| |||||  ||||||||||||||  ||
seq2  ATTTCTTTCGAGGTAAGCCATATGTTTGATTGTGTTATTAAAATTCTAAT  950

seq1  AAAATAACTTATAAAATAACAAACATAAAA-GTCACAAGTTT-GGGTTGC  979
      |||||||||||||||||||| ||||||||| ||||||||||| |||||||
seq2  AAAATAACTTATAAAATAAC-AACATAAAAGGTCACAAGTTTGGGGTTGC  999

seq1  CTT--GTCAGGCCCAGTGAAATA  1000
      |||  ||||||||||| ||||||
seq2  CTTTGGTCAGGCCCAGGGAAATA  1022