BAC Information

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BAC

Clone NameB6Ng01-289A21
Chromosome18 (Build37)
Map Location 70,533,108 - 70,534,504
singlet/doubletsinglet
Overlap genenone
Upstream geneTcf4, Ccdc68, Rab27b, 2310002L13Rik
Downstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032, Dcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289A21.bB6Ng01-289A21.g
ACCGA086558GA086559
length1,2211,085
definitionB6Ng01-289A21.b B6Ng01-289A21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaaatttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtctctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcctttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctctctcccgtttcttc
ttggaggcactcagagctatgagtttcccttcttagaaaatgctttcatg
tgtccaaaaggtttgggtacgttgtggccttcatttccattaaactctaa
aagtctttaatttctttccttattctccttgaccaaggtattcattggag
aaggagggtgttgttcagttccacgtggagtggttggctcggttattttt
gtatgaaggaatcagctatgcatggtatcgataggatgcacatgggcaca
agtttccaatattttggagat

gaattcatggcaaggagtcctgcaactcatgcttaaatgaaacttttcta
atccatgaatttttttaatatgacacatcacagtcttttcaatacctcag
ccctccacatttatatatttttattaaattatcttatttatttacattcc
aaatgctgcccctcttcccagtcctccctcccagagttctcctccccatc
actcctcccctttgtctctgagagagggtccccccacccccctcggcccc
tcagcaatacatgggtgtaatgttaaacagtagcttttaaaaggaactat
gtagagcatccaaaggaggcttgttcacaactcattgtttgccatcacct
ccattttgtgcacctctatcgatgctcactaaagcaccgcaggcattgat
gaaaatctctgaagagttacaaatgaattctagccagcaagctaagccac
aaacacaggagccatgaaagatgagtgttgactgtaactcacattgctta
tggaggtaaacattgtaaaatgtcagatgaggaaaaacacagagtcacgt
ggtgagaaaaagccctatgtccactcatctacctgcacatttaagttctc
ttagcagccaaataatgtcccactgtgtaaatgtcccacatttcctttat
ctgttcatcagtaggtgggtatctaggttgtttccaattcctggctatta
tgaatagagcagcaatgaacatggatgagcaagggtctctgtgctaggat
acagaatccttttgggtataagcctaagtgtgcttgctataacatgatct
aagcttcctaacaaatctcctatttattcccataacggctcacaggtccc
acccctagccaagaagctatttgaaactgatactcactggcaaagagaaa
atcagtttctagaaaggaagtgaccctgggtatatcaaccacacttcagt
caggacaccatgtccaggagtatttagtaaacaacaaaacagaaaccaat
tccattttctttgtgtgctcttgcttgtttgttgcttttttttctagggt
ttttgtaggtttttattttggatttggtgaagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_70533108_70534504
seq2: B6Ng01-289A21.g_69_1153

seq1  GAATTCATGGCAAGGAGTCCTGCAACTCATGCTTAAATGAAACTTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGCAAGGAGTCCTGCAACTCATGCTTAAATGAAACTTTTCTA  50

seq1  ATCCATGAATTTTTTTAATATGACACATCACAGTCTTTTCAATACCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGAATTTTTTTAATATGACACATCACAGTCTTTTCAATACCTCAG  100

seq1  CCCTCCACATTTATATATTTTTATTAAATTATCTTATTTATTTACATTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACATTTATATATTTTTATTAAATTATCTTATTTATTTACATTCC  150

seq1  AAATGCTGCCCCTCTTCCCAGTCCTCCCTCCCAGAGTTCTCCTCCCCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGCCCCTCTTCCCAGTCCTCCCTCCCAGAGTTCTCCTCCCCATC  200

seq1  ACTCCTCCCCTTTGTCTCTGAGAGAGGGTCCCCCCACCCCCCTCGGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCCCTTTGTCTCTGAGAGAGGGTCCCCCCACCCCCCTCGGCCCC  250

seq1  TCAGCAATACATGGGTGTAATGTTAAACAGTAGCTTTTAAAAGGAACTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATACATGGGTGTAATGTTAAACAGTAGCTTTTAAAAGGAACTAT  300

seq1  GTAGAGCATCCAAAGGAGGCTTGTTCACAACTCATTGTTTGCCATCACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCATCCAAAGGAGGCTTGTTCACAACTCATTGTTTGCCATCACCT  350

seq1  CCATTTTGTGCACCTCTATCGATGCTCACTAAAGCACCGCAGGCATTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTGTGCACCTCTATCGATGCTCACTAAAGCACCGCAGGCATTGAT  400

seq1  GAAAATCTCTGAAGAGTTACAAATGAATTCTAGCCAGCAAGCTAAGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCTCTGAAGAGTTACAAATGAATTCTAGCCAGCAAGCTAAGCCAC  450

seq1  AAACACAGGAGCCATGAAAGATGAGTGTTGACTGTAACTCACATTGCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGGAGCCATGAAAGATGAGTGTTGACTGTAACTCACATTGCTTA  500

seq1  TGGAGGTAAACATTGTAAAATGTCAGATGAGGAAAAACACAGAGTCACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTAAACATTGTAAAATGTCAGATGAGGAAAAACACAGAGTCACGT  550

seq1  GGTGAGAAAAAGCCCTATGTCCACTCATCTACCTGCACATTTAAGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAAAAAGCCCTATGTCCACTCATCTACCTGCACATTTAAGTTCTC  600

seq1  TTAGCAGCCAAATAATGTCCCACTGTGTAAATGTCCCACATTTCCTTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGCCAAATAATGTCCCACTGTGTAAATGTCCCACATTTCCTTTAT  650

seq1  CTGTTCATCAGTAGGTGGGTATCTAGGTTGTTTCCAATTCCTGGCTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATCAGTAGGTGGGTATCTAGGTTGTTTCCAATTCCTGGCTATTA  700

seq1  TGAATAGAGCAGCAATGAACATGGATGAGCAAGGGTCTCTGTGCTAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGAGCAGCAATGAACATGGATGAGCAAGGGTCTCTGTGCTAGGAT  750

seq1  ACAGAATCCTTTTGGGTATAAGCCTAAGTGTGCTTGCTATAACATGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATCCTTTTGGGTATAAGCCTAAGTGTGCTTGCTATAACATGATCT  800

seq1  AAGCTTCCTAACAAATCTCCTATTTATTCCCATAACGGCTCACAGGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCTAACAAATCTCCTATTTATTCCCATAACGGCTCACAGGTCCC  850

seq1  ACCCCTAGCCAAGAAGCTATTTGAAACTGATACTCACTGGCAAAGAGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCCCTAGCCAAGAAGCTATTTGAAACTGATACTCACTGGCAAAGAG-AA  899

seq1  AATCAGGTTTCTAG-AAGGAAGTGACCCTGGGTATATCAACCACACTTCA  949
      ||||| |||||||| |||||||||||||||||||||||||||||||||||
seq2  AATCA-GTTTCTAGAAAGGAAGTGACCCTGGGTATATCAACCACACTTCA  948

seq1  GTCA-GACACCATGTCCAGGAGTATTTAGTAAAC-ACAAAACAGAAACCA  997
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTCAGGACACCATGTCCAGGAGTATTTAGTAAACAACAAAACAGAAACCA  998

seq1  ATTCCATTTTTCTTTTGTGTGCTTCTTTGCTTTGTTTTGTTTTGTCTTTT  1047
      ||||||||||   ||||||||||   ||||      ||||||  |  |||
seq2  ATTCCATTTT--CTTTGTGTGCT--CTTGC------TTGTTTGTTGCTTT  1038

seq1  TTTTTCTTATGGTTTTTGTAGGTTTTTATTTTGGATTTGGTG-AGTTGTC  1096
      |||||| || |||||||||||||||||||||||||||||||| ||| |  
seq2  TTTTTC-TAGGGTTTTTGTAGGTTTTTATTTTGGATTTGGTGAAGTGG--  1085

seq1  TGTTTTGGGGTTTTGTTTGTTTTGAAGTAGAAAAAACATAATGGTGGGTG  1146
                                                        
seq2  --------------------------------------------------  1085

seq1  GATAGTGAGGGAGGTCGGAAGAAGAAACATGATCAAAATATATGGAAAAT  1196
                                                        
seq2  --------------------------------------------------  1085

seq1  AAATAAAAAAGTTTTTAAAAGCACCATGTATCAGAATATGTTATATGAAA  1246
                                                        
seq2  --------------------------------------------------  1085

seq1  AAAAATCATTTTCAATTTTTTAAAAAGCCCCTTTCTCTTATCGAAACAAG  1296
                                                        
seq2  --------------------------------------------------  1085

seq1  CAAGTATTTTTCAATTGCAGTGAAAAAATTCCCTCAGTCACAAGCTGCTC  1346
                                                        
seq2  --------------------------------------------------  1085

seq1  AGAAAGCAAGTCTTGCCTGTTTTACTGTGTTTGTTTGTCTGGGTGAAGTG  1396
                                                        
seq2  --------------------------------------------------  1085

seq1  G  1397
       
seq2  -  1085


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