BAC Information

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BAC

Clone NameB6Ng01-289B05
Chromosome18 (Build37)
Map Location 77,776,925 - 77,950,815
singlet/doubletdoublet
Overlap geneRnf165, 8030462N17Rik
Upstream geneEG639576, EG664805, LOC620139, Ier3ip1, Hdhd2, Katnal2, Pias2, EG639653, St8sia5, Loxhd1
Downstream gene4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3, Slc14a1, Slc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289B05.bB6Ng01-289B05.g
ACCGA086572GA086573
length553655
definitionB6Ng01-289B05.b B6Ng01-289B05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,950,257 - 77,950,815)(77,776,925 - 77,777,577)
sequence
ttaaaatggtaaactactactactccgtctctgtccctctttcccccaac
aattgtgtgtgtgtgtgtgagagggggggtggcggtggtggtgtgtagca
cagactggttttgaactcctgattctcctgcttccatcttccaaatgcta
gctaggattacaagggttaaattaacatgggtgtaaacatcaaaataaat
gtgtagaatttgaaagacaaggagaaaaggcaagatagctgtgactagag
gtccaagttagtcagagttttttctttttttaagctagtctcaccttata
gctcaggacagtctcaatcctcctgcctcaccttgcgtgctcagattttt
cagtttgagttaaatgtttctgtttgggtgcacgtactgtttcattaatt
ggaggtcggaggagtttgtgggagttggctctctattttcatcatgtagc
tctcaagcattggggtaggtgtctaacttaccgagccatattgtaggctc
cataagtcagatttcttagggaaatgccacttcaactttatggattttga
aac
gaattctattagacttggcactgaggggatttctctcatcaaatgtgcat
gctctggagagtcaaaaaagcaagcaaggtctagagcagtggttcaccac
catcagtgtgcattagaatatccacataggttctcagagattctaattca
gaggctatgaggacaggcccagaaatccacctgtttaacaagctccacaa
gcaggagtgttgcttaggaagtgacatctagggacatcgtggtctcagag
aatggttctctgtagcctcccccagcctgaagcgggctggtacagaccat
gttgtcactgaggtggggccacctgtggtgcagctttccgacttggctgg
cttcttttgaagtgacaactgccctgagattctgctacctgccaagaggc
tgaacctgtcttcctgagacattcctgaataagcaaccagcctggcgact
gagtgctgacagaatggctccaggcaccaagagtggactggtggggggag
aaggggaatgggccttcccccttataagcacggtctcttaataaactcgt
gggccttgaacagaaaaacatgtcttggtctccattaatttctctcacag
tctgagtctcttttcagccccagcctgcctcccaggtgtcccggttcatg
aaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_77950257_77950815
seq2: B6Ng01-289B05.b_44_602 (reverse)

seq1  GTTTCAAAATCCATAAAGTTGAAGTGGCATTTCCCTAAGAAATCTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAAAATCCATAAAGTTGAAGTGGCATTTCCCTAAGAAATCTGACTT  50

seq1  ATGGAGCCTACAATATGGCTCGGTAAGTTAGACACCTGCCCCAGTGCTTG  100
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  ATGGAGCCTACAATATGGCTCGGTAAGTTAGACACCTACCCCAATGCTTG  100

seq1  AGAGCTACATGATGTAAATAGAGAGCCAACTCCCACAAACTCCTCCGACC  150
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGAGCTACATGATGAAAATAGAGAGCCAACTCCCACAAACTCCTCCGACC  150

seq1  TCCACTTAATGAAACAGTACGTGCACCCAAACAGAAACATTTAACTCAAA  200
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTAATGAAACAGTACGTGCACCCAAACAGAAACATTTAACTCAAA  200

seq1  CTGAAAAATCTGAGCACGCAAGGTGAGGCAGGAGGATTGAGACTGTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAATCTGAGCACGCAAGGTGAGGCAGGAGGATTGAGACTGTCCTG  250

seq1  AGCTATAAGGTGAGACTAGCTTAAAAAAAGAAAAAACTCTGACTAACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAGGTGAGACTAGCTTAAAAAAAGAAAAAACTCTGACTAACTTG  300

seq1  GACCTCTAGTCACAGCTATCTTGCCTTTTCTCCTTGTCTTTCAAATTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTAGTCACAGCTATCTTGCCTTTTCTCCTTGTCTTTCAAATTCTA  350

seq1  CACATTTATTTTGATGTTTACACCCATGTTAATTTAACCCTTGTAATCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTATTTTGATGTTTACACCCATGTTAATTTAACCCTTGTAATCCT  400

seq1  AGCTAGCATTTGGAAGATGGAAGCAGGAGAATCAGGAGTTCAAAACCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCATTTGGAAGATGGAAGCAGGAGAATCAGGAGTTCAAAACCAGT  450

seq1  CTGTGCTACACACCACCACCGCCACCCCCCCTCTCACACACACACACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTACACACCACCACCGCCACCCCCCCTCTCACACACACACACACA  500

seq1  ATTGTTGGGGGAAAGAGGGACAGAGACGGAGTAGTAGTAGTTTACCATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGGGGGAAAGAGGGACAGAGACGGAGTAGTAGTAGTTTACCATTT  550

seq1  TAAGAATTC  559
      |||||||||
seq2  TAAGAATTC  559

seq1: chr18_77776925_77777577
seq2: B6Ng01-289B05.g_70_724

seq1  GAATTCTATTAGACTTGGCACTGAGGGGATTTCTCTCATCAAATGTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAGACTTGGCACTGAGGGGATTTCTCTCATCAAATGTGCAT  50

seq1  GCTCTGGAGAGTCAAAAAAGCAAGCAAGGTCTAGAGCAGTGGTTCACCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGAGAGTCAAAAAAGCAAGCAAGGTCTAGAGCAGTGGTTCACCAC  100

seq1  CATCAGTGTGCATTAGAATATCCACATAGGTTCTCAGAGATTCTAATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTGTGCATTAGAATATCCACATAGGTTCTCAGAGATTCTAATTCA  150

seq1  GAGGCTATGAGGACAGGCCCAGAAATCCACCTGTTTAACAAGCTCCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTATGAGGACAGGCCCAGAAATCCACCTGTTTAACAAGCTCCACAA  200

seq1  GCAGGAGTGTTGCTTAGGAAGTGACATCTAGGGACATCGTGGTCTCAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTGTTGCTTAGGAAGTGACATCTAGGGACATCGTGGTCTCAGAG  250

seq1  AATGGTTCTCTGTAGCCTCCCCCAGCCTGAAGCGGGCTGGTACAGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTCTCTGTAGCCTCCCCCAGCCTGAAGCGGGCTGGTACAGACCAT  300

seq1  GTTGTCACTGAGGTGGGGCCACCTGTGGTGCAGCTTTCCGACTTGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCACTGAGGTGGGGCCACCTGTGGTGCAGCTTTCCGACTTGGCTGG  350

seq1  CTTCTTTTGAAGTGACAACTGCCCTGAGATTCTGCTACCTGCCAAGAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTGAAGTGACAACTGCCCTGAGATTCTGCTACCTGCCAAGAGGC  400

seq1  TGAACCTGTCTTCCTGAGACATTCCTGAATAAGCAACCAGCCTGGCGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGTCTTCCTGAGACATTCCTGAATAAGCAACCAGCCTGGCGACT  450

seq1  GAGTGCTGACAGAATGGCTCCAGGCACCAAGAGTGGACTGGTGGGGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGACAGAATGGCTCCAGGCACCAAGAGTGGACTGGTGGGGGGAG  500

seq1  AAGGGGAATGGGCCTTCCCCCTTATAAGCACGGTCTCTTAATAAACTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAATGGGCCTTCCCCCTTATAAGCACGGTCTCTTAATAAACTCGT  550

seq1  GGGCCTTGAACAG-AAAACATGTCTTGGTCTCCATTAATTTCTCTCACAG  599
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGGCCTTGAACAGAAAAACATGTCTTGGTCTCCATTAATTTCTCTCACAG  600

seq1  TCTGAGTCTC-TTTCAGCCCCAGCCTGCCTCCCAGGTGTACCGGTTCATG  648
      |||||||||| |||||||||||||||||||||||||||| ||||||||||
seq2  TCTGAGTCTCTTTTCAGCCCCAGCCTGCCTCCCAGGTGTCCCGGTTCATG  650

seq1  TAGGC  653
       ||||
seq2  AAGGC  655